RNA–Protein interactions for RNA: ENST00000531873.5

CD44-234, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 584 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-234ENST00000531873 FAM57AQ8TBR7 257 aa1.72□□□□□ -2.13
CD44-234ENST00000531873 ORAOV1Q8WV07 137 aa1.72□□□□□ -2.13
CD44-234ENST00000531873 BLNKQ8WV28 456 aa1.72□□□□□ -2.13
CD44-234ENST00000531873 FMC1Q96HJ9 113 aa1.72□□□□□ -2.13
CD44-234ENST00000531873 TRNT1Q96Q11 434 aaKnown RBP1.72□□□□□ -2.13
CD44-234ENST00000531873 SPIN2AQ99865 258 aa1.72□□□□□ -2.13
CD44-234ENST00000531873 SPIN2BQ9BPZ2 258 aa1.72□□□□□ -2.13
CD44-234ENST00000531873 MED10Q9BTT4 135 aa1.72□□□□□ -2.13
CD44-234ENST00000531873 MS4A8Q9BY19 250 aa1.72□□□□□ -2.13
CD44-234ENST00000531873 MRPL20Q9BYC9 149 aaKnown RBP1.72□□□□□ -2.13
CD44-234ENST00000531873 POMKQ9H5K3 350 aa1.72□□□□□ -2.13
CD44-234ENST00000531873 EURLQ9NYK6 297 aa1.72□□□□□ -2.13
CD44-234ENST00000531873 ZNF835Q9Y2P0 537 aa1.72□□□□□ -2.13
CD44-234ENST00000531873 USH1CQ9Y6N9 552 aa1.72□□□□□ -2.13
CD44-234ENST00000531873 URGCP-MRPS24S4R325 110 aa1.72□□□□□ -2.13
CD44-234ENST00000531873 SEC16AO15027 2179 aa1.71□□□□□ -2.14
CD44-234ENST00000531873 PLA2R1Q13018 1463 aa1.71□□□□□ -2.14
CD44-234ENST00000531873 SNAPC4Q5SXM2 1469 aa1.71□□□□□ -2.14
CD44-234ENST00000531873 ABCC10Q5T3U5 1492 aa1.71□□□□□ -2.14
CD44-234ENST00000531873 PKD1L2Q7Z442 2459 aa1.71□□□□□ -2.14
CD44-234ENST00000531873 IGLV4-60A0A075B6I1 120 aa1.71□□□□□ -2.14
CD44-234ENST00000531873 LOC389332A0A1B0GUA5 103 aa1.71□□□□□ -2.14
CD44-234ENST00000531873 A0A1W2PNU3 283 aaPredicted RBP1.71□□□□□ -2.14
CD44-234ENST00000531873 A8MUU9 505 aa1.71□□□□□ -2.14
CD44-234ENST00000531873 A8MWL6 223 aa1.71□□□□□ -2.14
CD44-234ENST00000531873 SMLR1H3BR10 107 aa1.71□□□□□ -2.14
CD44-234ENST00000531873 CLDN34H7C241 214 aa1.71□□□□□ -2.14
CD44-234ENST00000531873 K7EM74 188 aa1.71□□□□□ -2.14
CD44-234ENST00000531873 GYG2O15488 501 aa1.71□□□□□ -2.14
CD44-234ENST00000531873 CALUO43852 315 aaPredicted RBP1.71□□□□□ -2.14
CD44-234ENST00000531873 OR7C2O60412 319 aa1.71□□□□□ -2.14
CD44-234ENST00000531873 OR2A4O95047 310 aa1.71□□□□□ -2.14
CD44-234ENST00000531873 TNFAIP8O95379 198 aa1.71□□□□□ -2.14
CD44-234ENST00000531873 PRB2P02812 416 aaPredicted RBP1.71□□□□□ -2.14
CD44-234ENST00000531873 SEC11BP0C7V7 166 aa1.71□□□□□ -2.14
CD44-234ENST00000531873 TSPOP30536 169 aa1.71□□□□□ -2.14
CD44-234ENST00000531873 KDELR2P33947 212 aa1.71□□□□□ -2.14
CD44-234ENST00000531873 LGALS7P47929 136 aa1.71□□□□□ -2.14
CD44-234ENST00000531873 MEF2CQ06413 473 aaPredicted RBP1.71□□□□□ -2.14
CD44-234ENST00000531873 RAB31Q13636 194 aa1.71□□□□□ -2.14
CD44-234ENST00000531873 PIGHQ14442 188 aaPredicted RBP1.71□□□□□ -2.14
CD44-234ENST00000531873 MAPRE2Q15555 327 aa1.71□□□□□ -2.14
CD44-234ENST00000531873 TRIP13Q15645 432 aaPredicted RBP1.71□□□□□ -2.14
CD44-234ENST00000531873 CLEC12AQ5QGZ9 265 aa1.71□□□□□ -2.14
CD44-234ENST00000531873 ERICH5Q6P6B1 374 aa1.71□□□□□ -2.14
CD44-234ENST00000531873 UGT2A3Q6UWM9 527 aa1.71□□□□□ -2.14
CD44-234ENST00000531873 FAM231DQ6ZW35 169 aa1.71□□□□□ -2.14
CD44-234ENST00000531873 MRPL52Q86TS9 123 aaKnown RBP1.71□□□□□ -2.14
CD44-234ENST00000531873 IQCF2Q8IXL9 164 aa1.71□□□□□ -2.14
CD44-234ENST00000531873 BOD1L2Q8IYS8 172 aa1.71□□□□□ -2.14
CD44-234ENST00000531873 TMEM105Q8N8V8 129 aa1.71□□□□□ -2.14
CD44-234ENST00000531873 ST20-AS1Q8NBB2 130 aa1.71□□□□□ -2.14
CD44-234ENST00000531873 ZNF738Q8NE65 137 aa1.71□□□□□ -2.14
CD44-234ENST00000531873 OR7G1Q8NGA0 311 aa1.71□□□□□ -2.14
CD44-234ENST00000531873 PHF10Q8WUB8 498 aaKnown RBP1.71□□□□□ -2.14
CD44-234ENST00000531873 C22orf15Q8WYQ4 148 aa1.71□□□□□ -2.14
CD44-234ENST00000531873 WDR34Q96EX3 536 aa1.71□□□□□ -2.14
CD44-234ENST00000531873 GPR82Q96P67 336 aa1.71□□□□□ -2.14
CD44-234ENST00000531873 IP6K3Q96PC2 410 aa1.71□□□□□ -2.14
CD44-234ENST00000531873 OR2M4Q96R27 311 aa1.71□□□□□ -2.14
CD44-234ENST00000531873 OR2A7Q96R45 310 aa1.71□□□□□ -2.14
CD44-234ENST00000531873 LLPHQ9BRT6 129 aaKnown RBP1.71□□□□□ -2.14
CD44-234ENST00000531873 ANGPTL4Q9BY76 406 aa1.71□□□□□ -2.14
CD44-234ENST00000531873 LHX5Q9H2C1 402 aa1.71□□□□□ -2.14
CD44-234ENST00000531873 MFSD1Q9H3U5 465 aa1.71□□□□□ -2.14
CD44-234ENST00000531873 CHMP4BQ9H444 224 aaKnown RBP1.71□□□□□ -2.14
CD44-234ENST00000531873 METTL8Q9H825 291 aaKnown RBP1.71□□□□□ -2.14
CD44-234ENST00000531873 RBM22Q9NW64 420 aaKnown RBP eCLIP1.71□□□□□ -2.14
CD44-234ENST00000531873 RAB22AQ9UL26 194 aa1.71□□□□□ -2.14
CD44-234ENST00000531873 INSIG2Q9Y5U4 225 aa1.71□□□□□ -2.14
CD44-234ENST00000531873 ABCB11O95342 1321 aa1.7□□□□□ -2.14
CD44-234ENST00000531873 USP42Q9H9J4 1324 aaKnown RBP1.7□□□□□ -2.14
CD44-234ENST00000531873 IGKV2-28A0A075B6P5 120 aa1.7□□□□□ -2.14
CD44-234ENST00000531873 SULT1C2O00338 296 aa1.7□□□□□ -2.14
CD44-234ENST00000531873 CETN3O15182 167 aa1.7□□□□□ -2.14
CD44-234ENST00000531873 SCO1O75880 301 aa1.7□□□□□ -2.14
CD44-234ENST00000531873 MYO1DO94832 1006 aa1.7□□□□□ -2.14
CD44-234ENST00000531873 CDK14O94921 469 aa1.7□□□□□ -2.14
CD44-234ENST00000531873 IGKV2D-28P01615 120 aa1.7□□□□□ -2.14
CD44-234ENST00000531873 CDK1P06493 297 aa1.7□□□□□ -2.14
CD44-234ENST00000531873 ZNF286BP0CG31 522 aa1.7□□□□□ -2.14
CD44-234ENST00000531873 RD3LP0DJH9 198 aa1.7□□□□□ -2.14
CD44-234ENST00000531873 PSMB6P28072 239 aa1.7□□□□□ -2.14
CD44-234ENST00000531873 XKP51811 444 aa1.7□□□□□ -2.14
CD44-234ENST00000531873 SYCP1Q15431 976 aa1.7□□□□□ -2.14
CD44-234ENST00000531873 FAM104BQ5XKR9 115 aa1.7□□□□□ -2.14
CD44-234ENST00000531873 CYP4Z1Q86W10 505 aa1.7□□□□□ -2.14
CD44-234ENST00000531873 LRRC6Q86X45 466 aa1.7□□□□□ -2.14
CD44-234ENST00000531873 ITPRIPQ8IWB1 547 aa1.7□□□□□ -2.14
CD44-234ENST00000531873 MIR7-3HGQ8N6C7 128 aa1.7□□□□□ -2.14
CD44-234ENST00000531873 ACTL9Q8TC94 416 aa1.7□□□□□ -2.14
CD44-234ENST00000531873 RNASEH2CQ8TDP1 164 aaKnown RBP1.7□□□□□ -2.14
CD44-234ENST00000531873 RTN4IP1Q8WWV3 396 aaPredicted RBP1.7□□□□□ -2.14
CD44-234ENST00000531873 IFT81Q8WYA0 676 aa1.7□□□□□ -2.14
CD44-234ENST00000531873 FAM210AQ96ND0 272 aa1.7□□□□□ -2.14
CD44-234ENST00000531873 RNF157Q96PX1 679 aa1.7□□□□□ -2.14
CD44-234ENST00000531873 DERL3Q96Q80 235 aa1.7□□□□□ -2.14
CD44-234ENST00000531873 METTL17Q9H7H0 456 aaPredicted RBP1.7□□□□□ -2.14
CD44-234ENST00000531873 RDH14Q9HBH5 336 aa1.7□□□□□ -2.14
CD44-234ENST00000531873 ABCB9Q9NP78 766 aa1.7□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms