RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 PLXNB2O15031 1838 aa1.77□□□□□ -2.13
CD44-233ENST00000531141 PSME4Q14997 1843 aa1.77□□□□□ -2.13
CD44-233ENST00000531141 PHIPQ8WWQ0 1821 aa1.77□□□□□ -2.13
CD44-233ENST00000531141 ANKRD36CQ5JPF3 1778 aa1.77□□□□□ -2.13
CD44-233ENST00000531141 NID2Q14112 1375 aa1.77□□□□□ -2.13
CD44-233ENST00000531141 GOLGA6L4A6NEF3 574 aa1.77□□□□□ -2.13
CD44-233ENST00000531141 LRRIQ4A6NIV6 560 aa1.77□□□□□ -2.13
CD44-233ENST00000531141 H0YC42 278 aa1.77□□□□□ -2.13
CD44-233ENST00000531141 M0R1X1 148 aa1.77□□□□□ -2.13
CD44-233ENST00000531141 WRBO00258 174 aa1.77□□□□□ -2.13
CD44-233ENST00000531141 SCO1O75880 301 aa1.77□□□□□ -2.13
CD44-233ENST00000531141 CYBAP13498 195 aa1.77□□□□□ -2.13
CD44-233ENST00000531141 NELFEP18615 380 aaKnown RBP1.77□□□□□ -2.13
CD44-233ENST00000531141 GALR1P47211 349 aa1.77□□□□□ -2.13
CD44-233ENST00000531141 CMC4P56277 68 aaPredicted RBP1.77□□□□□ -2.13
CD44-233ENST00000531141 RPS15AP62244 130 aaKnown RBP1.77□□□□□ -2.13
CD44-233ENST00000531141 FKBP1AP62942 108 aaKnown RBP1.77□□□□□ -2.13
CD44-233ENST00000531141 HADHQ16836 314 aaKnown RBP1.77□□□□□ -2.13
CD44-233ENST00000531141 LUZP6Q538Z0 58 aa1.77□□□□□ -2.13
CD44-233ENST00000531141 SPIN3Q5JUX0 258 aa1.77□□□□□ -2.13
CD44-233ENST00000531141 Q6ZSR6 202 aa1.77□□□□□ -2.13
CD44-233ENST00000531141 COPS6Q7L5N1 327 aa1.77□□□□□ -2.13
CD44-233ENST00000531141 DEFB128Q7Z7B8 93 aa1.77□□□□□ -2.13
CD44-233ENST00000531141 UNC93AQ86WB7 457 aa1.77□□□□□ -2.13
CD44-233ENST00000531141 KRTAP13-1Q8IUC0 172 aa1.77□□□□□ -2.13
CD44-233ENST00000531141 SLC25A29Q8N8R3 303 aa1.77□□□□□ -2.13
CD44-233ENST00000531141 SLC26A10Q8NG04 563 aa1.77□□□□□ -2.13
CD44-233ENST00000531141 DCAKDQ8WVC6 231 aa1.77□□□□□ -2.13
CD44-233ENST00000531141 TVP23CQ96ET8 276 aa1.77□□□□□ -2.13
CD44-233ENST00000531141 GLT1D1Q96MS3 346 aa1.77□□□□□ -2.13
CD44-233ENST00000531141 C18orf15Q96N68 181 aa1.77□□□□□ -2.13
CD44-233ENST00000531141 OPALINQ96PE5 141 aa1.77□□□□□ -2.13
CD44-233ENST00000531141 SEC22CQ9BRL7 303 aa1.77□□□□□ -2.13
CD44-233ENST00000531141 TM2D3Q9BRN9 247 aa1.77□□□□□ -2.13
CD44-233ENST00000531141 ANGPTL4Q9BY76 406 aa1.77□□□□□ -2.13
CD44-233ENST00000531141 PORCNQ9H237 461 aa1.77□□□□□ -2.13
CD44-233ENST00000531141 LINC00574Q9H8X3 128 aa1.77□□□□□ -2.13
CD44-233ENST00000531141 CD209Q9NNX6 404 aa1.77□□□□□ -2.13
CD44-233ENST00000531141 TREX1Q9NSU2 369 aa1.77□□□□□ -2.13
CD44-233ENST00000531141 MCUBQ9NWR8 336 aa1.77□□□□□ -2.13
CD44-233ENST00000531141 ZNF229Q9UJW7 825 aa1.77□□□□□ -2.13
CD44-233ENST00000531141 TBC1D24Q9ULP9 559 aa1.77□□□□□ -2.13
CD44-233ENST00000531141 FARSAQ9Y285 508 aaKnown RBP1.77□□□□□ -2.13
CD44-233ENST00000531141 ZNF257Q9Y2Q1 563 aa1.77□□□□□ -2.13
CD44-233ENST00000531141 YARS2Q9Y2Z4 477 aaKnown RBP1.77□□□□□ -2.13
CD44-233ENST00000531141 MED23Q9ULK4 1368 aa1.76□□□□□ -2.13
CD44-233ENST00000531141 NBPF19A0A087WUL8 3843 aa1.76□□□□□ -2.13
CD44-233ENST00000531141 A0A0A6YYD5 115 aa1.76□□□□□ -2.13
CD44-233ENST00000531141 A0A1W2PRD5 423 aa1.76□□□□□ -2.13
CD44-233ENST00000531141 XRCC2O43543 280 aa1.76□□□□□ -2.13
CD44-233ENST00000531141 CTNSO60931 367 aa1.76□□□□□ -2.13
CD44-233ENST00000531141 TDP2O95551 362 aa1.76□□□□□ -2.13
CD44-233ENST00000531141 OXTP01178 125 aa1.76□□□□□ -2.13
CD44-233ENST00000531141 IGLV2-8P01709 118 aa1.76□□□□□ -2.13
CD44-233ENST00000531141 TRBV12-3P01733 135 aa1.76□□□□□ -2.13
CD44-233ENST00000531141 IGLV7-43P04211 117 aa1.76□□□□□ -2.13
CD44-233ENST00000531141 TACSTD2P09758 323 aa1.76□□□□□ -2.13
CD44-233ENST00000531141 P0C880 135 aa1.76□□□□□ -2.13
CD44-233ENST00000531141 UBCP0CG48 685 aaKnown RBP1.76□□□□□ -2.13
CD44-233ENST00000531141 CD28P10747 220 aa1.76□□□□□ -2.13
CD44-233ENST00000531141 GABRG2P18507 467 aa1.76□□□□□ -2.13
CD44-233ENST00000531141 GSTM3P21266 225 aa1.76□□□□□ -2.13
CD44-233ENST00000531141 ANP32AP39687 249 aaKnown RBP1.76□□□□□ -2.13
CD44-233ENST00000531141 SLC1A2P43004 574 aa1.76□□□□□ -2.13
CD44-233ENST00000531141 SERPINB8P50452 374 aa1.76□□□□□ -2.13
CD44-233ENST00000531141 AP1S2P56377 157 aa1.76□□□□□ -2.13
CD44-233ENST00000531141 OR2B8PP59922 312 aa1.76□□□□□ -2.13
CD44-233ENST00000531141 ELF3P78545 371 aaPredicted RBP1.76□□□□□ -2.13
CD44-233ENST00000531141 RAD51Q06609 339 aa1.76□□□□□ -2.13
CD44-233ENST00000531141 ZNF33AQ06730 810 aa1.76□□□□□ -2.13
CD44-233ENST00000531141 IL18Q14116 193 aa1.76□□□□□ -2.13
CD44-233ENST00000531141 OR1Q1Q15612 314 aa1.76□□□□□ -2.13
CD44-233ENST00000531141 RPEL1Q2QD12 228 aa1.76□□□□□ -2.13
CD44-233ENST00000531141 C6orf99Q4VX62 202 aa1.76□□□□□ -2.13
CD44-233ENST00000531141 HSP90B2PQ58FF3 399 aa1.76□□□□□ -2.13
CD44-233ENST00000531141 FKBP1CQ5VVH2 108 aa1.76□□□□□ -2.13
CD44-233ENST00000531141 ZFAND6Q6FIF0 208 aa1.76□□□□□ -2.13
CD44-233ENST00000531141 ANGPTL8Q6UXH0 198 aa1.76□□□□□ -2.13
CD44-233ENST00000531141 ZNF664Q8N3J9 261 aa1.76□□□□□ -2.13
CD44-233ENST00000531141 SFXN5Q8TD22 340 aa1.76□□□□□ -2.13
CD44-233ENST00000531141 ASZ1Q8WWH4 475 aa1.76□□□□□ -2.13
CD44-233ENST00000531141 S100PBPQ96BU1 408 aa1.76□□□□□ -2.13
CD44-233ENST00000531141 DYNLL2Q96FJ2 89 aa1.76□□□□□ -2.13
CD44-233ENST00000531141 C9orf72Q96LT7 481 aa1.76□□□□□ -2.13
CD44-233ENST00000531141 SHANK2-AS3Q9BTD1 123 aa1.76□□□□□ -2.13
CD44-233ENST00000531141 SFXN3Q9BWM7 321 aa1.76□□□□□ -2.13
CD44-233ENST00000531141 CARHSP1Q9Y2V2 147 aaKnown RBP1.76□□□□□ -2.13
CD44-233ENST00000531141 UBR2Q8IWV8 1755 aa1.76□□□□□ -2.13
CD44-233ENST00000531141 LRRC37AA6NMS7 1700 aa1.76□□□□□ -2.13
CD44-233ENST00000531141 NAV3Q8IVL0 2385 aa1.76□□□□□ -2.13
CD44-233ENST00000531141 PTPRQQ9UMZ3 2332 aa1.75□□□□□ -2.13
CD44-233ENST00000531141 URB1O60287 2271 aaKnown RBP1.75□□□□□ -2.13
CD44-233ENST00000531141 COL5A1P20908 1838 aaPredicted RBP1.75□□□□□ -2.13
CD44-233ENST00000531141 ECM29Q5VYK3 1845 aa1.75□□□□□ -2.13
CD44-233ENST00000531141 LRRK2Q5S007 2527 aa1.75□□□□□ -2.13
CD44-233ENST00000531141 FANCMQ8IYD8 2048 aa1.75□□□□□ -2.13
CD44-233ENST00000531141 A8MWL6 223 aa1.75□□□□□ -2.13
CD44-233ENST00000531141 H0YIV9 168 aa1.75□□□□□ -2.13
CD44-233ENST00000531141 PSPHP1O15172 72 aa1.75□□□□□ -2.13
CD44-233ENST00000531141 NEMFO60524 1076 aa1.75□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms