RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 ERVFRD-1P60508 538 aa16.86■□□□□ 0.29
VPS28-206ENST00000526734 ZNF146Q15072 292 aa16.86■□□□□ 0.29
VPS28-206ENST00000526734 SMN1Q16637 294 aaKnown RBP16.86■□□□□ 0.29
VPS28-206ENST00000526734 RPL22L1Q6P5R6 122 aaKnown RBP16.86■□□□□ 0.29
VPS28-206ENST00000526734 GDPGP1Q6ZNW5 385 aa16.86■□□□□ 0.29
VPS28-206ENST00000526734 ZSCAN4Q8NAM6 433 aaPredicted RBP16.86■□□□□ 0.29
VPS28-206ENST00000526734 OR5R1Q8NH85 324 aa16.86■□□□□ 0.29
VPS28-206ENST00000526734 TSEN15Q8WW01 171 aaKnown RBP16.86■□□□□ 0.29
VPS28-206ENST00000526734 MEIOCA2RUB1 952 aa16.85■□□□□ 0.29
VPS28-206ENST00000526734 E9PI62 339 aa16.85■□□□□ 0.29
VPS28-206ENST00000526734 ANGPTL7O43827 346 aa16.85■□□□□ 0.29
VPS28-206ENST00000526734 IGHV4-59P01825 116 aa16.85■□□□□ 0.29
VPS28-206ENST00000526734 CD2P06729 351 aa16.85■□□□□ 0.29
VPS28-206ENST00000526734 ADARB1P78563 741 aaKnown RBP16.85■□□□□ 0.29
VPS28-206ENST00000526734 OGFRL1Q5TC84 451 aaPredicted RBP16.85■□□□□ 0.29
VPS28-206ENST00000526734 OR4M1Q8NGD0 313 aa16.85■□□□□ 0.29
VPS28-206ENST00000526734 CNIH3Q8TBE1 160 aa16.85■□□□□ 0.29
VPS28-206ENST00000526734 PDCD1LG2Q9BQ51 273 aa16.85■□□□□ 0.29
VPS28-206ENST00000526734 SLITRK2Q9H156 845 aa16.85■□□□□ 0.29
VPS28-206ENST00000526734 BEX1Q9HBH7 125 aa16.85■□□□□ 0.29
VPS28-206ENST00000526734 HMG20AQ9NP66 347 aa16.85■□□□□ 0.29
VPS28-206ENST00000526734 TNFRSF19Q9NS68 423 aa16.85■□□□□ 0.29
VPS28-206ENST00000526734 RBFOX1Q9NWB1 397 aaKnown RBP16.85■□□□□ 0.29
VPS28-206ENST00000526734 CHCHD3Q9NX63 227 aaKnown RBP16.85■□□□□ 0.29
VPS28-206ENST00000526734 TENM1Q9UKZ4 2725 aa16.84■□□□□ 0.29
VPS28-206ENST00000526734 GPR137BO60478 399 aa16.84■□□□□ 0.29
VPS28-206ENST00000526734 KDM4BO94953 1096 aa16.84■□□□□ 0.29
VPS28-206ENST00000526734 HCKP08631 526 aa16.84■□□□□ 0.29
VPS28-206ENST00000526734 PRKACAP17612 351 aa16.84■□□□□ 0.29
VPS28-206ENST00000526734 BCL3P20749 454 aa16.84■□□□□ 0.29
VPS28-206ENST00000526734 RAG2P55895 527 aa16.84■□□□□ 0.29
VPS28-206ENST00000526734 EDDM3BP56851 147 aa16.84■□□□□ 0.29
VPS28-206ENST00000526734 CDK5R1Q15078 307 aa16.84■□□□□ 0.29
VPS28-206ENST00000526734 HCP5Q6MZN7 132 aa16.84■□□□□ 0.29
VPS28-206ENST00000526734 BEND2Q8NDZ0 799 aa16.84■□□□□ 0.29
VPS28-206ENST00000526734 RPS4Y2Q8TD47 263 aa16.84■□□□□ 0.29
VPS28-206ENST00000526734 GPR148Q8TDV2 347 aa16.84■□□□□ 0.29
VPS28-206ENST00000526734 VPREB3Q9UKI3 123 aa16.84■□□□□ 0.29
VPS28-206ENST00000526734 hADV38S2A0JD32 116 aa16.83■□□□□ 0.28
VPS28-206ENST00000526734 C17orf98A8MV24 154 aa16.83■□□□□ 0.28
VPS28-206ENST00000526734 SH2D1BO14796 132 aa16.83■□□□□ 0.28
VPS28-206ENST00000526734 MGST3O14880 152 aa16.83■□□□□ 0.28
VPS28-206ENST00000526734 MAGEB3O15480 346 aa16.83■□□□□ 0.28
VPS28-206ENST00000526734 SPRY1O43609 319 aaPredicted RBP16.83■□□□□ 0.28
VPS28-206ENST00000526734 INMTO95050 263 aa16.83■□□□□ 0.28
VPS28-206ENST00000526734 CLIC3O95833 236 aa16.83■□□□□ 0.28
VPS28-206ENST00000526734 PIPP12273 146 aaPredicted RBP16.83■□□□□ 0.28
VPS28-206ENST00000526734 RAB3AP20336 220 aa16.83■□□□□ 0.28
VPS28-206ENST00000526734 CAPGP40121 348 aa16.83■□□□□ 0.28
VPS28-206ENST00000526734 NPBWR2P48146 333 aa16.83■□□□□ 0.28
VPS28-206ENST00000526734 ETV1P50549 477 aa16.83■□□□□ 0.28
VPS28-206ENST00000526734 BMXP51813 675 aa16.83■□□□□ 0.28
VPS28-206ENST00000526734 ZNF273Q14593 569 aa16.83■□□□□ 0.28
VPS28-206ENST00000526734 AANATQ16613 207 aa16.83■□□□□ 0.28
VPS28-206ENST00000526734 C8orf59Q8N0T1 100 aaPredicted RBP16.83■□□□□ 0.28
VPS28-206ENST00000526734 C11orf42Q8N5U0 333 aa16.83■□□□□ 0.28
VPS28-206ENST00000526734 OR52N1Q8NH53 320 aa16.83■□□□□ 0.28
VPS28-206ENST00000526734 TMEM80Q96HE8 168 aa16.83■□□□□ 0.28
VPS28-206ENST00000526734 EXOSC4Q9NPD3 245 aaKnown RBP16.83■□□□□ 0.28
VPS28-206ENST00000526734 C1RLQ9NZP8 487 aa16.83■□□□□ 0.28
VPS28-206ENST00000526734 A0A1W2PRD5 423 aa16.82■□□□□ 0.28
VPS28-206ENST00000526734 A0A1W2PRF3 423 aa16.82■□□□□ 0.28
VPS28-206ENST00000526734 A0A1W2PRM7 423 aa16.82■□□□□ 0.28
VPS28-206ENST00000526734 TMEM82A0PJX8 343 aa16.82■□□□□ 0.28
VPS28-206ENST00000526734 FUOMA2VDF0 154 aa16.82■□□□□ 0.28
VPS28-206ENST00000526734 EFCAB10A6NFE3 127 aa16.82■□□□□ 0.28
VPS28-206ENST00000526734 ZNF728P0DKX0 622 aa16.82■□□□□ 0.28
VPS28-206ENST00000526734 CCL3L1P16619 93 aa16.82■□□□□ 0.28
VPS28-206ENST00000526734 GABRR1P24046 479 aa16.82■□□□□ 0.28
VPS28-206ENST00000526734 ERP29P30040 261 aaKnown RBP16.82■□□□□ 0.28
VPS28-206ENST00000526734 DLX1P56177 255 aa16.82■□□□□ 0.28
VPS28-206ENST00000526734 KISS1Q15726 138 aa16.82■□□□□ 0.28
VPS28-206ENST00000526734 GRK1Q15835 563 aa16.82■□□□□ 0.28
VPS28-206ENST00000526734 C17orf107Q6ZR85 190 aa16.82■□□□□ 0.28
VPS28-206ENST00000526734 CHST4Q8NCG5 386 aa16.82■□□□□ 0.28
VPS28-206ENST00000526734 DCLRE1BQ9H816 532 aa16.82■□□□□ 0.28
VPS28-206ENST00000526734 BABAM2Q9NXR7 383 aa16.82■□□□□ 0.28
VPS28-206ENST00000526734 CNOT2Q9NZN8 540 aaKnown RBP16.82■□□□□ 0.28
VPS28-206ENST00000526734 LINC00312Q9Y6C7 94 aa16.82■□□□□ 0.28
VPS28-206ENST00000526734 IGKV1-12A0A0C4DH73 117 aa16.81■□□□□ 0.28
VPS28-206ENST00000526734 IGKV1D-12P01611 117 aa16.81■□□□□ 0.28
VPS28-206ENST00000526734 MDKP21741 143 aaPredicted RBP16.81■□□□□ 0.28
VPS28-206ENST00000526734 GTF2A1P52655 376 aaPredicted RBP16.81■□□□□ 0.28
VPS28-206ENST00000526734 DLX6P56179 175 aa16.81■□□□□ 0.28
VPS28-206ENST00000526734 LGALS4P56470 323 aa16.81■□□□□ 0.28
VPS28-206ENST00000526734 PRB3Q04118 309 aaPredicted RBP16.81■□□□□ 0.28
VPS28-206ENST00000526734 ZNF529Q6P280 563 aa16.81■□□□□ 0.28
VPS28-206ENST00000526734 PNKDQ8N490 385 aa16.81■□□□□ 0.28
VPS28-206ENST00000526734 PXT1Q8NFP0 134 aa16.81■□□□□ 0.28
VPS28-206ENST00000526734 OR13D1Q8NGV5 346 aa16.81■□□□□ 0.28
VPS28-206ENST00000526734 RFT1Q96AA3 541 aa16.81■□□□□ 0.28
VPS28-206ENST00000526734 SMIM19Q96E16 107 aa16.81■□□□□ 0.28
VPS28-206ENST00000526734 ZNF714Q96N38 554 aa16.81■□□□□ 0.28
VPS28-206ENST00000526734 OGG1O15527 345 aa16.8■□□□□ 0.28
VPS28-206ENST00000526734 TMEM225BP0DP42 221 aa16.8■□□□□ 0.28
VPS28-206ENST00000526734 LMO1P25800 156 aa16.8■□□□□ 0.28
VPS28-206ENST00000526734 MTNR1BP49286 362 aa16.8■□□□□ 0.28
VPS28-206ENST00000526734 TAS2R43P59537 309 aa16.8■□□□□ 0.28
VPS28-206ENST00000526734 ZP1P60852 638 aa16.8■□□□□ 0.28
VPS28-206ENST00000526734 EDDM3AQ14507 147 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms