RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 MRPL54Q6P161 138 aaKnown RBP10.02□□□□□ -0.81
LIMCH1-208ENST00000508501 RPS19BP1Q86WX3 136 aaKnown RBP10.02□□□□□ -0.81
LIMCH1-208ENST00000508501 HIST1H4GQ99525 98 aa10.02□□□□□ -0.81
LIMCH1-208ENST00000508501 OPN3Q9H1Y3 402 aaPredicted RBP10.02□□□□□ -0.81
LIMCH1-208ENST00000508501 V9GYH0 126 aa10.02□□□□□ -0.81
LIMCH1-208ENST00000508501 MYH6P13533 1939 aa10.02□□□□□ -0.81
LIMCH1-208ENST00000508501 IGLV3-10A0A075B6K4 115 aa10.01□□□□□ -0.81
LIMCH1-208ENST00000508501 LOC105378220A0A1B0GUY1 285 aaPredicted RBP10.01□□□□□ -0.81
LIMCH1-208ENST00000508501 HMX2A2RU54 273 aa10.01□□□□□ -0.81
LIMCH1-208ENST00000508501 TNFRSF1AP19438 455 aa10.01□□□□□ -0.81
LIMCH1-208ENST00000508501 ACP1P24666 158 aa10.01□□□□□ -0.81
LIMCH1-208ENST00000508501 GPR3P46089 330 aa10.01□□□□□ -0.81
LIMCH1-208ENST00000508501 MRPL58Q14197 206 aaKnown RBP10.01□□□□□ -0.81
LIMCH1-208ENST00000508501 KISS1Q15726 138 aa10.01□□□□□ -0.81
LIMCH1-208ENST00000508501 ZNF880Q6PDB4 577 aa10.01□□□□□ -0.81
LIMCH1-208ENST00000508501 SLC36A1Q7Z2H8 476 aa10.01□□□□□ -0.81
LIMCH1-208ENST00000508501 C16orf82Q7Z2V1 217 aa10.01□□□□□ -0.81
LIMCH1-208ENST00000508501 TGIF2LXQ8IUE1 241 aa10.01□□□□□ -0.81
LIMCH1-208ENST00000508501 ABHD1Q96SE0 405 aa10.01□□□□□ -0.81
LIMCH1-208ENST00000508501 C1QTNF6Q9BXI9 259 aa10.01□□□□□ -0.81
LIMCH1-208ENST00000508501 CRXO43186 299 aaPredicted RBP10.01□□□□□ -0.81
LIMCH1-208ENST00000508501 GOSR1O95249 250 aa10.01□□□□□ -0.81
LIMCH1-208ENST00000508501 EWSR1Q01844 656 aaKnown RBP eCLIP10.01□□□□□ -0.81
LIMCH1-208ENST00000508501 EIF3IQ13347 325 aaKnown RBP10.01□□□□□ -0.81
LIMCH1-208ENST00000508501 PUSL1Q8N0Z8 303 aaKnown RBP10.01□□□□□ -0.81
LIMCH1-208ENST00000508501 RHBDD1Q8TEB9 315 aa10.01□□□□□ -0.81
LIMCH1-208ENST00000508501 RPEQ96AT9 228 aa10.01□□□□□ -0.81
LIMCH1-208ENST00000508501 ARHGAP5-AS1Q96IT6 56 aa10.01□□□□□ -0.81
LIMCH1-208ENST00000508501 RARRES2Q99969 163 aa10.01□□□□□ -0.81
LIMCH1-208ENST00000508501 AMMECR1Q9Y4X0 333 aaPredicted RBP10.01□□□□□ -0.81
LIMCH1-208ENST00000508501 A0A087WUJ7 227 aa10.01□□□□□ -0.81
LIMCH1-208ENST00000508501 RBFOX2O43251 390 aaKnown RBP eCLIP10.01□□□□□ -0.81
LIMCH1-208ENST00000508501 CD74P04233 296 aa10.01□□□□□ -0.81
LIMCH1-208ENST00000508501 RPS20P60866 119 aaKnown RBP10.01□□□□□ -0.81
LIMCH1-208ENST00000508501 METRNLQ641Q3 311 aa10.01□□□□□ -0.81
LIMCH1-208ENST00000508501 DEFB119Q8N690 84 aa10.01□□□□□ -0.81
LIMCH1-208ENST00000508501 ZNF740Q8NDX6 193 aa10.01□□□□□ -0.81
LIMCH1-208ENST00000508501 NOXO1Q8NFA2 376 aa10.01□□□□□ -0.81
LIMCH1-208ENST00000508501 SLC52A3Q9NQ40 469 aa10.01□□□□□ -0.81
LIMCH1-208ENST00000508501 ERRFI1Q9UJM3 462 aaPredicted RBP10.01□□□□□ -0.81
LIMCH1-208ENST00000508501 LRP12Q9Y561 859 aa10.01□□□□□ -0.81
LIMCH1-208ENST00000508501 RBP4P02753 201 aa10.01□□□□□ -0.81
LIMCH1-208ENST00000508501 FAM157CP0CG43 387 aa10.01□□□□□ -0.81
LIMCH1-208ENST00000508501 EPHA8P29322 1005 aaPredicted RBP10.01□□□□□ -0.81
LIMCH1-208ENST00000508501 TMEM40Q8WWA1 233 aa10.01□□□□□ -0.81
LIMCH1-208ENST00000508501 SNRNP40Q96DI7 357 aaKnown RBP10.01□□□□□ -0.81
LIMCH1-208ENST00000508501 ALG14Q96F25 216 aa10.01□□□□□ -0.81
LIMCH1-208ENST00000508501 THOC3Q96J01 351 aaKnown RBP10.01□□□□□ -0.81
LIMCH1-208ENST00000508501 HS3ST3A1Q9Y663 406 aa10.01□□□□□ -0.81
LIMCH1-208ENST00000508501 FAM221AA4D161 298 aa10□□□□□ -0.81
LIMCH1-208ENST00000508501 FRG2CA6NGY1 282 aa10□□□□□ -0.81
LIMCH1-208ENST00000508501 OR4C46A6NHA9 309 aa10□□□□□ -0.81
LIMCH1-208ENST00000508501 OGG1O15527 345 aa10□□□□□ -0.81
LIMCH1-208ENST00000508501 SOD3P08294 240 aa10□□□□□ -0.81
LIMCH1-208ENST00000508501 DNLZQ5SXM8 178 aa10□□□□□ -0.81
LIMCH1-208ENST00000508501 CALHM1Q8IU99 346 aa10□□□□□ -0.81
LIMCH1-208ENST00000508501 TUSC5Q8IXB3 177 aa10□□□□□ -0.81
LIMCH1-208ENST00000508501 FAM216AQ8WUB2 273 aa10□□□□□ -0.81
LIMCH1-208ENST00000508501 CLN8Q9UBY8 286 aa10□□□□□ -0.81
LIMCH1-208ENST00000508501 TUBD1Q9UJT1 453 aa10□□□□□ -0.81
LIMCH1-208ENST00000508501 A0A1W2PR48 441 aa10□□□□□ -0.81
LIMCH1-208ENST00000508501 EIF3GO75821 320 aaKnown RBP eCLIP10□□□□□ -0.81
LIMCH1-208ENST00000508501 NGFP01138 241 aa10□□□□□ -0.81
LIMCH1-208ENST00000508501 POU2F2P09086 479 aa10□□□□□ -0.81
LIMCH1-208ENST00000508501 PSG5Q15238 335 aa10□□□□□ -0.81
LIMCH1-208ENST00000508501 CRYGNQ8WXF5 182 aa10□□□□□ -0.81
LIMCH1-208ENST00000508501 GGACTQ9BVM4 153 aa10□□□□□ -0.81
LIMCH1-208ENST00000508501 UFC1Q9Y3C8 167 aa10□□□□□ -0.81
LIMCH1-208ENST00000508501 TCRBV5S1A1TA0A578 114 aa10□□□□□ -0.81
LIMCH1-208ENST00000508501 SIGLEC5O15389 551 aa10□□□□□ -0.81
LIMCH1-208ENST00000508501 PAGE4O60829 102 aa10□□□□□ -0.81
LIMCH1-208ENST00000508501 SNAI1O95863 264 aaPredicted RBP10□□□□□ -0.81
LIMCH1-208ENST00000508501 BHLHE23Q8NDY6 225 aa10□□□□□ -0.81
LIMCH1-208ENST00000508501 OR1F12Q8NHA8 337 aa10□□□□□ -0.81
LIMCH1-208ENST00000508501 PRNDQ9UKY0 176 aa10□□□□□ -0.81
LIMCH1-208ENST00000508501 SIGLEC7Q9Y286 467 aa10□□□□□ -0.81
LIMCH1-208ENST00000508501 KLF13Q9Y2Y9 288 aaPredicted RBP10□□□□□ -0.81
LIMCH1-208ENST00000508501 CDC14BO60729 498 aa10□□□□□ -0.81
LIMCH1-208ENST00000508501 MOSPD3O75425 235 aa10□□□□□ -0.81
LIMCH1-208ENST00000508501 PRSS23O95084 383 aa10□□□□□ -0.81
LIMCH1-208ENST00000508501 EPPINO95925 133 aa10□□□□□ -0.81
LIMCH1-208ENST00000508501 TRGC2P03986 189 aa10□□□□□ -0.81
LIMCH1-208ENST00000508501 SEMG1P04279 462 aa10□□□□□ -0.81
LIMCH1-208ENST00000508501 PRR35P0CG20 571 aa10□□□□□ -0.81
LIMCH1-208ENST00000508501 MFAP2P55001 183 aa10□□□□□ -0.81
LIMCH1-208ENST00000508501 KLF3P57682 345 aaPredicted RBP10□□□□□ -0.81
LIMCH1-208ENST00000508501 C21orf58P58505 322 aa10□□□□□ -0.81
LIMCH1-208ENST00000508501 POLR2GP62487 172 aaKnown RBP eCLIP10□□□□□ -0.81
LIMCH1-208ENST00000508501 JAG1P78504 1218 aa10□□□□□ -0.81
LIMCH1-208ENST00000508501 KLF9Q13886 244 aaPredicted RBP10□□□□□ -0.81
LIMCH1-208ENST00000508501 ZNF506Q5JVG8 444 aa10□□□□□ -0.81
LIMCH1-208ENST00000508501 FAM27D1Q5T7N8 215 aa10□□□□□ -0.81
LIMCH1-208ENST00000508501 DMKNQ6E0U4 476 aaPredicted RBP10□□□□□ -0.81
LIMCH1-208ENST00000508501 OR11H7Q8NGC8 314 aa10□□□□□ -0.81
LIMCH1-208ENST00000508501 OR10AG1Q8NH19 301 aa10□□□□□ -0.81
LIMCH1-208ENST00000508501 ATOH1Q92858 354 aaPredicted RBP10□□□□□ -0.81
LIMCH1-208ENST00000508501 FGF21Q9NSA1 209 aa10□□□□□ -0.81
LIMCH1-208ENST00000508501 CLDN16Q9Y5I7 305 aa10□□□□□ -0.81
LIMCH1-208ENST00000508501 PIK3C2BO00750 1634 aa10□□□□□ -0.81
LIMCH1-208ENST00000508501 A1L4Q6 167 aa9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms