RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 GLI4P10075 376 aa8.51□□□□□ -1.05
CLIP1-204ENST00000501271 NPBWR2P48146 333 aa8.51□□□□□ -1.05
CLIP1-204ENST00000501271 RBM11P57052 281 aaKnown RBP8.51□□□□□ -1.05
CLIP1-204ENST00000501271 SRYQ05066 204 aa8.51□□□□□ -1.05
CLIP1-204ENST00000501271 ABCA11PQ4W5N1 156 aa8.51□□□□□ -1.05
CLIP1-204ENST00000501271 C9orf135Q5VTT2 229 aa8.51□□□□□ -1.05
CLIP1-204ENST00000501271 TMEM268Q5VZI3 342 aa8.51□□□□□ -1.05
CLIP1-204ENST00000501271 LDLRAD3Q86YD5 345 aa8.51□□□□□ -1.05
CLIP1-204ENST00000501271 SVBPQ8N300 66 aa8.51□□□□□ -1.05
CLIP1-204ENST00000501271 ZNF611Q8N823 705 aa8.51□□□□□ -1.05
CLIP1-204ENST00000501271 CLRN3Q8NCR9 226 aa8.51□□□□□ -1.05
CLIP1-204ENST00000501271 OR5L1Q8NGL2 311 aa8.51□□□□□ -1.05
CLIP1-204ENST00000501271 SPSB4Q96A44 273 aa8.51□□□□□ -1.05
CLIP1-204ENST00000501271 TMEM45BQ96B21 275 aa8.51□□□□□ -1.05
CLIP1-204ENST00000501271 SMIM8Q96KF7 97 aa8.51□□□□□ -1.05
CLIP1-204ENST00000501271 SIGLEC12Q96PQ1 595 aa8.51□□□□□ -1.05
CLIP1-204ENST00000501271 PRRX2Q99811 253 aa8.51□□□□□ -1.05
CLIP1-204ENST00000501271 HES7Q9BYE0 225 aa8.51□□□□□ -1.05
CLIP1-204ENST00000501271 SMIM3Q9BZL3 60 aa8.51□□□□□ -1.05
CLIP1-204ENST00000501271 TLNRD1Q9H1K6 362 aa8.51□□□□□ -1.05
CLIP1-204ENST00000501271 SLC2A9Q9NRM0 540 aa8.51□□□□□ -1.05
CLIP1-204ENST00000501271 CRIM1Q9NZV1 1036 aa8.51□□□□□ -1.05
CLIP1-204ENST00000501271 AMDHD2Q9Y303 409 aa8.51□□□□□ -1.05
CLIP1-204ENST00000501271 NOSIPQ9Y314 301 aaKnown RBP8.51□□□□□ -1.05
CLIP1-204ENST00000501271 DNAJC13O75165 2243 aa8.51□□□□□ -1.05
CLIP1-204ENST00000501271 F8W036 122 aa8.51□□□□□ -1.05
CLIP1-204ENST00000501271 NEURL1O76050 574 aa8.51□□□□□ -1.05
CLIP1-204ENST00000501271 FARS2O95363 451 aaKnown RBP8.51□□□□□ -1.05
CLIP1-204ENST00000501271 NME2P22392 152 aa8.51□□□□□ -1.05
CLIP1-204ENST00000501271 BLOC1S1P78537 153 aa8.51□□□□□ -1.05
CLIP1-204ENST00000501271 PJVKQ0ZLH3 352 aa8.51□□□□□ -1.05
CLIP1-204ENST00000501271 C10orf91Q5T1B1 145 aa8.51□□□□□ -1.05
CLIP1-204ENST00000501271 FAM122CQ6P4D5 195 aa8.51□□□□□ -1.05
CLIP1-204ENST00000501271 TMEM88Q6PEY1 159 aa8.51□□□□□ -1.05
CLIP1-204ENST00000501271 IL34Q6ZMJ4 242 aa8.51□□□□□ -1.05
CLIP1-204ENST00000501271 SLC25A26Q70HW3 274 aa8.51□□□□□ -1.05
CLIP1-204ENST00000501271 RAB11FIP2Q7L804 512 aa8.51□□□□□ -1.05
CLIP1-204ENST00000501271 LYZL2Q7Z4W2 148 aa8.51□□□□□ -1.05
CLIP1-204ENST00000501271 OR11L1Q8NGX0 322 aa8.51□□□□□ -1.05
CLIP1-204ENST00000501271 GALNT14Q96FL9 552 aa8.51□□□□□ -1.05
CLIP1-204ENST00000501271 PRDM14Q9GZV8 571 aa8.51□□□□□ -1.05
CLIP1-204ENST00000501271 ZNF703Q9H7S9 590 aaPredicted RBP8.51□□□□□ -1.05
CLIP1-204ENST00000501271 ZNF286AQ9HBT8 521 aa8.51□□□□□ -1.05
CLIP1-204ENST00000501271 TREM1Q9NP99 234 aa8.51□□□□□ -1.05
CLIP1-204ENST00000501271 SLC7A10Q9NS82 523 aa8.51□□□□□ -1.05
CLIP1-204ENST00000501271 BOKQ9UMX3 212 aaPredicted RBP8.51□□□□□ -1.05
CLIP1-204ENST00000501271 FAM96BQ9Y3D0 163 aa8.51□□□□□ -1.05
CLIP1-204ENST00000501271 A0A096LPE4 126 aa8.5□□□□□ -1.05
CLIP1-204ENST00000501271 A0A1W2PPZ6 126 aa8.5□□□□□ -1.05
CLIP1-204ENST00000501271 NUDT19A8MXV4 375 aa8.5□□□□□ -1.05
CLIP1-204ENST00000501271 C9orf172C9J069 976 aa8.5□□□□□ -1.05
CLIP1-204ENST00000501271 MRPL33O75394 65 aaKnown RBP8.5□□□□□ -1.05
CLIP1-204ENST00000501271 FBXO24O75426 580 aa8.5□□□□□ -1.05
CLIP1-204ENST00000501271 MED6O75586 246 aa8.5□□□□□ -1.05
CLIP1-204ENST00000501271 MBPP02686 304 aaPredicted RBP8.5□□□□□ -1.05
CLIP1-204ENST00000501271 CCL2P13500 99 aa8.5□□□□□ -1.05
CLIP1-204ENST00000501271 LHX2P50458 406 aa8.5□□□□□ -1.05
CLIP1-204ENST00000501271 FOXG1P55316 489 aaPredicted RBP8.5□□□□□ -1.05
CLIP1-204ENST00000501271 TMEM33P57088 247 aa8.5□□□□□ -1.05
CLIP1-204ENST00000501271 ARF1P84077 181 aaKnown RBP8.5□□□□□ -1.05
CLIP1-204ENST00000501271 ZXDAP98168 799 aa8.5□□□□□ -1.05
CLIP1-204ENST00000501271 MALLQ13021 153 aa8.5□□□□□ -1.05
CLIP1-204ENST00000501271 SMCO1Q147U7 214 aa8.5□□□□□ -1.05
CLIP1-204ENST00000501271 CLEC9AQ6UXN8 241 aa8.5□□□□□ -1.05
CLIP1-204ENST00000501271 COLCA1Q6ZS62 124 aa8.5□□□□□ -1.05
CLIP1-204ENST00000501271 ERGIC1Q969X5 290 aa8.5□□□□□ -1.05
CLIP1-204ENST00000501271 MOB3AQ96BX8 217 aa8.5□□□□□ -1.05
CLIP1-204ENST00000501271 SAT2Q96F10 170 aaPredicted RBP8.5□□□□□ -1.05
CLIP1-204ENST00000501271 FGF23Q9GZV9 251 aaPredicted RBP8.5□□□□□ -1.05
CLIP1-204ENST00000501271 UQCC1Q9NVA1 299 aa8.5□□□□□ -1.05
CLIP1-204ENST00000501271 PARPBPQ9NWS1 579 aa8.5□□□□□ -1.05
CLIP1-204ENST00000501271 PURGQ9UJV8 347 aaKnown RBP8.5□□□□□ -1.05
CLIP1-204ENST00000501271 CARHSP1Q9Y2V2 147 aaKnown RBP8.5□□□□□ -1.05
CLIP1-204ENST00000501271 KCNIP3Q9Y2W7 256 aa8.5□□□□□ -1.05
CLIP1-204ENST00000501271 TNRC6AQ8NDV7 1962 aaKnown RBP8.5□□□□□ -1.05
CLIP1-204ENST00000501271 MED13Q9UHV7 2174 aa8.5□□□□□ -1.05
CLIP1-204ENST00000501271 IGKV3D-15A0A087WSY6 115 aa8.5□□□□□ -1.05
CLIP1-204ENST00000501271 ZNF503-AS2A6NEH8 195 aa8.5□□□□□ -1.05
CLIP1-204ENST00000501271 OR7C1O76099 320 aaPredicted RBP8.5□□□□□ -1.05
CLIP1-204ENST00000501271 CST4P01036 141 aa8.5□□□□□ -1.05
CLIP1-204ENST00000501271 MUC1P15941 1255 aaPredicted RBP8.5□□□□□ -1.05
CLIP1-204ENST00000501271 ZNF16P17020 682 aaPredicted RBP8.5□□□□□ -1.05
CLIP1-204ENST00000501271 CCNOP22674 350 aa8.5□□□□□ -1.05
CLIP1-204ENST00000501271 ID4P47928 161 aa8.5□□□□□ -1.05
CLIP1-204ENST00000501271 SULT1A2P50226 295 aa8.5□□□□□ -1.05
CLIP1-204ENST00000501271 CLDN18P56856 261 aa8.5□□□□□ -1.05
CLIP1-204ENST00000501271 EIF5AP63241 154 aaKnown RBP8.5□□□□□ -1.05
CLIP1-204ENST00000501271 CDCP2Q5VXM1 449 aa8.5□□□□□ -1.05
CLIP1-204ENST00000501271 OR2M7Q8NG81 312 aa8.5□□□□□ -1.05
CLIP1-204ENST00000501271 OR56B2PQ8NGI1 322 aa8.5□□□□□ -1.05
CLIP1-204ENST00000501271 MSI2Q96DH6 328 aaKnown RBP8.5□□□□□ -1.05
CLIP1-204ENST00000501271 BSCL2Q96G97 398 aaPredicted RBP8.5□□□□□ -1.05
CLIP1-204ENST00000501271 C18orf12Q96KH6 178 aa8.5□□□□□ -1.05
CLIP1-204ENST00000501271 TECTBQ96PL2 329 aa8.5□□□□□ -1.05
CLIP1-204ENST00000501271 SPRY4Q9C004 299 aa8.5□□□□□ -1.05
CLIP1-204ENST00000501271 ZNF442Q9H7R0 627 aa8.5□□□□□ -1.05
CLIP1-204ENST00000501271 RHOFQ9HBH0 211 aa8.5□□□□□ -1.05
CLIP1-204ENST00000501271 FOXJ2Q9P0K8 574 aa8.5□□□□□ -1.05
CLIP1-204ENST00000501271 STARD10Q9Y365 291 aa8.5□□□□□ -1.05
CLIP1-204ENST00000501271 ARHGAP21Q5T5U3 1957 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms