RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 ADAM11O75078 769 aa14.39□□□□□ -0.11
CCDC88B-209ENST00000494080 ACTL6BO94805 426 aa14.39□□□□□ -0.11
CCDC88B-209ENST00000494080 CCL3P10147 92 aa14.39□□□□□ -0.11
CCDC88B-209ENST00000494080 NOVA1P51513 510 aaKnown RBP14.39□□□□□ -0.11
CCDC88B-209ENST00000494080 DEFB109BQ30KR1 87 aa14.39□□□□□ -0.11
CCDC88B-209ENST00000494080 LIPT2A6NK58 231 aa14.39□□□□□ -0.11
CCDC88B-209ENST00000494080 CDRT15L2A8MXV6 281 aa14.39□□□□□ -0.11
CCDC88B-209ENST00000494080 SPATA46Q5T0L3 261 aa14.39□□□□□ -0.11
CCDC88B-209ENST00000494080 DBX2Q6ZNG2 339 aa14.39□□□□□ -0.11
CCDC88B-209ENST00000494080 OR10D3Q8NH80 312 aa14.39□□□□□ -0.11
CCDC88B-209ENST00000494080 ADAM19Q9H013 955 aa14.39□□□□□ -0.11
CCDC88B-209ENST00000494080 PRDM6Q9NQX0 595 aa14.39□□□□□ -0.11
CCDC88B-209ENST00000494080 RCC2Q9P258 522 aaKnown RBP14.39□□□□□ -0.11
CCDC88B-209ENST00000494080 DOCK8Q8NF50 2099 aa14.39□□□□□ -0.11
CCDC88B-209ENST00000494080 ONECUT2O95948 504 aa14.39□□□□□ -0.11
CCDC88B-209ENST00000494080 NGFRP08138 427 aa14.39□□□□□ -0.11
CCDC88B-209ENST00000494080 BAXQ07812 192 aa14.39□□□□□ -0.11
CCDC88B-209ENST00000494080 COTL1Q14019 142 aa14.39□□□□□ -0.11
CCDC88B-209ENST00000494080 TGIF1Q15583 401 aa14.39□□□□□ -0.11
CCDC88B-209ENST00000494080 ZNF774Q6NX45 483 aa14.39□□□□□ -0.11
CCDC88B-209ENST00000494080 DEGS2Q6QHC5 323 aa14.39□□□□□ -0.11
CCDC88B-209ENST00000494080 CTHRC1Q96CG8 243 aa14.39□□□□□ -0.11
CCDC88B-209ENST00000494080 TMEM68Q96MH6 324 aa14.39□□□□□ -0.11
CCDC88B-209ENST00000494080 PARP11Q9NR21 331 aa14.39□□□□□ -0.11
CCDC88B-209ENST00000494080 OR5AC2Q9NZP5 309 aa14.39□□□□□ -0.11
CCDC88B-209ENST00000494080 OSGIN2Q9Y236 505 aa14.39□□□□□ -0.11
CCDC88B-209ENST00000494080 ST3GAL6Q9Y274 331 aa14.39□□□□□ -0.11
CCDC88B-209ENST00000494080 LIPGQ9Y5X9 500 aa14.39□□□□□ -0.11
CCDC88B-209ENST00000494080 SNCAP37840 140 aa14.39□□□□□ -0.11
CCDC88B-209ENST00000494080 RAC1P63000 192 aa14.39□□□□□ -0.11
CCDC88B-209ENST00000494080 EDDM3AQ14507 147 aa14.39□□□□□ -0.11
CCDC88B-209ENST00000494080 APOBEC4Q8WW27 367 aaKnown RBP14.39□□□□□ -0.11
CCDC88B-209ENST00000494080 ASB5Q8WWX0 329 aa14.39□□□□□ -0.11
CCDC88B-209ENST00000494080 KLK13Q9UKR3 277 aa14.39□□□□□ -0.11
CCDC88B-209ENST00000494080 ACACAQ13085 2346 aa14.39□□□□□ -0.11
CCDC88B-209ENST00000494080 SERPINE3A8MV23 424 aa14.38□□□□□ -0.11
CCDC88B-209ENST00000494080 INSM1Q01101 510 aaPredicted RBP14.38□□□□□ -0.11
CCDC88B-209ENST00000494080 BTF3L4Q96K17 158 aa14.38□□□□□ -0.11
CCDC88B-209ENST00000494080 ARV1Q9H2C2 271 aa14.38□□□□□ -0.11
CCDC88B-209ENST00000494080 RBFOX3A6NFN3 312 aa14.38□□□□□ -0.11
CCDC88B-209ENST00000494080 BGLAPP02818 100 aa14.38□□□□□ -0.11
CCDC88B-209ENST00000494080 ZNF32P17041 273 aa14.38□□□□□ -0.11
CCDC88B-209ENST00000494080 OR1F12Q8NHA8 337 aa14.38□□□□□ -0.11
CCDC88B-209ENST00000494080 HIST1H2BAQ96A08 127 aa14.38□□□□□ -0.11
CCDC88B-209ENST00000494080 OR51I2Q9H344 312 aa14.38□□□□□ -0.11
CCDC88B-209ENST00000494080 TCFL5Q9UL49 500 aa14.38□□□□□ -0.11
CCDC88B-209ENST00000494080 ZSWIM8A7E2V4 1837 aa14.38□□□□□ -0.11
CCDC88B-209ENST00000494080 FAM24AA6NFZ4 105 aa14.38□□□□□ -0.11
CCDC88B-209ENST00000494080 CELA2AP08217 269 aa14.38□□□□□ -0.11
CCDC88B-209ENST00000494080 KISS1Q15726 138 aa14.38□□□□□ -0.11
CCDC88B-209ENST00000494080 ETFRF1Q6IPR1 90 aa14.38□□□□□ -0.11
CCDC88B-209ENST00000494080 OR4F5Q8NH21 305 aa14.38□□□□□ -0.11
CCDC88B-209ENST00000494080 SLC39A7Q92504 469 aa14.38□□□□□ -0.11
CCDC88B-209ENST00000494080 OR4F4Q96R69 305 aa14.38□□□□□ -0.11
CCDC88B-209ENST00000494080 FAM173AQ9BQD7 235 aa14.38□□□□□ -0.11
CCDC88B-209ENST00000494080 DEGS1O15121 323 aa14.37□□□□□ -0.11
CCDC88B-209ENST00000494080 PDLIM3Q53GG5 364 aaPredicted RBP14.37□□□□□ -0.11
CCDC88B-209ENST00000494080 FHL5Q5TD97 284 aa14.37□□□□□ -0.11
CCDC88B-209ENST00000494080 ASB10Q8WXI3 467 aa14.37□□□□□ -0.11
CCDC88B-209ENST00000494080 TTC28Q96AY4 2481 aa14.37□□□□□ -0.11
CCDC88B-209ENST00000494080 SOCS1O15524 211 aa14.37□□□□□ -0.11
CCDC88B-209ENST00000494080 TUSC2O75896 110 aa14.37□□□□□ -0.11
CCDC88B-209ENST00000494080 ZIC2O95409 532 aaPredicted RBP14.37□□□□□ -0.11
CCDC88B-209ENST00000494080 ZNF25P17030 456 aaPredicted RBP14.37□□□□□ -0.11
CCDC88B-209ENST00000494080 TNFSF4P23510 183 aa14.37□□□□□ -0.11
CCDC88B-209ENST00000494080 PCP4P48539 62 aa14.37□□□□□ -0.11
CCDC88B-209ENST00000494080 ERVK-16P61578 105 aa14.37□□□□□ -0.11
CCDC88B-209ENST00000494080 DMWDQ09019 674 aa14.37□□□□□ -0.11
CCDC88B-209ENST00000494080 MICBQ29980 383 aa14.37□□□□□ -0.11
CCDC88B-209ENST00000494080 PMS2CLQ68D20 193 aa14.37□□□□□ -0.11
CCDC88B-209ENST00000494080 GCNT2Q8N0V5 402 aa14.37□□□□□ -0.11
CCDC88B-209ENST00000494080 KISS1RQ969F8 398 aaPredicted RBP14.37□□□□□ -0.11
CCDC88B-209ENST00000494080 UCN2Q96RP3 112 aa14.37□□□□□ -0.11
CCDC88B-209ENST00000494080 ACTL6AO96019 429 aa14.37□□□□□ -0.11
CCDC88B-209ENST00000494080 ID4P47928 161 aa14.37□□□□□ -0.11
CCDC88B-209ENST00000494080 SLC36A1Q7Z2H8 476 aa14.37□□□□□ -0.11
CCDC88B-209ENST00000494080 C20orf196Q8IYI0 205 aa14.37□□□□□ -0.11
CCDC88B-209ENST00000494080 EIF4E3Q8N5X7 224 aaKnown RBP14.37□□□□□ -0.11
CCDC88B-209ENST00000494080 RPS4Y2Q8TD47 263 aa14.37□□□□□ -0.11
CCDC88B-209ENST00000494080 PP6455Q8WZ26 134 aa14.37□□□□□ -0.11
CCDC88B-209ENST00000494080 RYDENQ9NUL5 291 aaKnown RBP14.37□□□□□ -0.11
CCDC88B-209ENST00000494080 XKRY2A2RUG3 117 aa14.37□□□□□ -0.11
CCDC88B-209ENST00000494080 SLC22A20A6NK97 555 aa14.37□□□□□ -0.11
CCDC88B-209ENST00000494080 ZBTB25P24278 435 aa14.37□□□□□ -0.11
CCDC88B-209ENST00000494080 EDDM3BP56851 147 aa14.37□□□□□ -0.11
CCDC88B-209ENST00000494080 PKIAP61925 76 aa14.37□□□□□ -0.11
CCDC88B-209ENST00000494080 SSPNQ14714 243 aa14.37□□□□□ -0.11
CCDC88B-209ENST00000494080 ISXQ2M1V0 245 aa14.37□□□□□ -0.11
CCDC88B-209ENST00000494080 ARSJQ5FYB0 599 aaPredicted RBP14.37□□□□□ -0.11
CCDC88B-209ENST00000494080 SPANXN5Q5MJ07 72 aa14.37□□□□□ -0.11
CCDC88B-209ENST00000494080 FBXL14Q8N1E6 418 aa14.37□□□□□ -0.11
CCDC88B-209ENST00000494080 CT55Q8WUE5 264 aa14.37□□□□□ -0.11
CCDC88B-209ENST00000494080 POLEQ07864 2286 aa14.37□□□□□ -0.11
CCDC88B-209ENST00000494080 A0A1W2PR77 199 aa14.36□□□□□ -0.11
CCDC88B-209ENST00000494080 CBY3A6NI87 242 aa14.36□□□□□ -0.11
CCDC88B-209ENST00000494080 IL11P20809 199 aa14.36□□□□□ -0.11
CCDC88B-209ENST00000494080 CD200P41217 278 aa14.36□□□□□ -0.11
CCDC88B-209ENST00000494080 LPAR6P43657 344 aa14.36□□□□□ -0.11
CCDC88B-209ENST00000494080 TLE1Q04724 770 aa14.36□□□□□ -0.11
CCDC88B-209ENST00000494080 MGAT2Q10469 447 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms