RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 MTCP1P56278 107 aa9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 PMP22Q01453 160 aa9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 ZNF66Q6ZN08 573 aa9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 SLC35G3Q8N808 338 aa9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 UBALD1Q8TB05 177 aa9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 TMEM37Q8WXS4 190 aa9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 ST8SIA1Q92185 356 aa9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 C19orf12Q9NSK7 152 aa9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 SLC7A11Q9UPY5 501 aa9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 LAMP3Q9UQV4 416 aa9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 KLF2Q9Y5W3 355 aaPredicted RBP9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 PTPRSQ13332 1948 aa9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 C20orf202A1L168 122 aa9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 HBE1P02100 147 aa9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 SSBP1Q04837 148 aaKnown RBP9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 TRIP6Q15654 476 aaKnown RBP9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 CEACAM16Q2WEN9 425 aa9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 SLC35D3Q5M8T2 416 aa9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 GLIPR1L1Q6UWM5 242 aa9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 GPR87Q9BY21 358 aa9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 BOKQ9UMX3 212 aaPredicted RBP9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 STRAPQ9Y3F4 350 aaKnown RBP9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 USF3Q68DE3 2245 aa9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 NOTCH2Q04721 2471 aa9.47□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 OR7C1O76099 320 aaPredicted RBP9.47□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 GNG10P50151 68 aa9.47□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 DBX2Q6ZNG2 339 aa9.47□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 KISS1RQ969F8 398 aaPredicted RBP9.47□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 NOL4LQ96MY1 436 aaPredicted RBP9.47□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 SYT3Q9BQG1 590 aa9.47□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 ELOVL1Q9BW60 279 aa9.47□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 PIGLQ9Y2B2 252 aa9.47□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 B3GALT5Q9Y2C3 310 aa9.47□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 PLXNA2O75051 1894 aa9.47□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 LOC390937A0A1W2PQ73 354 aa9.47□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 GEMIN2O14893 280 aaKnown RBP9.47□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 TMEM127O75204 238 aa9.47□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 SFTPCP11686 197 aa9.47□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 GNB3P16520 340 aa9.47□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 RPS4Y1P22090 263 aaKnown RBP9.47□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 SRSF3P84103 164 aaKnown RBP9.47□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 PRSS54Q6PEW0 395 aa9.47□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 MCHR2Q969V1 340 aa9.47□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 AK3Q9UIJ7 227 aa9.47□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 LTBP2Q14767 1821 aa9.47□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 A0A0G2JMM0 328 aa9.47□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 LOC101059948A0A1B0GTJ6 334 aa9.47□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 A0A1W2PPB8 328 aa9.47□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 A0A1W2PRS3 328 aa9.47□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 KIR3DP1A8MWS1 328 aa9.47□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 PRR32B1ATL7 298 aa9.47□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 H7BYZ3 331 aa9.47□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 RPLP1P05386 114 aaKnown RBP9.47□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 CD96P40200 585 aa9.47□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 EFNB2P52799 333 aa9.47□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 TLE4Q04727 773 aa9.47□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 PMS2P11Q13670 270 aa9.47□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 OR1C1Q15619 314 aa9.47□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 TMEM128Q5BJH2 165 aa9.47□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 THNSL2Q86YJ6 484 aa9.47□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 ZFP62Q8NB50 900 aaPredicted RBP9.47□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 OR8U1Q8NH10 309 aa9.47□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 CLDN23Q96B33 292 aa9.47□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 BORCS8Q96FH0 119 aa9.47□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 MRGPRX4Q96LA9 322 aa9.47□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 OR8B4Q96RC9 309 aa9.47□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 DDA1Q9BW61 102 aa9.47□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 OPN3Q9H1Y3 402 aaPredicted RBP9.47□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 ZCCHC4Q9H5U6 513 aa9.47□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 PLEKHJ1Q9NW61 149 aa9.47□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 FOXJ2Q9P0K8 574 aa9.47□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 FBXL17Q9UF56 701 aa9.47□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 MCTS1Q9ULC4 181 aaKnown RBP9.47□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 HLA-HP01893 362 aa9.46□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 BGLAPP02818 100 aa9.46□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 TRGC2P03986 189 aa9.46□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 OPRM1P35372 400 aa9.46□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 SNCAP37840 140 aa9.46□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 MAGEA5P43359 124 aa9.46□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 SMIM15Q7Z3B0 74 aa9.46□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 LRP11Q86VZ4 500 aa9.46□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 SLC25A38Q96DW6 304 aa9.46□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 PBOV1Q9GZY1 135 aa9.46□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 RAB22AQ9UL26 194 aa9.46□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 ANKRD11Q6UB99 2663 aaPredicted RBP9.46□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 TMEM265A0A087WTH1 108 aa9.46□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 COLCA2A8K830 154 aa9.46□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 AQP7O14520 342 aa9.46□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 OGG1O15527 345 aa9.46□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 DUS4LO95620 317 aaKnown RBP9.46□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 RFPL3SP0C7P2 107 aa9.46□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 ASAH2BP0C7U1 165 aa9.46□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 HIST1H1BP16401 226 aaKnown RBP9.46□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 BLVRBP30043 206 aaPredicted RBP9.46□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 NAAAQ02083 359 aa9.46□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 ZNF266Q14584 549 aa9.46□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 RAB24Q969Q5 203 aa9.46□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 C4orf45Q96LM5 186 aa9.46□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 SOX7Q9BT81 388 aa9.46□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 GNG13Q9P2W3 67 aa9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms