RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 ZNF14P17017 642 aaPredicted RBP18.1■□□□□ 0.49
CCDC88B-208ENST00000492980 TMEM211Q6ICI0 200 aa18.1■□□□□ 0.49
CCDC88B-208ENST00000492980 FAM214BQ7L5A3 538 aa18.1■□□□□ 0.49
CCDC88B-208ENST00000492980 MYPOPQ86VE0 399 aaPredicted RBP18.1■□□□□ 0.49
CCDC88B-208ENST00000492980 HIST1H2AAQ96QV6 131 aa18.1■□□□□ 0.49
CCDC88B-208ENST00000492980 MICU1Q9BPX6 476 aa18.1■□□□□ 0.49
CCDC88B-208ENST00000492980 ZNF286AQ9HBT8 521 aa18.1■□□□□ 0.49
CCDC88B-208ENST00000492980 ANKRD30BLA7E2S9 258 aa18.1■□□□□ 0.49
CCDC88B-208ENST00000492980 ZNF891A8MT65 544 aaPredicted RBP18.1■□□□□ 0.49
CCDC88B-208ENST00000492980 CEACAM4O75871 244 aa18.1■□□□□ 0.49
CCDC88B-208ENST00000492980 PSMB6P28072 239 aa18.1■□□□□ 0.49
CCDC88B-208ENST00000492980 CYCSP99999 105 aaKnown RBP18.1■□□□□ 0.49
CCDC88B-208ENST00000492980 ACOT7LQ6ZUV0 252 aa18.1■□□□□ 0.49
CCDC88B-208ENST00000492980 VRK1Q99986 396 aaPredicted RBP18.1■□□□□ 0.49
CCDC88B-208ENST00000492980 DHRS9Q9BPW9 319 aa18.1■□□□□ 0.49
CCDC88B-208ENST00000492980 MPC1Q9Y5U8 109 aa18.1■□□□□ 0.49
CCDC88B-208ENST00000492980 TBC1D28Q2M2D7 210 aa18.09■□□□□ 0.49
CCDC88B-208ENST00000492980 MKXQ8IYA7 352 aa18.09■□□□□ 0.49
CCDC88B-208ENST00000492980 MPTX1A8MV57 137 aa18.08■□□□□ 0.49
CCDC88B-208ENST00000492980 SYNGR1O43759 233 aa18.08■□□□□ 0.49
CCDC88B-208ENST00000492980 SPDEFO95238 335 aa18.08■□□□□ 0.49
CCDC88B-208ENST00000492980 IFNA2P01563 188 aa18.08■□□□□ 0.49
CCDC88B-208ENST00000492980 CELA3BP08861 270 aa18.08■□□□□ 0.49
CCDC88B-208ENST00000492980 RRASP10301 218 aa18.08■□□□□ 0.49
CCDC88B-208ENST00000492980 KCNMB2Q9Y691 235 aa18.08■□□□□ 0.49
CCDC88B-208ENST00000492980 BCL2L11O43521 198 aa18.08■□□□□ 0.48
CCDC88B-208ENST00000492980 ZNF205O95201 554 aa18.08■□□□□ 0.48
CCDC88B-208ENST00000492980 CEACAM1P13688 526 aa18.08■□□□□ 0.48
CCDC88B-208ENST00000492980 TGFBR3Q03167 851 aa18.08■□□□□ 0.48
CCDC88B-208ENST00000492980 SPATA46Q5T0L3 261 aa18.08■□□□□ 0.48
CCDC88B-208ENST00000492980 OR2T2Q6IF00 324 aa18.08■□□□□ 0.48
CCDC88B-208ENST00000492980 OR5M9Q8NGP3 310 aa18.08■□□□□ 0.48
CCDC88B-208ENST00000492980 EXTL1Q92935 676 aa18.08■□□□□ 0.48
CCDC88B-208ENST00000492980 WDR13Q9H1Z4 485 aa18.08■□□□□ 0.48
CCDC88B-208ENST00000492980 IL36RNQ9UBH0 155 aa18.08■□□□□ 0.48
CCDC88B-208ENST00000492980 A0A1W2PR80 420 aa18.07■□□□□ 0.48
CCDC88B-208ENST00000492980 CRYM-AS1A6NIL9 109 aa18.07■□□□□ 0.48
CCDC88B-208ENST00000492980 TRAPPC2LH3BP13 241 aa18.07■□□□□ 0.48
CCDC88B-208ENST00000492980 LYZL6O75951 148 aa18.07■□□□□ 0.48
CCDC88B-208ENST00000492980 NMBP08949 121 aa18.07■□□□□ 0.48
CCDC88B-208ENST00000492980 NOVA1P51513 510 aaKnown RBP18.07■□□□□ 0.48
CCDC88B-208ENST00000492980 UBE2NP61088 152 aaKnown RBP18.07■□□□□ 0.48
CCDC88B-208ENST00000492980 UBA52P62987 128 aaKnown RBP18.07■□□□□ 0.48
CCDC88B-208ENST00000492980 HAGHLQ6PII5 290 aaPredicted RBP18.07■□□□□ 0.48
CCDC88B-208ENST00000492980 RCC2Q9P258 522 aaKnown RBP18.07■□□□□ 0.48
CCDC88B-208ENST00000492980 DMXL1Q9Y485 3027 aa18.07■□□□□ 0.48
CCDC88B-208ENST00000492980 TRBV6-7A0A0A0MS04 114 aa18.07■□□□□ 0.48
CCDC88B-208ENST00000492980 KANTRA0A1W2PQU2 76 aa18.07■□□□□ 0.48
CCDC88B-208ENST00000492980 OR5B21A6NL26 309 aa18.07■□□□□ 0.48
CCDC88B-208ENST00000492980 PRSS44E7EML9 344 aa18.07■□□□□ 0.48
CCDC88B-208ENST00000492980 IL32P24001 234 aa18.07■□□□□ 0.48
CCDC88B-208ENST00000492980 GABRA6Q16445 453 aa18.07■□□□□ 0.48
CCDC88B-208ENST00000492980 BEX5Q5H9J7 111 aa18.07■□□□□ 0.48
CCDC88B-208ENST00000492980 Q6ZT83 130 aa18.07■□□□□ 0.48
CCDC88B-208ENST00000492980 SGPP2Q8IWX5 399 aa18.07■□□□□ 0.48
CCDC88B-208ENST00000492980 C9orf106Q8NAJ2 232 aa18.07■□□□□ 0.48
CCDC88B-208ENST00000492980 ST8SIA2Q92186 375 aa18.07■□□□□ 0.48
CCDC88B-208ENST00000492980 SARAFQ96BY9 339 aa18.07■□□□□ 0.48
CCDC88B-208ENST00000492980 OR10C1Q96KK4 312 aa18.07■□□□□ 0.48
CCDC88B-208ENST00000492980 RNF126Q9BV68 326 aa18.07■□□□□ 0.48
CCDC88B-208ENST00000492980 METTL8Q9H825 291 aaKnown RBP18.07■□□□□ 0.48
CCDC88B-208ENST00000492980 PLSCR2Q9NRY7 297 aa18.07■□□□□ 0.48
CCDC88B-208ENST00000492980 CNOT1A5YKK6 2376 aaKnown RBP18.06■□□□□ 0.48
CCDC88B-208ENST00000492980 J3QW42 95 aa18.06■□□□□ 0.48
CCDC88B-208ENST00000492980 TM4SF5O14894 197 aa18.06■□□□□ 0.48
CCDC88B-208ENST00000492980 RLN2P04090 185 aa18.06■□□□□ 0.48
CCDC88B-208ENST00000492980 ZNF728P0DKX0 622 aa18.06■□□□□ 0.48
CCDC88B-208ENST00000492980 GNG3P63215 75 aa18.06■□□□□ 0.48
CCDC88B-208ENST00000492980 MPV17LQ2QL34 196 aa18.06■□□□□ 0.48
CCDC88B-208ENST00000492980 CCDC36Q8IYA8 594 aa18.06■□□□□ 0.48
CCDC88B-208ENST00000492980 TOMM40LQ969M1 308 aa18.06■□□□□ 0.48
CCDC88B-208ENST00000492980 DLL3Q9NYJ7 618 aa18.06■□□□□ 0.48
CCDC88B-208ENST00000492980 H0YIZ8 118 aa18.05■□□□□ 0.48
CCDC88B-208ENST00000492980 SMPD2O60906 423 aa18.05■□□□□ 0.48
CCDC88B-208ENST00000492980 FCGR2CP31995 323 aa18.05■□□□□ 0.48
CCDC88B-208ENST00000492980 RBMXP38159 391 aaKnown RBP18.05■□□□□ 0.48
CCDC88B-208ENST00000492980 KIR2DL2P43627 348 aaPredicted RBP18.05■□□□□ 0.48
CCDC88B-208ENST00000492980 IDH3GP51553 393 aaPredicted RBP18.05■□□□□ 0.48
CCDC88B-208ENST00000492980 P2RX3P56373 397 aa18.05■□□□□ 0.48
CCDC88B-208ENST00000492980 PLEKHN1Q494U1 663 aaPredicted RBP18.05■□□□□ 0.48
CCDC88B-208ENST00000492980 TOR2AQ5JU69 321 aa18.05■□□□□ 0.48
CCDC88B-208ENST00000492980 FBXW12Q6X9E4 464 aa18.05■□□□□ 0.48
CCDC88B-208ENST00000492980 CNEP1R1Q8N9A8 125 aa18.05■□□□□ 0.48
CCDC88B-208ENST00000492980 POC1AQ8NBT0 407 aa18.05■□□□□ 0.48
CCDC88B-208ENST00000492980 INO80EQ8NBZ0 244 aaPredicted RBP18.05■□□□□ 0.48
CCDC88B-208ENST00000492980 C1orf123Q9NWV4 160 aa18.05■□□□□ 0.48
CCDC88B-208ENST00000492980 URB1O60287 2271 aaKnown RBP18.05■□□□□ 0.48
CCDC88B-208ENST00000492980 ZFHX4Q86UP3 3567 aa18.05■□□□□ 0.48
CCDC88B-208ENST00000492980 TPD52L2O43399 206 aaKnown RBP18.05■□□□□ 0.48
CCDC88B-208ENST00000492980 SPINK2P20155 84 aa18.05■□□□□ 0.48
CCDC88B-208ENST00000492980 CA6P23280 308 aa18.05■□□□□ 0.48
CCDC88B-208ENST00000492980 RTP5Q14D33 572 aa18.05■□□□□ 0.48
CCDC88B-208ENST00000492980 ZNF573Q86YE8 665 aa18.05■□□□□ 0.48
CCDC88B-208ENST00000492980 C2orf50Q96LR7 162 aa18.05■□□□□ 0.48
CCDC88B-208ENST00000492980 ZNF292O60281 2723 aa18.05■□□□□ 0.48
CCDC88B-208ENST00000492980 LOC400499M0QZD8 3231 aa18.04■□□□□ 0.48
CCDC88B-208ENST00000492980 TEX13DA0A0J9YY54 714 aaPredicted RBP18.04■□□□□ 0.48
CCDC88B-208ENST00000492980 CNOT4O95628 575 aaKnown RBP18.04■□□□□ 0.48
CCDC88B-208ENST00000492980 HOXB5P09067 269 aa18.04■□□□□ 0.48
CCDC88B-208ENST00000492980 PIGPP57054 158 aa18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms