RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 ANGPTL6Q8NI99 470 aa6.9□□□□□ -1.3
SF3A1-208ENST00000485618 RAB40AQ8WXH6 277 aa6.9□□□□□ -1.3
SF3A1-208ENST00000485618 ST8SIA4Q92187 359 aa6.9□□□□□ -1.3
SF3A1-208ENST00000485618 MUL1Q969V5 352 aa6.9□□□□□ -1.3
SF3A1-208ENST00000485618 MSI2Q96DH6 328 aaKnown RBP6.9□□□□□ -1.3
SF3A1-208ENST00000485618 SPACA5Q96QH8 159 aa6.9□□□□□ -1.3
SF3A1-208ENST00000485618 CCL13Q99616 98 aa6.9□□□□□ -1.3
SF3A1-208ENST00000485618 FGF23Q9GZV9 251 aaPredicted RBP6.9□□□□□ -1.3
SF3A1-208ENST00000485618 WDR13Q9H1Z4 485 aa6.9□□□□□ -1.3
SF3A1-208ENST00000485618 PLGRKTQ9HBL7 147 aa6.9□□□□□ -1.3
SF3A1-208ENST00000485618 HES4Q9HCC6 221 aa6.9□□□□□ -1.3
SF3A1-208ENST00000485618 HMG20AQ9NP66 347 aa6.9□□□□□ -1.3
SF3A1-208ENST00000485618 HIF1ANQ9NWT6 349 aa6.9□□□□□ -1.3
SF3A1-208ENST00000485618 TMEM160Q9NX00 188 aa6.9□□□□□ -1.3
SF3A1-208ENST00000485618 DCAF16Q9NXF7 216 aa6.9□□□□□ -1.3
SF3A1-208ENST00000485618 SLC25A10Q9UBX3 287 aaPredicted RBP6.9□□□□□ -1.3
SF3A1-208ENST00000485618 OR14J1Q9UGF5 321 aa6.9□□□□□ -1.3
SF3A1-208ENST00000485618 CDC42EP3Q9UKI2 254 aa6.9□□□□□ -1.3
SF3A1-208ENST00000485618 MRPS28Q9Y2Q9 187 aaKnown RBP6.9□□□□□ -1.3
SF3A1-208ENST00000485618 POLR3KQ9Y2Y1 108 aaPredicted RBP6.9□□□□□ -1.3
SF3A1-208ENST00000485618 SF3B6Q9Y3B4 125 aaKnown RBP6.9□□□□□ -1.3
SF3A1-208ENST00000485618 MALRD1Q5VYJ5 2156 aa6.89□□□□□ -1.31
SF3A1-208ENST00000485618 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6.89□□□□□ -1.311e-8■■□□□ 13.3
SF3A1-208ENST00000485618 TRAV8-7A0A075B6U6 113 aa6.89□□□□□ -1.31
SF3A1-208ENST00000485618 KIR2DS1A0A191URI9 304 aa6.89□□□□□ -1.31
SF3A1-208ENST00000485618 A8MXK9 166 aa6.89□□□□□ -1.31
SF3A1-208ENST00000485618 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP6.89□□□□□ -1.31
SF3A1-208ENST00000485618 DVL1O14640 695 aa6.89□□□□□ -1.31
SF3A1-208ENST00000485618 PIN1P1O15428 100 aa6.89□□□□□ -1.31
SF3A1-208ENST00000485618 SPRY1O43609 319 aaPredicted RBP6.89□□□□□ -1.31
SF3A1-208ENST00000485618 ANGPTL7O43827 346 aa6.89□□□□□ -1.31
SF3A1-208ENST00000485618 AIREO43918 545 aa6.89□□□□□ -1.31
SF3A1-208ENST00000485618 HTR3BO95264 441 aa6.89□□□□□ -1.31
SF3A1-208ENST00000485618 HAND1O96004 215 aa6.89□□□□□ -1.31
SF3A1-208ENST00000485618 EGR1P18146 543 aa6.89□□□□□ -1.31
SF3A1-208ENST00000485618 BCL3P20749 454 aa6.89□□□□□ -1.31
SF3A1-208ENST00000485618 GABRR1P24046 479 aa6.89□□□□□ -1.31
SF3A1-208ENST00000485618 HTR2CP28335 458 aa6.89□□□□□ -1.31
SF3A1-208ENST00000485618 KCNJ3P48549 501 aa6.89□□□□□ -1.31
SF3A1-208ENST00000485618 KRTAP1-1Q07627 177 aa6.89□□□□□ -1.31
SF3A1-208ENST00000485618 SCN1BQ07699 218 aa6.89□□□□□ -1.31
SF3A1-208ENST00000485618 IL13RA2Q14627 380 aa6.89□□□□□ -1.31
SF3A1-208ENST00000485618 RAB11BQ15907 218 aa6.89□□□□□ -1.31
SF3A1-208ENST00000485618 SSX1Q16384 188 aa6.89□□□□□ -1.31
SF3A1-208ENST00000485618 DGUOKQ16854 277 aa6.89□□□□□ -1.31
SF3A1-208ENST00000485618 MPV17LQ2QL34 196 aa6.89□□□□□ -1.31
SF3A1-208ENST00000485618 SLC22A6Q4U2R8 563 aa6.89□□□□□ -1.31
SF3A1-208ENST00000485618 C22orf42Q6IC83 251 aa6.89□□□□□ -1.31
SF3A1-208ENST00000485618 FAHD2BQ6P2I3 314 aaPredicted RBP6.89□□□□□ -1.31
SF3A1-208ENST00000485618 GLIPR1L1Q6UWM5 242 aa6.89□□□□□ -1.31
SF3A1-208ENST00000485618 TMEM91Q6ZNR0 172 aa6.89□□□□□ -1.31
SF3A1-208ENST00000485618 GDPD3Q7L5L3 318 aa6.89□□□□□ -1.31
SF3A1-208ENST00000485618 CROCCP3Q8IVE0 287 aa6.89□□□□□ -1.31
SF3A1-208ENST00000485618 OSR2Q8N2R0 312 aa6.89□□□□□ -1.31
SF3A1-208ENST00000485618 ASCC1Q8N9N2 400 aaKnown RBP6.89□□□□□ -1.31
SF3A1-208ENST00000485618 C19orf18Q8NEA5 215 aa6.89□□□□□ -1.31
SF3A1-208ENST00000485618 TMEM185AQ8NFB2 350 aa6.89□□□□□ -1.31
SF3A1-208ENST00000485618 KCNG3Q8TAE7 436 aa6.89□□□□□ -1.31
SF3A1-208ENST00000485618 FAHD2AQ96GK7 314 aa6.89□□□□□ -1.31
SF3A1-208ENST00000485618 SNX22Q96L94 193 aa6.89□□□□□ -1.31
SF3A1-208ENST00000485618 ZNF488Q96MN9 340 aa6.89□□□□□ -1.31
SF3A1-208ENST00000485618 URM1Q9BTM9 101 aaKnown RBP6.89□□□□□ -1.31
SF3A1-208ENST00000485618 BEX2Q9BXY8 128 aa6.89□□□□□ -1.31
SF3A1-208ENST00000485618 BARHL1Q9BZE3 327 aa6.89□□□□□ -1.31
SF3A1-208ENST00000485618 C7orf69Q9H7B7 122 aa6.89□□□□□ -1.31
SF3A1-208ENST00000485618 CNTD2Q9H8S5 307 aa6.89□□□□□ -1.31
SF3A1-208ENST00000485618 LPAR2Q9HBW0 351 aa6.89□□□□□ -1.31
SF3A1-208ENST00000485618 RBFOX1Q9NWB1 397 aaKnown RBP6.89□□□□□ -1.31
SF3A1-208ENST00000485618 SCOCQ9UIL1 159 aa6.89□□□□□ -1.31
SF3A1-208ENST00000485618 V9GY05 133 aa6.89□□□□□ -1.31
SF3A1-208ENST00000485618 DOCK11Q5JSL3 2073 aa6.89□□□□□ -1.31
SF3A1-208ENST00000485618 JMJD1CQ15652 2540 aa6.89□□□□□ -1.31
SF3A1-208ENST00000485618 FBN1P35555 2871 aaKnown RBP6.89□□□□□ -1.31
SF3A1-208ENST00000485618 WNK2Q9Y3S1 2297 aa6.88□□□□□ -1.31
SF3A1-208ENST00000485618 IGKV1D-17A0A075B6S4 117 aa6.88□□□□□ -1.31
SF3A1-208ENST00000485618 LOC100506127A0A0U1RQW1 187 aa6.88□□□□□ -1.31
SF3A1-208ENST00000485618 A0A1W2PQ09 198 aa6.88□□□□□ -1.31
SF3A1-208ENST00000485618 FAM90A10PA6NDY2 464 aa6.88□□□□□ -1.31
SF3A1-208ENST00000485618 FAM90A18PA6NE21 464 aa6.88□□□□□ -1.31
SF3A1-208ENST00000485618 FAM90A16PA6NEW6 464 aa6.88□□□□□ -1.31
SF3A1-208ENST00000485618 FAM90A20PA6NIJ5 464 aa6.88□□□□□ -1.31
SF3A1-208ENST00000485618 FAM90A8PA6NJQ4 464 aa6.88□□□□□ -1.31
SF3A1-208ENST00000485618 FAM90A7PA6NKC0 464 aa6.88□□□□□ -1.31
SF3A1-208ENST00000485618 TRIM64CA6NLI5 447 aa6.88□□□□□ -1.31
SF3A1-208ENST00000485618 FAM90A22PA8MWA6 464 aa6.88□□□□□ -1.31
SF3A1-208ENST00000485618 FAM90A12PA8MX19 464 aa6.88□□□□□ -1.31
SF3A1-208ENST00000485618 FAM90A5PA8MXJ8 464 aa6.88□□□□□ -1.31
SF3A1-208ENST00000485618 FAM90A23PA8MXZ1 464 aa6.88□□□□□ -1.31
SF3A1-208ENST00000485618 FAM157AC9JC47 383 aa6.88□□□□□ -1.31
SF3A1-208ENST00000485618 K7N7A8 449 aa6.88□□□□□ -1.31
SF3A1-208ENST00000485618 TNFRSF13BO14836 293 aaPredicted RBP6.88□□□□□ -1.31
SF3A1-208ENST00000485618 MGST3O14880 152 aa6.88□□□□□ -1.31
SF3A1-208ENST00000485618 PHF1O43189 567 aaPredicted RBP6.88□□□□□ -1.31
SF3A1-208ENST00000485618 NOL3O60936 208 aaKnown RBP6.88□□□□□ -1.31
SF3A1-208ENST00000485618 CRTAPO75718 401 aaPredicted RBP6.88□□□□□ -1.31
SF3A1-208ENST00000485618 IFNA2P01563 188 aa6.88□□□□□ -1.31
SF3A1-208ENST00000485618 TK1P04183 234 aa6.88□□□□□ -1.31
SF3A1-208ENST00000485618 FAM90A15PP0C7V4 464 aa6.88□□□□□ -1.31
SF3A1-208ENST00000485618 FAM90A13PP0C7W8 464 aa6.88□□□□□ -1.31
SF3A1-208ENST00000485618 FAM90A14PP0C7W9 464 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms