RNA–Protein interactions for RNA: ENST00000478423.6

NPHP4-208, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 4,467 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-208ENST00000478423 NKX2-8O15522 239 aa12.48□□□□□ -0.41
NPHP4-208ENST00000478423 HPXP02790 462 aa12.48□□□□□ -0.41
NPHP4-208ENST00000478423 CXCL3P19876 107 aa12.48□□□□□ -0.41
NPHP4-208ENST00000478423 RAB32Q13637 225 aa12.48□□□□□ -0.41
NPHP4-208ENST00000478423 KCNIP4Q6PIL6 250 aa12.48□□□□□ -0.41
NPHP4-208ENST00000478423 SLC7A10Q9NS82 523 aa12.48□□□□□ -0.41
NPHP4-208ENST00000478423 RCL1Q9Y2P8 373 aaKnown RBP12.48□□□□□ -0.41
NPHP4-208ENST00000478423 DIDO1Q9BTC0 2240 aaKnown RBP12.48□□□□□ -0.41
NPHP4-208ENST00000478423 PCNX1Q96RV3 2341 aa12.48□□□□□ -0.41
NPHP4-208ENST00000478423 SCAF4O95104 1147 aaKnown RBP12.48□□□□□ -0.41
NPHP4-208ENST00000478423 P2RX3P56373 397 aa12.48□□□□□ -0.41
NPHP4-208ENST00000478423 POC1BQ8TC44 478 aa12.48□□□□□ -0.41
NPHP4-208ENST00000478423 AKIRIN1Q9H9L7 192 aaPredicted RBP12.48□□□□□ -0.41
NPHP4-208ENST00000478423 KPTNQ9Y664 436 aa12.48□□□□□ -0.41
NPHP4-208ENST00000478423 URGCP-MRPS24S4R325 110 aa12.48□□□□□ -0.41
NPHP4-208ENST00000478423 NDUFB3O43676 98 aa12.48□□□□□ -0.41
NPHP4-208ENST00000478423 SULT1A3P0DMM9 295 aa12.48□□□□□ -0.41
NPHP4-208ENST00000478423 SULT1A4P0DMN0 295 aa12.48□□□□□ -0.41
NPHP4-208ENST00000478423 RPS4XP62701 263 aaKnown RBP12.48□□□□□ -0.41
NPHP4-208ENST00000478423 IL34Q6ZMJ4 242 aa12.48□□□□□ -0.41
NPHP4-208ENST00000478423 KCNK17Q96T54 332 aa12.48□□□□□ -0.41
NPHP4-208ENST00000478423 PCDHGA9Q9Y5G4 932 aaKnown RBP12.48□□□□□ -0.41
NPHP4-208ENST00000478423 IGLV1-36A0A0B4J1U3 117 aa12.47□□□□□ -0.41
NPHP4-208ENST00000478423 ZNF205O95201 554 aa12.47□□□□□ -0.41
NPHP4-208ENST00000478423 ZIC2O95409 532 aaPredicted RBP12.47□□□□□ -0.41
NPHP4-208ENST00000478423 PNPP00491 289 aa12.47□□□□□ -0.41
NPHP4-208ENST00000478423 OR3A1P47881 315 aa12.47□□□□□ -0.41
NPHP4-208ENST00000478423 GNB1P62873 340 aa12.47□□□□□ -0.41
NPHP4-208ENST00000478423 SLC23A3Q6PIS1 610 aa12.47□□□□□ -0.41
NPHP4-208ENST00000478423 PINX1Q96BK5 328 aaKnown RBP12.47□□□□□ -0.41
NPHP4-208ENST00000478423 SMCO4Q9NRQ5 59 aa12.47□□□□□ -0.41
NPHP4-208ENST00000478423 F6UZH7 168 aa12.47□□□□□ -0.41
NPHP4-208ENST00000478423 MPC2O95563 127 aa12.47□□□□□ -0.41
NPHP4-208ENST00000478423 CBR1P16152 277 aa12.47□□□□□ -0.41
NPHP4-208ENST00000478423 TNFAIP6P98066 277 aaPredicted RBP12.47□□□□□ -0.41
NPHP4-208ENST00000478423 ADAM5Q6NVV9 412 aa12.47□□□□□ -0.41
NPHP4-208ENST00000478423 RPUSD3Q6P087 351 aaKnown RBP12.47□□□□□ -0.41
NPHP4-208ENST00000478423 CA5BP1Q8WTZ4 195 aa12.47□□□□□ -0.41
NPHP4-208ENST00000478423 IL17BQ9UHF5 180 aa12.47□□□□□ -0.41
NPHP4-208ENST00000478423 PSG11Q9UQ72 335 aa12.47□□□□□ -0.41
NPHP4-208ENST00000478423 GPR37O15354 613 aa12.47□□□□□ -0.41
NPHP4-208ENST00000478423 OR5AC1P0C628 307 aa12.47□□□□□ -0.41
NPHP4-208ENST00000478423 ROM1Q03395 351 aa12.47□□□□□ -0.41
NPHP4-208ENST00000478423 C9orf152Q5JTZ5 239 aa12.47□□□□□ -0.41
NPHP4-208ENST00000478423 ADGRG7Q96K78 797 aa12.47□□□□□ -0.41
NPHP4-208ENST00000478423 TAAR6Q96RI8 345 aa12.47□□□□□ -0.41
NPHP4-208ENST00000478423 DDA1Q9BW61 102 aa12.47□□□□□ -0.41
NPHP4-208ENST00000478423 RASL12Q9NYN1 266 aa12.47□□□□□ -0.41
NPHP4-208ENST00000478423 PKDREJQ9NTG1 2253 aa12.47□□□□□ -0.41
NPHP4-208ENST00000478423 MS4A18H0YCH9 400 aa12.47□□□□□ -0.41
NPHP4-208ENST00000478423 TGFBR3LH3BV60 316 aa12.47□□□□□ -0.41
NPHP4-208ENST00000478423 AQP7O14520 342 aa12.47□□□□□ -0.41
NPHP4-208ENST00000478423 YIF1AO95070 293 aa12.47□□□□□ -0.41
NPHP4-208ENST00000478423 PMP22Q01453 160 aa12.47□□□□□ -0.41
NPHP4-208ENST00000478423 MS4A18Q3C1V0 323 aa12.47□□□□□ -0.41
NPHP4-208ENST00000478423 LRRC10Q5BKY1 277 aa12.47□□□□□ -0.41
NPHP4-208ENST00000478423 PGLYRP3Q96LB9 341 aa12.47□□□□□ -0.41
NPHP4-208ENST00000478423 SLC26A1Q9H2B4 701 aa12.47□□□□□ -0.41
NPHP4-208ENST00000478423 NAA60Q9H7X0 242 aa12.47□□□□□ -0.41
NPHP4-208ENST00000478423 MED9Q9NWA0 146 aa12.47□□□□□ -0.41
NPHP4-208ENST00000478423 CYB5R1Q9UHQ9 305 aa12.47□□□□□ -0.41
NPHP4-208ENST00000478423 MDFIC2A0A1B0GVS7 189 aa12.46□□□□□ -0.41
NPHP4-208ENST00000478423 LNP1A1A4G5 178 aa12.46□□□□□ -0.41
NPHP4-208ENST00000478423 THY1P04216 161 aa12.46□□□□□ -0.41
NPHP4-208ENST00000478423 THBS3P49746 956 aa12.46□□□□□ -0.41
NPHP4-208ENST00000478423 ERHP84090 104 aaKnown RBP12.46□□□□□ -0.41
NPHP4-208ENST00000478423 COL19A1Q14993 1142 aa12.46□□□□□ -0.41
NPHP4-208ENST00000478423 PCOLCEQ15113 449 aa12.46□□□□□ -0.41
NPHP4-208ENST00000478423 GGNBP1Q5YKI7 109 aa12.46□□□□□ -0.41
NPHP4-208ENST00000478423 APCDD1LQ8NCL9 501 aa12.46□□□□□ -0.41
NPHP4-208ENST00000478423 MRGPRDQ8TDS7 321 aa12.46□□□□□ -0.41
NPHP4-208ENST00000478423 DOCK4Q8N1I0 1966 aa12.46□□□□□ -0.41
NPHP4-208ENST00000478423 TXNL1O43396 289 aa12.46□□□□□ -0.41
NPHP4-208ENST00000478423 IGHV3-13P01766 116 aa12.46□□□□□ -0.41
NPHP4-208ENST00000478423 IGHV3-7P01780 117 aa12.46□□□□□ -0.41
NPHP4-208ENST00000478423 MT-ND4LP03901 98 aa12.46□□□□□ -0.41
NPHP4-208ENST00000478423 LYG1Q8N1E2 194 aa12.46□□□□□ -0.41
NPHP4-208ENST00000478423 IGHV3-43A0A0B4J1X8 118 aa12.46□□□□□ -0.42
NPHP4-208ENST00000478423 AGFG2O95081 481 aa12.46□□□□□ -0.42
NPHP4-208ENST00000478423 ONECUT2O95948 504 aa12.46□□□□□ -0.42
NPHP4-208ENST00000478423 IGHV3-43DP0DP04 118 aa12.46□□□□□ -0.42
NPHP4-208ENST00000478423 ASCL1P50553 236 aa12.46□□□□□ -0.42
NPHP4-208ENST00000478423 HLXQ14774 488 aaPredicted RBP12.46□□□□□ -0.42
NPHP4-208ENST00000478423 CD200R1LQ6Q8B3 271 aa12.46□□□□□ -0.42
NPHP4-208ENST00000478423 ZFP82Q8N141 532 aa12.46□□□□□ -0.42
NPHP4-208ENST00000478423 ZNF485Q8NCK3 441 aa12.46□□□□□ -0.42
NPHP4-208ENST00000478423 NXF2Q9GZY0 626 aaKnown RBP12.46□□□□□ -0.42
NPHP4-208ENST00000478423 GPR27Q9NS67 375 aa12.46□□□□□ -0.42
NPHP4-208ENST00000478423 MRPL22Q9NWU5 206 aaKnown RBP12.46□□□□□ -0.42
NPHP4-208ENST00000478423 NYNRINQ9P2P1 1898 aaKnown RBP12.46□□□□□ -0.42
NPHP4-208ENST00000478423 ARPC4-TTLL3A0A0A6YYG9 625 aa12.45□□□□□ -0.42
NPHP4-208ENST00000478423 PGA3P0DJD8 388 aa12.45□□□□□ -0.42
NPHP4-208ENST00000478423 COX6A1P12074 109 aa12.45□□□□□ -0.42
NPHP4-208ENST00000478423 EGR4Q05215 589 aa12.45□□□□□ -0.42
NPHP4-208ENST00000478423 KLF9Q13886 244 aaPredicted RBP12.45□□□□□ -0.42
NPHP4-208ENST00000478423 MPPED2Q15777 294 aa12.45□□□□□ -0.42
NPHP4-208ENST00000478423 C19orf12Q9NSK7 152 aa12.45□□□□□ -0.42
NPHP4-208ENST00000478423 MTCL1Q9Y4B5 1905 aaKnown RBP12.45□□□□□ -0.42
NPHP4-208ENST00000478423 C3orf85A0A1B0GTC6 90 aa12.45□□□□□ -0.42
NPHP4-208ENST00000478423 ADAM20O43506 726 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms