RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 PITX3O75364 302 aa11.91□□□□□ -0.5
COL6A3-209ENST00000472056 HLA-DQA1P01909 254 aa11.91□□□□□ -0.5
COL6A3-209ENST00000472056 MAMSTRQ6ZN01 415 aa11.91□□□□□ -0.5
COL6A3-209ENST00000472056 SLC25A26Q70HW3 274 aa11.91□□□□□ -0.5
COL6A3-209ENST00000472056 MARCH3Q86UD3 253 aa11.91□□□□□ -0.5
COL6A3-209ENST00000472056 TTC9BQ8N6N2 239 aa11.91□□□□□ -0.5
COL6A3-209ENST00000472056 SCCPDHQ8NBX0 429 aa11.91□□□□□ -0.5
COL6A3-209ENST00000472056 GAL3ST2Q9H3Q3 398 aa11.91□□□□□ -0.5
COL6A3-209ENST00000472056 TMEFF2Q9UIK5 374 aaPredicted RBP11.91□□□□□ -0.5
COL6A3-209ENST00000472056 SSX1Q16384 188 aa11.91□□□□□ -0.5
COL6A3-209ENST00000472056 OR10G4Q8NGN3 311 aa11.91□□□□□ -0.5
COL6A3-209ENST00000472056 OR10G9Q8NGN4 311 aa11.91□□□□□ -0.5
COL6A3-209ENST00000472056 OR10G7Q8NGN6 311 aa11.91□□□□□ -0.5
COL6A3-209ENST00000472056 MYOZ3Q8TDC0 251 aa11.91□□□□□ -0.5
COL6A3-209ENST00000472056 FGF13Q92913 245 aa11.91□□□□□ -0.5
COL6A3-209ENST00000472056 WDR34Q96EX3 536 aa11.91□□□□□ -0.5
COL6A3-209ENST00000472056 EFSO43281 561 aa11.91□□□□□ -0.5
COL6A3-209ENST00000472056 KISS1Q15726 138 aa11.91□□□□□ -0.5
COL6A3-209ENST00000472056 TEX30Q5JUR7 227 aa11.91□□□□□ -0.5
COL6A3-209ENST00000472056 TMEM207Q6UWW9 146 aa11.91□□□□□ -0.5
COL6A3-209ENST00000472056 TUSC5Q8IXB3 177 aa11.91□□□□□ -0.5
COL6A3-209ENST00000472056 P2RX4Q99571 388 aa11.91□□□□□ -0.5
COL6A3-209ENST00000472056 LRP12Q9Y561 859 aa11.91□□□□□ -0.5
COL6A3-209ENST00000472056 A0A0B4J2E0 115 aa11.91□□□□□ -0.5
COL6A3-209ENST00000472056 TMEM272A0A1B0GTI8 110 aa11.91□□□□□ -0.5
COL6A3-209ENST00000472056 A0A1B0GX12 115 aa11.91□□□□□ -0.5
COL6A3-209ENST00000472056 CRYAAP02489 173 aa11.91□□□□□ -0.5
COL6A3-209ENST00000472056 ZNF385DQ9H6B1 395 aa11.91□□□□□ -0.5
COL6A3-209ENST00000472056 ZADH2Q8N4Q0 377 aa11.91□□□□□ -0.5
COL6A3-209ENST00000472056 PDCD6O75340 191 aa11.91□□□□□ -0.5
COL6A3-209ENST00000472056 CST7O76096 145 aa11.91□□□□□ -0.5
COL6A3-209ENST00000472056 TMEM40Q8WWA1 233 aa11.91□□□□□ -0.5
COL6A3-209ENST00000472056 SLCO1C1Q9NYB5 712 aa11.91□□□□□ -0.5
COL6A3-209ENST00000472056 SIGLEC7Q9Y286 467 aa11.91□□□□□ -0.5
COL6A3-209ENST00000472056 MFSD2BA6NFX1 497 aa11.91□□□□□ -0.5
COL6A3-209ENST00000472056 LMX1BO60663 402 aa11.91□□□□□ -0.5
COL6A3-209ENST00000472056 SMPD2O60906 423 aa11.91□□□□□ -0.5
COL6A3-209ENST00000472056 PLP1P60201 277 aa11.91□□□□□ -0.5
COL6A3-209ENST00000472056 MIEN1Q9BRT3 115 aa11.91□□□□□ -0.5
COL6A3-209ENST00000472056 ARHGAP32A7KAX9 2087 aa11.91□□□□□ -0.5
COL6A3-209ENST00000472056 CRXO43186 299 aaPredicted RBP11.9□□□□□ -0.5
COL6A3-209ENST00000472056 PRSS23O95084 383 aa11.9□□□□□ -0.5
COL6A3-209ENST00000472056 CDKN2AP42771 156 aaKnown RBP11.9□□□□□ -0.5
COL6A3-209ENST00000472056 RPL30P62888 115 aaKnown RBP11.9□□□□□ -0.5
COL6A3-209ENST00000472056 DOK4Q8TEW6 326 aa11.9□□□□□ -0.5
COL6A3-209ENST00000472056 DUSP13Q9UII6 198 aa11.9□□□□□ -0.5
COL6A3-209ENST00000472056 RHBDL1O75783 438 aa11.9□□□□□ -0.5
COL6A3-209ENST00000472056 SLC25A5P05141 298 aaKnown RBP11.9□□□□□ -0.5
COL6A3-209ENST00000472056 ZNF865P0CJ78 1059 aaPredicted RBP11.9□□□□□ -0.5
COL6A3-209ENST00000472056 DLX1P56177 255 aa11.9□□□□□ -0.5
COL6A3-209ENST00000472056 DSCR4P56555 118 aaPredicted RBP11.9□□□□□ -0.5
COL6A3-209ENST00000472056 CLDN2P57739 230 aa11.9□□□□□ -0.5
COL6A3-209ENST00000472056 RELBQ01201 579 aa11.9□□□□□ -0.5
COL6A3-209ENST00000472056 SLC25A35Q3KQZ1 300 aa11.9□□□□□ -0.5
COL6A3-209ENST00000472056 VHLLQ6RSH7 139 aa11.9□□□□□ -0.5
COL6A3-209ENST00000472056 SPANXA1Q9NS26 97 aa11.9□□□□□ -0.5
COL6A3-209ENST00000472056 LANCL2Q9NS86 450 aa11.9□□□□□ -0.5
COL6A3-209ENST00000472056 CACNA1GO43497 2377 aa11.9□□□□□ -0.5
COL6A3-209ENST00000472056 ADAM20O43506 726 aa11.9□□□□□ -0.5
COL6A3-209ENST00000472056 P01737 135 aa11.9□□□□□ -0.5
COL6A3-209ENST00000472056 CD1AP06126 327 aa11.9□□□□□ -0.5
COL6A3-209ENST00000472056 PWWP2BQ6NUJ5 590 aa11.9□□□□□ -0.5
COL6A3-209ENST00000472056 RHBDD1Q8TEB9 315 aa11.9□□□□□ -0.5
COL6A3-209ENST00000472056 OR2V2Q96R30 315 aa11.9□□□□□ -0.5
COL6A3-209ENST00000472056 A0A0A6YYD5 115 aa11.9□□□□□ -0.5
COL6A3-209ENST00000472056 SPNP16150 400 aa11.9□□□□□ -0.5
COL6A3-209ENST00000472056 PDFQ9HBH1 243 aa11.9□□□□□ -0.5
COL6A3-209ENST00000472056 ZNF253O75346 499 aa11.9□□□□□ -0.5
COL6A3-209ENST00000472056 CEBPBP17676 345 aa11.9□□□□□ -0.5
COL6A3-209ENST00000472056 DEFB119Q8N690 84 aa11.9□□□□□ -0.5
COL6A3-209ENST00000472056 LILRB1Q8NHL6 650 aaPredicted RBP11.9□□□□□ -0.5
COL6A3-209ENST00000472056 FAM131CQ96AQ9 280 aa11.9□□□□□ -0.5
COL6A3-209ENST00000472056 GPX7Q96SL4 187 aaPredicted RBP11.9□□□□□ -0.5
COL6A3-209ENST00000472056 SLC46A2Q9BY10 475 aa11.9□□□□□ -0.5
COL6A3-209ENST00000472056 ZFPL1O95159 310 aa11.9□□□□□ -0.5
COL6A3-209ENST00000472056 ACAA1P09110 424 aaPredicted RBP11.9□□□□□ -0.5
COL6A3-209ENST00000472056 COL19A1Q14993 1142 aa11.9□□□□□ -0.5
COL6A3-209ENST00000472056 JOSD1Q15040 202 aaPredicted RBP11.9□□□□□ -0.5
COL6A3-209ENST00000472056 DEFB133Q30KQ1 61 aa11.9□□□□□ -0.5
COL6A3-209ENST00000472056 OR2B11Q5JQS5 317 aa11.9□□□□□ -0.5
COL6A3-209ENST00000472056 TMEM215Q68D42 235 aa11.9□□□□□ -0.5
COL6A3-209ENST00000472056 ARL6IP6Q8N6S5 226 aa11.9□□□□□ -0.5
COL6A3-209ENST00000472056 ROBO4Q8WZ75 1007 aa11.9□□□□□ -0.5
COL6A3-209ENST00000472056 POM121Q96HA1 1249 aa11.9□□□□□ -0.5
COL6A3-209ENST00000472056 C1QTNF6Q9BXI9 259 aa11.9□□□□□ -0.5
COL6A3-209ENST00000472056 METTL1Q9UBP6 276 aaKnown RBP11.9□□□□□ -0.5
COL6A3-209ENST00000472056 WASHC3Q9Y3C0 194 aa11.9□□□□□ -0.5
COL6A3-209ENST00000472056 MYADML2A6NDP7 307 aa11.9□□□□□ -0.51
COL6A3-209ENST00000472056 M0R3E3 92 aa11.9□□□□□ -0.51
COL6A3-209ENST00000472056 CLEC12BQ2HXU8 276 aa11.9□□□□□ -0.51
COL6A3-209ENST00000472056 NEU3Q9UQ49 428 aa11.9□□□□□ -0.51
COL6A3-209ENST00000472056 CTXND1A0A1B0GTU2 59 aa11.89□□□□□ -0.51
COL6A3-209ENST00000472056 APCSP02743 223 aa11.89□□□□□ -0.51
COL6A3-209ENST00000472056 SARAFQ96BY9 339 aa11.89□□□□□ -0.51
COL6A3-209ENST00000472056 SLC7A10Q9NS82 523 aa11.89□□□□□ -0.51
COL6A3-209ENST00000472056 ADAMTSL3P82987 1691 aa11.89□□□□□ -0.51
COL6A3-209ENST00000472056 GAGE10A6NGK3 116 aa11.89□□□□□ -0.51
COL6A3-209ENST00000472056 DGAT2L7PQ6IED9 249 aa11.89□□□□□ -0.51
COL6A3-209ENST00000472056 OR5AS1Q8N127 324 aa11.89□□□□□ -0.51
COL6A3-209ENST00000472056 TMEM116Q8NCL8 245 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms