RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 MAIP1Q8WWC4 291 aa3.44□□□□□ -1.86
HMGB1-207ENST00000468384 HAUS1Q96CS2 278 aa3.44□□□□□ -1.86
HMGB1-207ENST00000468384 OR2M2Q96R28 347 aa3.44□□□□□ -1.86
HMGB1-207ENST00000468384 SH3GL3Q99963 347 aa3.44□□□□□ -1.86
HMGB1-207ENST00000468384 NICN1Q9BSH3 213 aa3.44□□□□□ -1.86
HMGB1-207ENST00000468384 SDR39U1Q9NRG7 319 aaPredicted RBP3.44□□□□□ -1.86
HMGB1-207ENST00000468384 FARSBQ9NSD9 589 aaKnown RBP3.44□□□□□ -1.86
HMGB1-207ENST00000468384 UFSP2Q9NUQ7 469 aa3.44□□□□□ -1.86
HMGB1-207ENST00000468384 SLC7A7Q9UM01 511 aa3.44□□□□□ -1.86
HMGB1-207ENST00000468384 MOB4Q9Y3A3 225 aa3.44□□□□□ -1.86
HMGB1-207ENST00000468384 HSPE1-MOB4S4R3N1 261 aa3.44□□□□□ -1.86
HMGB1-207ENST00000468384 IGHV3OR15-7A0A075B7D8 119 aa3.43□□□□□ -1.86
HMGB1-207ENST00000468384 C5orf49A4QMS7 147 aa3.43□□□□□ -1.86
HMGB1-207ENST00000468384 H0Y8G0 127 aa3.43□□□□□ -1.86
HMGB1-207ENST00000468384 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP3.43□□□□□ -1.86
HMGB1-207ENST00000468384 SOCS2O14508 198 aa3.43□□□□□ -1.86
HMGB1-207ENST00000468384 DNALI1O14645 258 aaPredicted RBP3.43□□□□□ -1.86
HMGB1-207ENST00000468384 POLR3GO15318 223 aaPredicted RBP3.43□□□□□ -1.86
HMGB1-207ENST00000468384 MLNRO43193 412 aa3.43□□□□□ -1.86
HMGB1-207ENST00000468384 EIF4E2O60573 245 aaKnown RBP3.43□□□□□ -1.86
HMGB1-207ENST00000468384 CST8O60676 142 aa3.43□□□□□ -1.86
HMGB1-207ENST00000468384 KCNK2O95069 426 aa3.43□□□□□ -1.86
HMGB1-207ENST00000468384 VAPBO95292 243 aa3.43□□□□□ -1.86
HMGB1-207ENST00000468384 TOMM40O96008 361 aa3.43□□□□□ -1.86
HMGB1-207ENST00000468384 ANXA8P13928 327 aa3.43□□□□□ -1.86
HMGB1-207ENST00000468384 RPA2P15927 270 aa3.43□□□□□ -1.86
HMGB1-207ENST00000468384 IGFBP3P17936 291 aaPredicted RBP3.43□□□□□ -1.86
HMGB1-207ENST00000468384 TSPAN8P19075 237 aa3.43□□□□□ -1.86
HMGB1-207ENST00000468384 OGNP20774 298 aaKnown RBP3.43□□□□□ -1.86
HMGB1-207ENST00000468384 FUT3P21217 361 aa3.43□□□□□ -1.86
HMGB1-207ENST00000468384 GSTM3P21266 225 aa3.43□□□□□ -1.86
HMGB1-207ENST00000468384 ATP6V1C1P21283 382 aa3.43□□□□□ -1.86
HMGB1-207ENST00000468384 RPS4Y1P22090 263 aaKnown RBP3.43□□□□□ -1.86
HMGB1-207ENST00000468384 CMA1P23946 247 aa3.43□□□□□ -1.86
HMGB1-207ENST00000468384 STOMP27105 288 aa3.43□□□□□ -1.86
HMGB1-207ENST00000468384 EPHA2P29317 976 aa3.43□□□□□ -1.86
HMGB1-207ENST00000468384 CCT3P49368 545 aaKnown RBP3.43□□□□□ -1.86
HMGB1-207ENST00000468384 ERFP50548 548 aa3.43□□□□□ -1.86
HMGB1-207ENST00000468384 SLC25A1P53007 311 aa3.43□□□□□ -1.86
HMGB1-207ENST00000468384 ACTR3P61158 418 aa3.43□□□□□ -1.86
HMGB1-207ENST00000468384 OR7A5Q15622 319 aa3.43□□□□□ -1.86
HMGB1-207ENST00000468384 MPPED2Q15777 294 aa3.43□□□□□ -1.86
HMGB1-207ENST00000468384 PDK4Q16654 411 aa3.43□□□□□ -1.86
HMGB1-207ENST00000468384 WDR38Q5JTN6 314 aa3.43□□□□□ -1.86
HMGB1-207ENST00000468384 ANXA8L1Q5VT79 327 aa3.43□□□□□ -1.86
HMGB1-207ENST00000468384 CD164L2Q6UWJ8 174 aa3.43□□□□□ -1.86
HMGB1-207ENST00000468384 Q6ZRU5 148 aa3.43□□□□□ -1.86
HMGB1-207ENST00000468384 SLC16A9Q7RTY1 509 aa3.43□□□□□ -1.86
HMGB1-207ENST00000468384 LINC00523Q86TU6 105 aa3.43□□□□□ -1.86
HMGB1-207ENST00000468384 NKAIN4Q8IVV8 208 aa3.43□□□□□ -1.86
HMGB1-207ENST00000468384 C20orf196Q8IYI0 205 aa3.43□□□□□ -1.86
HMGB1-207ENST00000468384 OR5AS1Q8N127 324 aa3.43□□□□□ -1.86
HMGB1-207ENST00000468384 TMEM123Q8N131 208 aa3.43□□□□□ -1.86
HMGB1-207ENST00000468384 CENPSQ8N2Z9 138 aa3.43□□□□□ -1.86
HMGB1-207ENST00000468384 C10orf111Q8N326 155 aa3.43□□□□□ -1.86
HMGB1-207ENST00000468384 SLC22A24Q8N4F4 322 aa3.43□□□□□ -1.86
HMGB1-207ENST00000468384 RNF148Q8N7C7 305 aa3.43□□□□□ -1.86
HMGB1-207ENST00000468384 OR13C5Q8NGS8 318 aa3.43□□□□□ -1.86
HMGB1-207ENST00000468384 OR13G1Q8NGZ3 307 aa3.43□□□□□ -1.86
HMGB1-207ENST00000468384 ITFG2Q969R8 447 aa3.43□□□□□ -1.86
HMGB1-207ENST00000468384 DDIT4LQ96D03 193 aa3.43□□□□□ -1.86
HMGB1-207ENST00000468384 CMBLQ96DG6 245 aa3.43□□□□□ -1.86
HMGB1-207ENST00000468384 TPD52L3Q96J77 140 aa3.43□□□□□ -1.86
HMGB1-207ENST00000468384 POM121L2Q96KW2 1035 aa3.43□□□□□ -1.86
HMGB1-207ENST00000468384 COQ7Q99807 217 aa3.43□□□□□ -1.86
HMGB1-207ENST00000468384 PAIP2Q9BPZ3 127 aaKnown RBP3.43□□□□□ -1.86
HMGB1-207ENST00000468384 SYT11Q9BT88 431 aa3.43□□□□□ -1.86
HMGB1-207ENST00000468384 TOLLIPQ9H0E2 274 aa3.43□□□□□ -1.86
HMGB1-207ENST00000468384 ROPN1Q9HAT0 212 aaPredicted RBP3.43□□□□□ -1.86
HMGB1-207ENST00000468384 PLEKHA1Q9HB21 404 aa3.43□□□□□ -1.86
HMGB1-207ENST00000468384 ZNF355PQ9NSJ1 428 aa3.43□□□□□ -1.86
HMGB1-207ENST00000468384 RASD1Q9Y272 281 aa3.43□□□□□ -1.86
HMGB1-207ENST00000468384 A0A1W2PN81 502 aa3.42□□□□□ -1.86
HMGB1-207ENST00000468384 HNRNPCL2B2RXH8 293 aa3.42□□□□□ -1.86
HMGB1-207ENST00000468384 H3BNX3 289 aa3.42□□□□□ -1.86
HMGB1-207ENST00000468384 H7C0C1 242 aa3.42□□□□□ -1.86
HMGB1-207ENST00000468384 K7EQM0 130 aa3.42□□□□□ -1.86
HMGB1-207ENST00000468384 UPK1AO00322 258 aa3.42□□□□□ -1.86
HMGB1-207ENST00000468384 DLGAP1O14490 977 aa3.42□□□□□ -1.86
HMGB1-207ENST00000468384 CIB2O75838 187 aa3.42□□□□□ -1.86
HMGB1-207ENST00000468384 OR6A2O95222 327 aa3.42□□□□□ -1.86
HMGB1-207ENST00000468384 SERPINA3P01011 423 aa3.42□□□□□ -1.86
HMGB1-207ENST00000468384 GPIP06744 558 aa3.42□□□□□ -1.86
HMGB1-207ENST00000468384 KLK1P06870 262 aa3.42□□□□□ -1.86
HMGB1-207ENST00000468384 PRSS2P07478 247 aa3.42□□□□□ -1.86
HMGB1-207ENST00000468384 ZNF735P0CB33 412 aa3.42□□□□□ -1.86
HMGB1-207ENST00000468384 FCGR2BP31994 310 aaPredicted RBP3.42□□□□□ -1.86
HMGB1-207ENST00000468384 BRS3P32247 399 aa3.42□□□□□ -1.86
HMGB1-207ENST00000468384 CHRNA7P36544 502 aa3.42□□□□□ -1.86
HMGB1-207ENST00000468384 PPP1R2P41236 205 aa3.42□□□□□ -1.86
HMGB1-207ENST00000468384 NDUFA8P51970 172 aa3.42□□□□□ -1.86
HMGB1-207ENST00000468384 ARHGDIAP52565 204 aa3.42□□□□□ -1.86
HMGB1-207ENST00000468384 OPCMLQ14982 345 aa3.42□□□□□ -1.86
HMGB1-207ENST00000468384 SPCS2Q15005 226 aa3.42□□□□□ -1.86
HMGB1-207ENST00000468384 STX1AQ16623 288 aa3.42□□□□□ -1.86
HMGB1-207ENST00000468384 PARP6Q2NL67 630 aa3.42□□□□□ -1.86
HMGB1-207ENST00000468384 SLC35D3Q5M8T2 416 aa3.42□□□□□ -1.86
HMGB1-207ENST00000468384 CARD17Q5XLA6 110 aa3.42□□□□□ -1.86
HMGB1-207ENST00000468384 SLC25A47Q6Q0C1 308 aa3.42□□□□□ -1.86
HMGB1-207ENST00000468384 SLC36A1Q7Z2H8 476 aa3.42□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms