RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 COLCA1Q6ZS62 124 aa7.72□□□□□ -1.17
SYNE1-217ENST00000466159 OR56B2PQ8NGI1 322 aa7.72□□□□□ -1.17
SYNE1-217ENST00000466159 RNF141Q8WVD5 230 aa7.72□□□□□ -1.17
SYNE1-217ENST00000466159 LRRC46Q96FV0 321 aa7.72□□□□□ -1.17
SYNE1-217ENST00000466159 CNTNAP3BQ96NU0 1288 aa7.72□□□□□ -1.17
SYNE1-217ENST00000466159 PAPOLGQ9BWT3 736 aaKnown RBP7.72□□□□□ -1.17
SYNE1-217ENST00000466159 CNTNAP3Q9BZ76 1288 aa7.72□□□□□ -1.17
SYNE1-217ENST00000466159 TMEM100Q9NV29 134 aa7.72□□□□□ -1.17
SYNE1-217ENST00000466159 IL36GQ9NZH8 169 aa7.72□□□□□ -1.17
SYNE1-217ENST00000466159 B4GALT7Q9UBV7 327 aa7.72□□□□□ -1.17
SYNE1-217ENST00000466159 ZNF629Q9UEG4 869 aaPredicted RBP7.72□□□□□ -1.17
SYNE1-217ENST00000466159 IL17BQ9UHF5 180 aa7.72□□□□□ -1.17
SYNE1-217ENST00000466159 GLS2Q9UI32 602 aa7.72□□□□□ -1.17
SYNE1-217ENST00000466159 MEMO1Q9Y316 297 aa7.72□□□□□ -1.17
SYNE1-217ENST00000466159 C5orf49A4QMS7 147 aa7.71□□□□□ -1.17
SYNE1-217ENST00000466159 LINC01387J3KSC0 135 aa7.71□□□□□ -1.17
SYNE1-217ENST00000466159 BET1O15155 118 aa7.71□□□□□ -1.17
SYNE1-217ENST00000466159 PDCD6O75340 191 aa7.71□□□□□ -1.17
SYNE1-217ENST00000466159 ACTL6AO96019 429 aa7.71□□□□□ -1.17
SYNE1-217ENST00000466159 OR5AC1P0C628 307 aa7.71□□□□□ -1.17
SYNE1-217ENST00000466159 CD79AP11912 226 aa7.71□□□□□ -1.17
SYNE1-217ENST00000466159 MALLQ13021 153 aa7.71□□□□□ -1.17
SYNE1-217ENST00000466159 ZNF273Q14593 569 aa7.71□□□□□ -1.17
SYNE1-217ENST00000466159 NRN1LQ496H8 165 aa7.71□□□□□ -1.17
SYNE1-217ENST00000466159 TMEM164Q5U3C3 297 aa7.71□□□□□ -1.17
SYNE1-217ENST00000466159 RPL7L1Q6DKI1 246 aaKnown RBP7.71□□□□□ -1.17
SYNE1-217ENST00000466159 C5orf24Q7Z6I8 188 aa7.71□□□□□ -1.17
SYNE1-217ENST00000466159 TMEM251Q8N6I4 163 aa7.71□□□□□ -1.17
SYNE1-217ENST00000466159 RTN4IP1Q8WWV3 396 aaPredicted RBP7.71□□□□□ -1.17
SYNE1-217ENST00000466159 GPR87Q9BY21 358 aa7.71□□□□□ -1.17
SYNE1-217ENST00000466159 LINC00470Q9BZP3 86 aa7.71□□□□□ -1.17
SYNE1-217ENST00000466159 FGF23Q9GZV9 251 aaPredicted RBP7.71□□□□□ -1.17
SYNE1-217ENST00000466159 ZNF442Q9H7R0 627 aa7.71□□□□□ -1.17
SYNE1-217ENST00000466159 PARPBPQ9NWS1 579 aa7.71□□□□□ -1.17
SYNE1-217ENST00000466159 DNAJB11Q9UBS4 358 aa7.71□□□□□ -1.17
SYNE1-217ENST00000466159 KMT2EQ8IZD2 1858 aa7.71□□□□□ -1.18
SYNE1-217ENST00000466159 CDX4O14627 284 aaPredicted RBP7.71□□□□□ -1.18
SYNE1-217ENST00000466159 TSPAN9O75954 239 aa7.71□□□□□ -1.18
SYNE1-217ENST00000466159 RCC1P18754 421 aaPredicted RBP7.71□□□□□ -1.18
SYNE1-217ENST00000466159 SRSF3P84103 164 aaKnown RBP7.71□□□□□ -1.18
SYNE1-217ENST00000466159 STK11Q15831 433 aa7.71□□□□□ -1.18
SYNE1-217ENST00000466159 ABCA11PQ4W5N1 156 aa7.71□□□□□ -1.18
SYNE1-217ENST00000466159 FAM122CQ6P4D5 195 aa7.71□□□□□ -1.18
SYNE1-217ENST00000466159 OR11L1Q8NGX0 322 aa7.71□□□□□ -1.18
SYNE1-217ENST00000466159 LHFPL5Q8TAF8 219 aa7.71□□□□□ -1.18
SYNE1-217ENST00000466159 ADAMTS17Q8TE56 1095 aa7.71□□□□□ -1.18
SYNE1-217ENST00000466159 HS3ST6Q96QI5 342 aa7.71□□□□□ -1.18
SYNE1-217ENST00000466159 REPIN1Q9BWE0 567 aaKnown RBP7.71□□□□□ -1.18
SYNE1-217ENST00000466159 ZC4H2Q9NQZ6 224 aa7.71□□□□□ -1.18
SYNE1-217ENST00000466159 LSM5Q9Y4Y9 91 aaKnown RBP7.71□□□□□ -1.18
SYNE1-217ENST00000466159 LOC400499M0QZD8 3231 aa7.7□□□□□ -1.18
SYNE1-217ENST00000466159 RAB19A4D1S5 217 aa7.7□□□□□ -1.18
SYNE1-217ENST00000466159 SYNGR4O95473 234 aa7.7□□□□□ -1.18
SYNE1-217ENST00000466159 SCGB1D2O95969 90 aa7.7□□□□□ -1.18
SYNE1-217ENST00000466159 NGFP01138 241 aa7.7□□□□□ -1.18
SYNE1-217ENST00000466159 IFNA21P01568 189 aa7.7□□□□□ -1.18
SYNE1-217ENST00000466159 SPINK2P20155 84 aa7.7□□□□□ -1.18
SYNE1-217ENST00000466159 BCL3P20749 454 aa7.7□□□□□ -1.18
SYNE1-217ENST00000466159 FUT3P21217 361 aa7.7□□□□□ -1.18
SYNE1-217ENST00000466159 GPM6AP51674 278 aa7.7□□□□□ -1.18
SYNE1-217ENST00000466159 PLGLB1Q02325 96 aa7.7□□□□□ -1.18
SYNE1-217ENST00000466159 PRDX4Q13162 271 aa7.7□□□□□ -1.18
SYNE1-217ENST00000466159 TMEM187Q14656 261 aa7.7□□□□□ -1.18
SYNE1-217ENST00000466159 LYZL2Q7Z4W2 148 aa7.7□□□□□ -1.18
SYNE1-217ENST00000466159 CCDC36Q8IYA8 594 aa7.7□□□□□ -1.18
SYNE1-217ENST00000466159 OR5L1Q8NGL2 311 aa7.7□□□□□ -1.18
SYNE1-217ENST00000466159 SLAMF9Q96A28 289 aa7.7□□□□□ -1.18
SYNE1-217ENST00000466159 NAA60Q9H7X0 242 aa7.7□□□□□ -1.18
SYNE1-217ENST00000466159 ZNF286AQ9HBT8 521 aa7.7□□□□□ -1.18
SYNE1-217ENST00000466159 SLC2A9Q9NRM0 540 aa7.7□□□□□ -1.18
SYNE1-217ENST00000466159 TUBD1Q9UJT1 453 aa7.7□□□□□ -1.18
SYNE1-217ENST00000466159 KCNIP3Q9Y2W7 256 aa7.7□□□□□ -1.18
SYNE1-217ENST00000466159 ZNF705EA8MWA4 302 aaPredicted RBP7.7□□□□□ -1.18
SYNE1-217ENST00000466159 C21orf140B9A014 251 aa7.7□□□□□ -1.18
SYNE1-217ENST00000466159 RPL36A-HNRNPH2H7BZ11 118 aa7.7□□□□□ -1.18
SYNE1-217ENST00000466159 ABCD4O14678 606 aa7.7□□□□□ -1.18
SYNE1-217ENST00000466159 DEDDO75618 318 aa7.7□□□□□ -1.18
SYNE1-217ENST00000466159 MT-CO3P00414 261 aa7.7□□□□□ -1.18
SYNE1-217ENST00000466159 RPL12P30050 165 aaKnown RBP7.7□□□□□ -1.18
SYNE1-217ENST00000466159 HAAOP46952 286 aa7.7□□□□□ -1.18
SYNE1-217ENST00000466159 MST1LQ2TV78 715 aa7.7□□□□□ -1.18
SYNE1-217ENST00000466159 IGSF11Q5DX21 431 aa7.7□□□□□ -1.18
SYNE1-217ENST00000466159 DHRS13Q6UX07 377 aa7.7□□□□□ -1.18
SYNE1-217ENST00000466159 CLEC9AQ6UXN8 241 aa7.7□□□□□ -1.18
SYNE1-217ENST00000466159 HPSE2Q8WWQ2 592 aa7.7□□□□□ -1.18
SYNE1-217ENST00000466159 WNT2BQ93097 391 aa7.7□□□□□ -1.18
SYNE1-217ENST00000466159 TECTBQ96PL2 329 aa7.7□□□□□ -1.18
SYNE1-217ENST00000466159 ABI3Q9P2A4 366 aa7.7□□□□□ -1.18
SYNE1-217ENST00000466159 BDP1A6H8Y1 2624 aa7.7□□□□□ -1.18
SYNE1-217ENST00000466159 PQLC2LA1A4F0 135 aa7.69□□□□□ -1.18
SYNE1-217ENST00000466159 TMEM218A2RU14 115 aa7.69□□□□□ -1.18
SYNE1-217ENST00000466159 K7EPK0 472 aa7.69□□□□□ -1.18
SYNE1-217ENST00000466159 DNASE2O00115 360 aaPredicted RBP7.69□□□□□ -1.18
SYNE1-217ENST00000466159 LRP3O75074 770 aa7.69□□□□□ -1.18
SYNE1-217ENST00000466159 ADCYAP1P18509 176 aa7.69□□□□□ -1.18
SYNE1-217ENST00000466159 AADACP22760 399 aa7.69□□□□□ -1.18
SYNE1-217ENST00000466159 NOVA1P51513 510 aaKnown RBP7.69□□□□□ -1.18
SYNE1-217ENST00000466159 RAB1AP62820 205 aa7.69□□□□□ -1.18
SYNE1-217ENST00000466159 CTAG1AP78358 180 aa7.69□□□□□ -1.18
SYNE1-217ENST00000466159 UQCC3Q6UW78 93 aa7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms