RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 TRIB1Q96RU8 372 aa16.83■□□□□ 0.29
CCDC88B-204ENST00000463837 GINS3Q9BRX5 216 aa16.83■□□□□ 0.29
CCDC88B-204ENST00000463837 STARD10Q9Y365 291 aa16.83■□□□□ 0.29
CCDC88B-204ENST00000463837 SIRT4Q9Y6E7 314 aaPredicted RBP16.83■□□□□ 0.29
CCDC88B-204ENST00000463837 ATP23Q9Y6H3 246 aa16.83■□□□□ 0.29
CCDC88B-204ENST00000463837 KRASP01116 189 aa16.83■□□□□ 0.29
CCDC88B-204ENST00000463837 C9orf152Q5JTZ5 239 aa16.83■□□□□ 0.29
CCDC88B-204ENST00000463837 LAIR2Q6ISS4 152 aa16.83■□□□□ 0.29
CCDC88B-204ENST00000463837 NEIL1Q96FI4 390 aaPredicted RBP16.83■□□□□ 0.29
CCDC88B-204ENST00000463837 TMEM147Q9BVK8 224 aa16.83■□□□□ 0.29
CCDC88B-204ENST00000463837 CDRT15L2A8MXV6 281 aa16.83■□□□□ 0.28
CCDC88B-204ENST00000463837 PMS2P11Q13670 270 aa16.83■□□□□ 0.28
CCDC88B-204ENST00000463837 UBALD1Q8TB05 177 aa16.83■□□□□ 0.28
CCDC88B-204ENST00000463837 MPZL1O95297 269 aa16.83■□□□□ 0.28
CCDC88B-204ENST00000463837 ARL16Q0P5N6 197 aa16.83■□□□□ 0.28
CCDC88B-204ENST00000463837 WDR73Q6P4I2 378 aa16.83■□□□□ 0.28
CCDC88B-204ENST00000463837 DEFB108BQ8NET1 73 aa16.83■□□□□ 0.28
CCDC88B-204ENST00000463837 TAAR3PQ9P1P4 343 aa16.83■□□□□ 0.28
CCDC88B-204ENST00000463837 ERRFI1Q9UJM3 462 aaPredicted RBP16.83■□□□□ 0.28
CCDC88B-204ENST00000463837 ST8SIA5O15466 376 aa16.83■□□□□ 0.28
CCDC88B-204ENST00000463837 CDS2O95674 445 aa16.83■□□□□ 0.28
CCDC88B-204ENST00000463837 FAM74A3Q4VXF1 159 aa16.83■□□□□ 0.28
CCDC88B-204ENST00000463837 TCTEX1D1Q8N7M0 179 aa16.83■□□□□ 0.28
CCDC88B-204ENST00000463837 POM121L2Q96KW2 1035 aa16.83■□□□□ 0.28
CCDC88B-204ENST00000463837 COL4A1P02462 1669 aa16.82■□□□□ 0.28
CCDC88B-204ENST00000463837 ADAMTSL1Q8N6G6 1762 aa16.82■□□□□ 0.28
CCDC88B-204ENST00000463837 CYR61O00622 381 aa16.82■□□□□ 0.28
CCDC88B-204ENST00000463837 CST2P09228 141 aa16.82■□□□□ 0.28
CCDC88B-204ENST00000463837 COX19Q49B96 90 aa16.82■□□□□ 0.28
CCDC88B-204ENST00000463837 DPPA3Q6W0C5 159 aa16.82■□□□□ 0.28
CCDC88B-204ENST00000463837 NRTNQ99748 197 aa16.82■□□□□ 0.28
CCDC88B-204ENST00000463837 STRCP1A6NGW2 1772 aa16.82■□□□□ 0.28
CCDC88B-204ENST00000463837 TRGV8A0A0C4DH27 118 aa16.82■□□□□ 0.28
CCDC88B-204ENST00000463837 ANKRD37Q7Z713 158 aa16.82■□□□□ 0.28
CCDC88B-204ENST00000463837 M1APQ8TC57 530 aa16.82■□□□□ 0.28
CCDC88B-204ENST00000463837 GPR87Q9BY21 358 aa16.82■□□□□ 0.28
CCDC88B-204ENST00000463837 COX7A2P2O60397 106 aa16.82■□□□□ 0.28
CCDC88B-204ENST00000463837 GCM2O75603 506 aaPredicted RBP16.82■□□□□ 0.28
CCDC88B-204ENST00000463837 PTBP3O95758 552 aaKnown RBP16.82■□□□□ 0.28
CCDC88B-204ENST00000463837 PNPP00491 289 aa16.82■□□□□ 0.28
CCDC88B-204ENST00000463837 MICBQ29980 383 aa16.82■□□□□ 0.28
CCDC88B-204ENST00000463837 BSXQ3C1V8 233 aa16.82■□□□□ 0.28
CCDC88B-204ENST00000463837 CACNG5Q9UF02 275 aa16.82■□□□□ 0.28
CCDC88B-204ENST00000463837 MMP16P51512 607 aa16.82■□□□□ 0.28
CCDC88B-204ENST00000463837 SKP2Q13309 424 aa16.82■□□□□ 0.28
CCDC88B-204ENST00000463837 FSTP19883 344 aa16.81■□□□□ 0.28
CCDC88B-204ENST00000463837 RNF133Q8WVZ7 376 aa16.81■□□□□ 0.28
CCDC88B-204ENST00000463837 SLC45A2Q9UMX9 530 aa16.81■□□□□ 0.28
CCDC88B-204ENST00000463837 AMDHD2Q9Y303 409 aa16.81■□□□□ 0.28
CCDC88B-204ENST00000463837 QSER1Q2KHR3 1735 aa16.81■□□□□ 0.28
CCDC88B-204ENST00000463837 SOCS1O15524 211 aa16.81■□□□□ 0.28
CCDC88B-204ENST00000463837 VSIG10L2P0DP72 767 aa16.81■□□□□ 0.28
CCDC88B-204ENST00000463837 CTGFP29279 349 aa16.81■□□□□ 0.28
CCDC88B-204ENST00000463837 LPAR6P43657 344 aa16.81■□□□□ 0.28
CCDC88B-204ENST00000463837 OR4C5Q8NGB2 326 aa16.81■□□□□ 0.28
CCDC88B-204ENST00000463837 OR11G2Q8NGC1 345 aa16.81■□□□□ 0.28
CCDC88B-204ENST00000463837 BGLAPP02818 100 aa16.81■□□□□ 0.28
CCDC88B-204ENST00000463837 VDAC1P21796 283 aa16.81■□□□□ 0.28
CCDC88B-204ENST00000463837 CDC34P49427 236 aaPredicted RBP16.81■□□□□ 0.28
CCDC88B-204ENST00000463837 DYNLT3P51808 116 aa16.81■□□□□ 0.28
CCDC88B-204ENST00000463837 PRDX4Q13162 271 aa16.81■□□□□ 0.28
CCDC88B-204ENST00000463837 CD226Q15762 336 aa16.81■□□□□ 0.28
CCDC88B-204ENST00000463837 C17orf78Q8N4C9 275 aa16.81■□□□□ 0.28
CCDC88B-204ENST00000463837 OR1L3Q8NH93 324 aa16.81■□□□□ 0.28
CCDC88B-204ENST00000463837 MIOXQ9UGB7 285 aa16.81■□□□□ 0.28
CCDC88B-204ENST00000463837 LIPGQ9Y5X9 500 aa16.81■□□□□ 0.28
CCDC88B-204ENST00000463837 M0R143 59 aa16.81■□□□□ 0.28
CCDC88B-204ENST00000463837 C1QCP02747 245 aa16.81■□□□□ 0.28
CCDC88B-204ENST00000463837 GNB1P62873 340 aa16.81■□□□□ 0.28
CCDC88B-204ENST00000463837 PRSS27Q9BQR3 290 aa16.81■□□□□ 0.28
CCDC88B-204ENST00000463837 VSIG4Q9Y279 399 aa16.81■□□□□ 0.28
CCDC88B-204ENST00000463837 CLEC3BP05452 202 aa16.8■□□□□ 0.28
CCDC88B-204ENST00000463837 FOXO1Q12778 655 aa16.8■□□□□ 0.28
CCDC88B-204ENST00000463837 OR2T10Q8NGZ9 312 aa16.8■□□□□ 0.28
CCDC88B-204ENST00000463837 M0QZK8 103 aa16.8■□□□□ 0.28
CCDC88B-204ENST00000463837 GGCTO75223 188 aaKnown RBP16.8■□□□□ 0.28
CCDC88B-204ENST00000463837 PIAS2O75928 621 aa16.8■□□□□ 0.28
CCDC88B-204ENST00000463837 CHRNA7P36544 502 aa16.8■□□□□ 0.28
CCDC88B-204ENST00000463837 KIR2DS2P43631 304 aa16.8■□□□□ 0.28
CCDC88B-204ENST00000463837 CCL7P80098 99 aa16.8■□□□□ 0.28
CCDC88B-204ENST00000463837 FOXC1Q12948 553 aa16.8■□□□□ 0.28
CCDC88B-204ENST00000463837 OR10G3Q8NGC4 313 aa16.8■□□□□ 0.28
CCDC88B-204ENST00000463837 OR10G4Q8NGN3 311 aa16.8■□□□□ 0.28
CCDC88B-204ENST00000463837 OR10G9Q8NGN4 311 aa16.8■□□□□ 0.28
CCDC88B-204ENST00000463837 OR10G7Q8NGN6 311 aa16.8■□□□□ 0.28
CCDC88B-204ENST00000463837 OR10X1Q8NGY0 326 aa16.8■□□□□ 0.28
CCDC88B-204ENST00000463837 MFRPQ9BY79 579 aa16.8■□□□□ 0.28
CCDC88B-204ENST00000463837 TRAV17A0A0B4J275 112 aa16.8■□□□□ 0.28
CCDC88B-204ENST00000463837 GATCO43716 136 aaKnown RBP16.8■□□□□ 0.28
CCDC88B-204ENST00000463837 ANKRD34CP0C6C1 535 aa16.8■□□□□ 0.28
CCDC88B-204ENST00000463837 FGF8P55075 233 aaPredicted RBP16.8■□□□□ 0.28
CCDC88B-204ENST00000463837 Q6ZS52 159 aa16.8■□□□□ 0.28
CCDC88B-204ENST00000463837 GABRG3Q99928 467 aa16.8■□□□□ 0.28
CCDC88B-204ENST00000463837 SF3B6Q9Y3B4 125 aaKnown RBP16.8■□□□□ 0.28
CCDC88B-204ENST00000463837 A0A087X0M5 115 aa16.8■□□□□ 0.28
CCDC88B-204ENST00000463837 A0A1B0GX30 115 aa16.8■□□□□ 0.28
CCDC88B-204ENST00000463837 HLA-GP17693 338 aa16.8■□□□□ 0.28
CCDC88B-204ENST00000463837 LBHQ53QV2 105 aaPredicted RBP16.8■□□□□ 0.28
CCDC88B-204ENST00000463837 MYPOPQ86VE0 399 aaPredicted RBP16.8■□□□□ 0.28
CCDC88B-204ENST00000463837 NOL4LQ96MY1 436 aaPredicted RBP16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms