RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 GRK1Q15835 563 aa12.92□□□□□ -0.34
COL7A1-204ENST00000462475 MINOS1Q5TGZ0 78 aa12.92□□□□□ -0.34
COL7A1-204ENST00000462475 EGFL6Q8IUX8 553 aa12.92□□□□□ -0.34
COL7A1-204ENST00000462475 NDNFQ8TB73 568 aa12.92□□□□□ -0.34
COL7A1-204ENST00000462475 SLC7A6OSQ96CW6 309 aaPredicted RBP12.92□□□□□ -0.34
COL7A1-204ENST00000462475 OCSTAMPQ9BR26 566 aa12.92□□□□□ -0.34
COL7A1-204ENST00000462475 RBFOX1Q9NWB1 397 aaKnown RBP12.92□□□□□ -0.34
COL7A1-204ENST00000462475 LINC00312Q9Y6C7 94 aa12.92□□□□□ -0.34
COL7A1-204ENST00000462475 MINOS1-NBL1R4GNA1 71 aa12.92□□□□□ -0.34
COL7A1-204ENST00000462475 LOC107986453A0A1B0GWG9 222 aa12.91□□□□□ -0.34
COL7A1-204ENST00000462475 A0A1W2PRX2 142 aa12.91□□□□□ -0.34
COL7A1-204ENST00000462475 METTL15A6NJ78 407 aa12.91□□□□□ -0.34
COL7A1-204ENST00000462475 PSPNO60542 156 aa12.91□□□□□ -0.34
COL7A1-204ENST00000462475 MMP23AO75900 390 aa12.91□□□□□ -0.34
COL7A1-204ENST00000462475 DNAJC8O75937 253 aaPredicted RBP12.91□□□□□ -0.34
COL7A1-204ENST00000462475 ALX3O95076 343 aa12.91□□□□□ -0.34
COL7A1-204ENST00000462475 GABRR1P24046 479 aa12.91□□□□□ -0.34
COL7A1-204ENST00000462475 NPBWR2P48146 333 aa12.91□□□□□ -0.34
COL7A1-204ENST00000462475 LOXL3P58215 753 aa12.91□□□□□ -0.34
COL7A1-204ENST00000462475 ZNF91Q05481 1191 aa12.91□□□□□ -0.34
COL7A1-204ENST00000462475 KDM4DQ6B0I6 523 aa12.91□□□□□ -0.34
COL7A1-204ENST00000462475 PRSS35Q8N3Z0 413 aa12.91□□□□□ -0.34
COL7A1-204ENST00000462475 OR4P4Q8NGL7 312 aa12.91□□□□□ -0.34
COL7A1-204ENST00000462475 BORCS8Q96FH0 119 aa12.91□□□□□ -0.34
COL7A1-204ENST00000462475 TMEM133Q9H2Q1 129 aa12.91□□□□□ -0.34
COL7A1-204ENST00000462475 WARS2Q9UGM6 360 aaKnown RBP12.91□□□□□ -0.34
COL7A1-204ENST00000462475 ZNF281Q9Y2X9 895 aa12.91□□□□□ -0.34
COL7A1-204ENST00000462475 KMT2CQ8NEZ4 4911 aaKnown RBP12.91□□□□□ -0.34
COL7A1-204ENST00000462475 FAM90A22PA8MWA6 464 aa12.9□□□□□ -0.34
COL7A1-204ENST00000462475 ALDOBP05062 364 aa12.9□□□□□ -0.34
COL7A1-204ENST00000462475 CALCBP10092 127 aa12.9□□□□□ -0.34
COL7A1-204ENST00000462475 BCL3P20749 454 aa12.9□□□□□ -0.34
COL7A1-204ENST00000462475 PEX2P28328 305 aa12.9□□□□□ -0.34
COL7A1-204ENST00000462475 HTR1FP30939 366 aa12.9□□□□□ -0.34
COL7A1-204ENST00000462475 KIR3DL2P43630 455 aa12.9□□□□□ -0.34
COL7A1-204ENST00000462475 POU3F4P49335 361 aa12.9□□□□□ -0.34
COL7A1-204ENST00000462475 SNU13P55769 128 aaKnown RBP12.9□□□□□ -0.34
COL7A1-204ENST00000462475 ATP6AP1Q15904 470 aa12.9□□□□□ -0.34
COL7A1-204ENST00000462475 BAIAP2L2Q6UXY1 529 aa12.9□□□□□ -0.34
COL7A1-204ENST00000462475 RDH10Q8IZV5 341 aa12.9□□□□□ -0.34
COL7A1-204ENST00000462475 OR10H4Q8NGA5 316 aa12.9□□□□□ -0.34
COL7A1-204ENST00000462475 CLEC7AQ9BXN2 247 aa12.9□□□□□ -0.34
COL7A1-204ENST00000462475 GABARAPL1Q9H0R8 117 aa12.9□□□□□ -0.34
COL7A1-204ENST00000462475 DSCAML1Q8TD84 2053 aa12.89□□□□□ -0.35
COL7A1-204ENST00000462475 IGKV1-9A0A0C4DH69 117 aa12.89□□□□□ -0.35
COL7A1-204ENST00000462475 TRBV2A0A0J9YWF9 115 aa12.89□□□□□ -0.35
COL7A1-204ENST00000462475 G3V2T6 193 aa12.89□□□□□ -0.35
COL7A1-204ENST00000462475 ENTPD6O75354 484 aa12.89□□□□□ -0.35
COL7A1-204ENST00000462475 OR2T7P0C7T2 308 aa12.89□□□□□ -0.35
COL7A1-204ENST00000462475 IGLL1P15814 213 aa12.89□□□□□ -0.35
COL7A1-204ENST00000462475 CD24P25063 80 aa12.89□□□□□ -0.35
COL7A1-204ENST00000462475 AZGP1P25311 298 aaKnown RBP12.89□□□□□ -0.35
COL7A1-204ENST00000462475 OR3A1P47881 315 aa12.89□□□□□ -0.35
COL7A1-204ENST00000462475 P2RX3P56373 397 aa12.89□□□□□ -0.35
COL7A1-204ENST00000462475 CD83Q01151 205 aa12.89□□□□□ -0.35
COL7A1-204ENST00000462475 PRAMEF5Q5TYX0 476 aa12.89□□□□□ -0.35
COL7A1-204ENST00000462475 FOXB2Q5VYV0 432 aa12.89□□□□□ -0.35
COL7A1-204ENST00000462475 TRAPPC6BQ86SZ2 158 aa12.89□□□□□ -0.35
COL7A1-204ENST00000462475 Q8IYB0 196 aa12.89□□□□□ -0.35
COL7A1-204ENST00000462475 FAM58AQ8N1B3 248 aa12.89□□□□□ -0.35
COL7A1-204ENST00000462475 OR5AU1Q8NGC0 362 aa12.89□□□□□ -0.35
COL7A1-204ENST00000462475 RNF166Q96A37 237 aaPredicted RBP12.89□□□□□ -0.35
COL7A1-204ENST00000462475 ADAT3Q96EY9 351 aaPredicted RBP12.89□□□□□ -0.35
COL7A1-204ENST00000462475 ADI1Q9BV57 179 aa12.89□□□□□ -0.35
COL7A1-204ENST00000462475 SEBOXQ9HB31 216 aaPredicted RBP12.89□□□□□ -0.35
COL7A1-204ENST00000462475 FAM172BPA6NC97 362 aa12.88□□□□□ -0.35
COL7A1-204ENST00000462475 SIRPB1O00241 398 aa12.88□□□□□ -0.35
COL7A1-204ENST00000462475 MGST3O14880 152 aa12.88□□□□□ -0.35
COL7A1-204ENST00000462475 SULT1C4O75897 302 aa12.88□□□□□ -0.35
COL7A1-204ENST00000462475 SERPINA3P01011 423 aa12.88□□□□□ -0.35
COL7A1-204ENST00000462475 UBCP0CG48 685 aaKnown RBP12.88□□□□□ -0.35
COL7A1-204ENST00000462475 PRKACAP17612 351 aa12.88□□□□□ -0.35
COL7A1-204ENST00000462475 CD33P20138 364 aa12.88□□□□□ -0.35
COL7A1-204ENST00000462475 HTR1DP28221 377 aa12.88□□□□□ -0.35
COL7A1-204ENST00000462475 POLR2IP36954 125 aaKnown RBP12.88□□□□□ -0.35
COL7A1-204ENST00000462475 RBP2P50120 134 aa12.88□□□□□ -0.35
COL7A1-204ENST00000462475 ISL1P61371 349 aa12.88□□□□□ -0.35
COL7A1-204ENST00000462475 ZNF146Q15072 292 aa12.88□□□□□ -0.35
COL7A1-204ENST00000462475 TP53I3Q53FA7 332 aa12.88□□□□□ -0.35
COL7A1-204ENST00000462475 TCTEX1D4Q5JR98 221 aa12.88□□□□□ -0.35
COL7A1-204ENST00000462475 ENTHD1Q8IYW4 607 aa12.88□□□□□ -0.35
COL7A1-204ENST00000462475 CCDC54Q8NEL0 328 aa12.88□□□□□ -0.35
COL7A1-204ENST00000462475 PP6455Q8WZ26 134 aa12.88□□□□□ -0.35
COL7A1-204ENST00000462475 CIB1Q99828 191 aa12.88□□□□□ -0.35
COL7A1-204ENST00000462475 GNG8Q9UK08 70 aa12.88□□□□□ -0.35
COL7A1-204ENST00000462475 PF4V1P10720 104 aa12.87□□□□□ -0.35
COL7A1-204ENST00000462475 ERP29P30040 261 aaKnown RBP12.87□□□□□ -0.35
COL7A1-204ENST00000462475 ATP1B3P54709 279 aa12.87□□□□□ -0.35
COL7A1-204ENST00000462475 ZNF85Q03923 595 aa12.87□□□□□ -0.35
COL7A1-204ENST00000462475 IL18R1Q13478 541 aa12.87□□□□□ -0.35
COL7A1-204ENST00000462475 SPIN3Q5JUX0 258 aa12.87□□□□□ -0.35
COL7A1-204ENST00000462475 ZBTB49Q6ZSB9 765 aa12.87□□□□□ -0.35
COL7A1-204ENST00000462475 FAM220AQ7Z4H9 259 aa12.87□□□□□ -0.35
COL7A1-204ENST00000462475 ZDHHC13Q8IUH4 622 aa12.87□□□□□ -0.35
COL7A1-204ENST00000462475 DNAAF1Q8NEP3 725 aa12.87□□□□□ -0.35
COL7A1-204ENST00000462475 WFDC9Q8NEX5 89 aa12.87□□□□□ -0.35
COL7A1-204ENST00000462475 C10orf35Q96D05 121 aa12.87□□□□□ -0.35
COL7A1-204ENST00000462475 UBE2J1Q9Y385 318 aaPredicted RBP12.87□□□□□ -0.35
COL7A1-204ENST00000462475 IGKV1-12A0A0C4DH73 117 aa12.86□□□□□ -0.35
COL7A1-204ENST00000462475 CYB5AP00167 134 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms