RNA–Protein interactions for RNA: ENST00000459756.5

COL7A1-203, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 818 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-203ENST00000459756 LIMS3P0CW19 117 aa13.17□□□□□ -0.3
COL7A1-203ENST00000459756 LIMS4P0CW20 117 aa13.17□□□□□ -0.3
COL7A1-203ENST00000459756 DCKP27707 260 aa13.17□□□□□ -0.3
COL7A1-203ENST00000459756 IL18R1Q13478 541 aa13.17□□□□□ -0.3
COL7A1-203ENST00000459756 MIDNQ504T8 468 aa13.17□□□□□ -0.3
COL7A1-203ENST00000459756 HCP5Q6MZN7 132 aa13.17□□□□□ -0.3
COL7A1-203ENST00000459756 GDPD3Q7L5L3 318 aa13.17□□□□□ -0.3
COL7A1-203ENST00000459756 OR8H2Q8N162 312 aa13.17□□□□□ -0.3
COL7A1-203ENST00000459756 FAM58AQ8N1B3 248 aa13.17□□□□□ -0.3
COL7A1-203ENST00000459756 PNKDQ8N490 385 aa13.17□□□□□ -0.3
COL7A1-203ENST00000459756 OR5D14Q8NGL3 314 aa13.17□□□□□ -0.3
COL7A1-203ENST00000459756 OR13C9Q8NGT0 318 aa13.17□□□□□ -0.3
COL7A1-203ENST00000459756 OR4F5Q8NH21 305 aa13.17□□□□□ -0.3
COL7A1-203ENST00000459756 TFAP2CQ92754 450 aa13.17□□□□□ -0.3
COL7A1-203ENST00000459756 TAF15Q92804 592 aaKnown RBP eCLIP13.17□□□□□ -0.3
COL7A1-203ENST00000459756 SNX22Q96L94 193 aa13.17□□□□□ -0.3
COL7A1-203ENST00000459756 ZCCHC4Q9H5U6 513 aa13.17□□□□□ -0.3
COL7A1-203ENST00000459756 HEXA-AS1Q9H8Q6 139 aa13.17□□□□□ -0.3
COL7A1-203ENST00000459756 RBFOX1Q9NWB1 397 aaKnown RBP13.17□□□□□ -0.3
COL7A1-203ENST00000459756 C1RLQ9NZP8 487 aa13.17□□□□□ -0.3
COL7A1-203ENST00000459756 SPRY1O43609 319 aaPredicted RBP13.16□□□□□ -0.3
COL7A1-203ENST00000459756 ANGPTL7O43827 346 aa13.16□□□□□ -0.3
COL7A1-203ENST00000459756 GPR137BO60478 399 aa13.16□□□□□ -0.3
COL7A1-203ENST00000459756 ALX3O95076 343 aa13.16□□□□□ -0.3
COL7A1-203ENST00000459756 HAND1O96004 215 aa13.16□□□□□ -0.3
COL7A1-203ENST00000459756 BCL3P20749 454 aa13.16□□□□□ -0.3
COL7A1-203ENST00000459756 MDKP21741 143 aaPredicted RBP13.16□□□□□ -0.3
COL7A1-203ENST00000459756 OMGP23515 440 aa13.16□□□□□ -0.3
COL7A1-203ENST00000459756 VHLP40337 213 aa13.16□□□□□ -0.3
COL7A1-203ENST00000459756 NPBWR2P48146 333 aa13.16□□□□□ -0.3
COL7A1-203ENST00000459756 RAG2P55895 527 aa13.16□□□□□ -0.3
COL7A1-203ENST00000459756 ZNF146Q15072 292 aa13.16□□□□□ -0.3
COL7A1-203ENST00000459756 CCDC58Q4VC31 144 aa13.16□□□□□ -0.3
COL7A1-203ENST00000459756 SPIN3Q5JUX0 258 aa13.16□□□□□ -0.3
COL7A1-203ENST00000459756 TMPRSS11AQ6ZMR5 421 aa13.16□□□□□ -0.3
COL7A1-203ENST00000459756 SERPINA12Q8IW75 414 aa13.16□□□□□ -0.3
COL7A1-203ENST00000459756 C11orf42Q8N5U0 333 aa13.16□□□□□ -0.3
COL7A1-203ENST00000459756 PARP16Q8N5Y8 322 aa13.16□□□□□ -0.3
COL7A1-203ENST00000459756 PDCD1LG2Q9BQ51 273 aa13.16□□□□□ -0.3
COL7A1-203ENST00000459756 RHOFQ9HBH0 211 aa13.16□□□□□ -0.3
COL7A1-203ENST00000459756 BEX1Q9HBH7 125 aa13.16□□□□□ -0.3
COL7A1-203ENST00000459756 GLS2Q9UI32 602 aa13.16□□□□□ -0.3
COL7A1-203ENST00000459756 DHDHQ9UQ10 334 aa13.16□□□□□ -0.3
COL7A1-203ENST00000459756 TMEM82A0PJX8 343 aa13.15□□□□□ -0.3
COL7A1-203ENST00000459756 H0YJX3 145 aa13.15□□□□□ -0.3
COL7A1-203ENST00000459756 RBP4P02753 201 aa13.15□□□□□ -0.3
COL7A1-203ENST00000459756 PIPP12273 146 aaPredicted RBP13.15□□□□□ -0.3
COL7A1-203ENST00000459756 CCL3L1P16619 93 aa13.15□□□□□ -0.3
COL7A1-203ENST00000459756 EDDM3BP56851 147 aa13.15□□□□□ -0.3
COL7A1-203ENST00000459756 ERVFRD-1P60508 538 aa13.15□□□□□ -0.3
COL7A1-203ENST00000459756 MEF2CQ06413 473 aaPredicted RBP13.15□□□□□ -0.3
COL7A1-203ENST00000459756 ZNF273Q14593 569 aa13.15□□□□□ -0.3
COL7A1-203ENST00000459756 GDPGP1Q6ZNW5 385 aa13.15□□□□□ -0.3
COL7A1-203ENST00000459756 SAXO1Q8IYX7 474 aa13.15□□□□□ -0.3
COL7A1-203ENST00000459756 BEND2Q8NDZ0 799 aa13.15□□□□□ -0.3
COL7A1-203ENST00000459756 OR5R1Q8NH85 324 aa13.15□□□□□ -0.3
COL7A1-203ENST00000459756 TSEN15Q8WW01 171 aaKnown RBP13.15□□□□□ -0.3
COL7A1-203ENST00000459756 RFT1Q96AA3 541 aa13.15□□□□□ -0.3
COL7A1-203ENST00000459756 SLITRK2Q9H156 845 aa13.15□□□□□ -0.3
COL7A1-203ENST00000459756 HMG20AQ9NP66 347 aa13.15□□□□□ -0.3
COL7A1-203ENST00000459756 IL36RNQ9UBH0 155 aa13.15□□□□□ -0.3
COL7A1-203ENST00000459756 VPREB3Q9UKI3 123 aa13.15□□□□□ -0.3
COL7A1-203ENST00000459756 DIMT1Q9UNQ2 313 aaKnown RBP13.15□□□□□ -0.3
COL7A1-203ENST00000459756 HSPE1-MOB4S4R3N1 261 aa13.15□□□□□ -0.3
COL7A1-203ENST00000459756 C17orf98A8MV24 154 aa13.14□□□□□ -0.31
COL7A1-203ENST00000459756 SULT1B1O43704 296 aa13.14□□□□□ -0.31
COL7A1-203ENST00000459756 KDM4BO94953 1096 aa13.14□□□□□ -0.31
COL7A1-203ENST00000459756 HCKP08631 526 aa13.14□□□□□ -0.31
COL7A1-203ENST00000459756 PRKACAP17612 351 aa13.14□□□□□ -0.31
COL7A1-203ENST00000459756 MYL12AP19105 171 aa13.14□□□□□ -0.31
COL7A1-203ENST00000459756 ETV1P50549 477 aa13.14□□□□□ -0.31
COL7A1-203ENST00000459756 DLX6P56179 175 aa13.14□□□□□ -0.31
COL7A1-203ENST00000459756 RELBQ01201 579 aa13.14□□□□□ -0.31
COL7A1-203ENST00000459756 TAF9Q16594 264 aa13.14□□□□□ -0.31
COL7A1-203ENST00000459756 RPL22L1Q6P5R6 122 aaKnown RBP13.14□□□□□ -0.31
COL7A1-203ENST00000459756 C17orf107Q6ZR85 190 aa13.14□□□□□ -0.31
COL7A1-203ENST00000459756 ZSCAN4Q8NAM6 433 aaPredicted RBP13.14□□□□□ -0.31
COL7A1-203ENST00000459756 BPIFB6Q8NFQ5 453 aa13.14□□□□□ -0.31
COL7A1-203ENST00000459756 PPP1R35Q8TAP8 253 aa13.14□□□□□ -0.31
COL7A1-203ENST00000459756 SPACA5Q96QH8 159 aa13.14□□□□□ -0.31
COL7A1-203ENST00000459756 PCDHGB5Q9Y5G0 923 aa13.14□□□□□ -0.31
COL7A1-203ENST00000459756 DSCAML1Q8TD84 2053 aa13.13□□□□□ -0.31
COL7A1-203ENST00000459756 IGKV1-12A0A0C4DH73 117 aa13.13□□□□□ -0.31
COL7A1-203ENST00000459756 hADV38S2A0JD32 116 aa13.13□□□□□ -0.31
COL7A1-203ENST00000459756 SH2D1BO14796 132 aa13.13□□□□□ -0.31
COL7A1-203ENST00000459756 XPNPEP2O43895 674 aa13.13□□□□□ -0.31
COL7A1-203ENST00000459756 IGKV1D-12P01611 117 aa13.13□□□□□ -0.31
COL7A1-203ENST00000459756 ZNF728P0DKX0 622 aa13.13□□□□□ -0.31
COL7A1-203ENST00000459756 GABRR1P24046 479 aa13.13□□□□□ -0.31
COL7A1-203ENST00000459756 DUSP1P28562 367 aa13.13□□□□□ -0.31
COL7A1-203ENST00000459756 HSPA13P48723 471 aa13.13□□□□□ -0.31
COL7A1-203ENST00000459756 GTF2A1P52655 376 aaPredicted RBP13.13□□□□□ -0.31
COL7A1-203ENST00000459756 EDDM3AQ14507 147 aa13.13□□□□□ -0.31
COL7A1-203ENST00000459756 CDK5R1Q15078 307 aa13.13□□□□□ -0.31
COL7A1-203ENST00000459756 KISS1Q15726 138 aa13.13□□□□□ -0.31
COL7A1-203ENST00000459756 GRK1Q15835 563 aa13.13□□□□□ -0.31
COL7A1-203ENST00000459756 OR52N4Q8NGI2 321 aa13.13□□□□□ -0.31
COL7A1-203ENST00000459756 OR5D18Q8NGL1 313 aa13.13□□□□□ -0.31
COL7A1-203ENST00000459756 GPR148Q8TDV2 347 aa13.13□□□□□ -0.31
COL7A1-203ENST00000459756 CPNE2Q96FN4 548 aaPredicted RBP13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms