RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 SLC25A28Q96A46 364 aa15.35■□□□□ 0.05
USP39-209ENST00000458268 C1orf147Q96MC9 270 aaPredicted RBP15.35■□□□□ 0.05
USP39-209ENST00000458268 ING3Q9NXR8 418 aa15.35■□□□□ 0.05
USP39-209ENST00000458268 PSORS1C1Q9UIG5 152 aa15.35■□□□□ 0.05
USP39-209ENST00000458268 FAM96BQ9Y3D0 163 aa15.35■□□□□ 0.05
USP39-209ENST00000458268 PTGES3LE9PB15 166 aa15.34■□□□□ 0.05
USP39-209ENST00000458268 RNASEK-C17orf49H0YIS7 233 aa15.34■□□□□ 0.05
USP39-209ENST00000458268 CCL3L1P16619 93 aa15.34■□□□□ 0.05
USP39-209ENST00000458268 C21orf33P30042 268 aaPredicted RBP15.34■□□□□ 0.05
USP39-209ENST00000458268 SLC9A3R2Q15599 337 aa15.34■□□□□ 0.05
USP39-209ENST00000458268 CCDC58Q4VC31 144 aa15.34■□□□□ 0.05
USP39-209ENST00000458268 TPRX1Q8N7U7 411 aa15.34■□□□□ 0.05
USP39-209ENST00000458268 OR52N1Q8NH53 320 aa15.34■□□□□ 0.05
USP39-209ENST00000458268 TMEM106AQ96A25 262 aa15.34■□□□□ 0.05
USP39-209ENST00000458268 SMIM19Q96E16 107 aa15.34■□□□□ 0.05
USP39-209ENST00000458268 CNOT2Q9NZN8 540 aaKnown RBP15.34■□□□□ 0.05
USP39-209ENST00000458268 ZNF281Q9Y2X9 895 aa15.34■□□□□ 0.05
USP39-209ENST00000458268 IGKV1-12A0A0C4DH73 117 aa15.33■□□□□ 0.04
USP39-209ENST00000458268 A0A1W2PPH5 198 aa15.33■□□□□ 0.04
USP39-209ENST00000458268 M0R1W7 72 aa15.33■□□□□ 0.04
USP39-209ENST00000458268 IGKV1D-12P01611 117 aa15.33■□□□□ 0.04
USP39-209ENST00000458268 COX7A1P24310 79 aa15.33■□□□□ 0.04
USP39-209ENST00000458268 PPP3R1P63098 170 aa15.33■□□□□ 0.04
USP39-209ENST00000458268 ZNF273Q14593 569 aa15.33■□□□□ 0.04
USP39-209ENST00000458268 KISS1Q15726 138 aa15.33■□□□□ 0.04
USP39-209ENST00000458268 GRK1Q15835 563 aa15.33■□□□□ 0.04
USP39-209ENST00000458268 ZNF782Q6ZMW2 699 aaPredicted RBP15.33■□□□□ 0.04
USP39-209ENST00000458268 PARP16Q8N5Y8 322 aa15.33■□□□□ 0.04
USP39-209ENST00000458268 ZSCAN4Q8NAM6 433 aaPredicted RBP15.33■□□□□ 0.04
USP39-209ENST00000458268 TNFAIP8L1Q8WVP5 186 aa15.33■□□□□ 0.04
USP39-209ENST00000458268 GHSRQ92847 366 aa15.33■□□□□ 0.04
USP39-209ENST00000458268 NR1H4Q96RI1 486 aaPredicted RBP15.33■□□□□ 0.04
USP39-209ENST00000458268 VCX3BQ9H321 246 aa15.33■□□□□ 0.04
USP39-209ENST00000458268 METTL8Q9H825 291 aaKnown RBP15.33■□□□□ 0.04
USP39-209ENST00000458268 EXOSC4Q9NPD3 245 aaKnown RBP15.33■□□□□ 0.04
USP39-209ENST00000458268 GLS2Q9UI32 602 aa15.33■□□□□ 0.04
USP39-209ENST00000458268 PCDHGB5Q9Y5G0 923 aa15.33■□□□□ 0.04
USP39-209ENST00000458268 A0A1W2PPK0 400 aa15.32■□□□□ 0.04
USP39-209ENST00000458268 TMEM82A0PJX8 343 aa15.32■□□□□ 0.04
USP39-209ENST00000458268 MEIOCA2RUB1 952 aa15.32■□□□□ 0.04
USP39-209ENST00000458268 K7N7A8 449 aa15.32■□□□□ 0.04
USP39-209ENST00000458268 NPFFO15130 113 aa15.32■□□□□ 0.04
USP39-209ENST00000458268 ZNF44P15621 663 aa15.32■□□□□ 0.04
USP39-209ENST00000458268 BPIFB3P59826 476 aa15.32■□□□□ 0.04
USP39-209ENST00000458268 ERVFRD-1P60508 538 aa15.32■□□□□ 0.04
USP39-209ENST00000458268 GUCA2AQ02747 115 aa15.32■□□□□ 0.04
USP39-209ENST00000458268 TMEM200BQ69YZ2 307 aa15.32■□□□□ 0.04
USP39-209ENST00000458268 IZUMO2Q6UXV1 221 aa15.32■□□□□ 0.04
USP39-209ENST00000458268 PIP4P2Q8N4L2 257 aa15.32■□□□□ 0.04
USP39-209ENST00000458268 OR10K1Q8NGX5 313 aa15.32■□□□□ 0.04
USP39-209ENST00000458268 HMG20AQ9NP66 347 aa15.32■□□□□ 0.04
USP39-209ENST00000458268 SCN3BQ9NY72 215 aa15.32■□□□□ 0.04
USP39-209ENST00000458268 ERGIC3Q9Y282 383 aa15.32■□□□□ 0.04
USP39-209ENST00000458268 OGG1O15527 345 aa15.31■□□□□ 0.04
USP39-209ENST00000458268 PAHP00439 452 aa15.31■□□□□ 0.04
USP39-209ENST00000458268 MT-ND2P03891 347 aa15.31■□□□□ 0.04
USP39-209ENST00000458268 MELTFP08582 738 aa15.31■□□□□ 0.04
USP39-209ENST00000458268 WNT4P56705 351 aa15.31■□□□□ 0.04
USP39-209ENST00000458268 C6orf141Q5SZD1 244 aa15.31■□□□□ 0.04
USP39-209ENST00000458268 DDI2Q5TDH0 399 aa15.31■□□□□ 0.04
USP39-209ENST00000458268 NCR3LG1Q68D85 454 aa15.31■□□□□ 0.04
USP39-209ENST00000458268 TRAPPC6BQ86SZ2 158 aa15.31■□□□□ 0.04
USP39-209ENST00000458268 OR52N4Q8NGI2 321 aa15.31■□□□□ 0.04
USP39-209ENST00000458268 FBLIM1Q8WUP2 373 aa15.31■□□□□ 0.04
USP39-209ENST00000458268 CPNE2Q96FN4 548 aaPredicted RBP15.31■□□□□ 0.04
USP39-209ENST00000458268 SNX22Q96L94 193 aa15.31■□□□□ 0.04
USP39-209ENST00000458268 FAM234AQ9H0X4 552 aa15.31■□□□□ 0.04
USP39-209ENST00000458268 PLCXD1Q9NUJ7 323 aa15.31■□□□□ 0.04
USP39-209ENST00000458268 STAB1Q9NY15 2570 aa15.31■□□□□ 0.04
USP39-209ENST00000458268 GABRPO00591 440 aa15.3■□□□□ 0.04
USP39-209ENST00000458268 HSPB6O14558 160 aa15.3■□□□□ 0.04
USP39-209ENST00000458268 SH2D1BO14796 132 aa15.3■□□□□ 0.04
USP39-209ENST00000458268 ZNF737O75373 536 aa15.3■□□□□ 0.04
USP39-209ENST00000458268 KDM4BO94953 1096 aa15.3■□□□□ 0.04
USP39-209ENST00000458268 RNASE1P07998 156 aaKnown RBP15.3■□□□□ 0.04
USP39-209ENST00000458268 CELP19835 753 aa15.3■□□□□ 0.04
USP39-209ENST00000458268 SAA4P35542 130 aa15.3■□□□□ 0.04
USP39-209ENST00000458268 TAS2R43P59537 309 aa15.3■□□□□ 0.04
USP39-209ENST00000458268 OR8H2Q8N162 312 aa15.3■□□□□ 0.04
USP39-209ENST00000458268 OR4S1Q8NGB4 309 aa15.3■□□□□ 0.04
USP39-209ENST00000458268 OR5D13Q8NGL4 314 aa15.3■□□□□ 0.04
USP39-209ENST00000458268 DSCAML1Q8TD84 2053 aa15.3■□□□□ 0.04
USP39-209ENST00000458268 SGCDQ92629 289 aa15.3■□□□□ 0.04
USP39-209ENST00000458268 OR14A2Q96R54 314 aa15.3■□□□□ 0.04
USP39-209ENST00000458268 PPA2Q9H2U2 334 aa15.3■□□□□ 0.04
USP39-209ENST00000458268 ZMAT3Q9HA38 289 aaKnown RBP15.3■□□□□ 0.04
USP39-209ENST00000458268 NOX4Q9NPH5 578 aa15.3■□□□□ 0.04
USP39-209ENST00000458268 ING4Q9UNL4 249 aa15.3■□□□□ 0.04
USP39-209ENST00000458268 hCG_1809904A0A1W2PP81 198 aa15.29■□□□□ 0.04
USP39-209ENST00000458268 A0A1W2PPE2 198 aa15.29■□□□□ 0.04
USP39-209ENST00000458268 A0A1W2PR64 198 aa15.29■□□□□ 0.04
USP39-209ENST00000458268 A0A1W2PRV1 198 aa15.29■□□□□ 0.04
USP39-209ENST00000458268 PSPNO60542 156 aa15.29■□□□□ 0.04
USP39-209ENST00000458268 HTR3BO95264 441 aa15.29■□□□□ 0.04
USP39-209ENST00000458268 OR2H2O95918 312 aa15.29■□□□□ 0.04
USP39-209ENST00000458268 IGHV4-59P01825 116 aa15.29■□□□□ 0.04
USP39-209ENST00000458268 CDK1P06493 297 aa15.29■□□□□ 0.04
USP39-209ENST00000458268 OMGP23515 440 aa15.29■□□□□ 0.04
USP39-209ENST00000458268 OR3A4PP47883 348 aa15.29■□□□□ 0.04
USP39-209ENST00000458268 ZP1P60852 638 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms