RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 NKX6-3A6NJ46 265 aa13.19□□□□□ -0.3
USP40-206ENST00000443711 TMEM14DPA8MWL7 114 aa13.19□□□□□ -0.3
USP40-206ENST00000443711 TNFRSF13BO14836 293 aaPredicted RBP13.19□□□□□ -0.3
USP40-206ENST00000443711 MPIG6BO95866 241 aa13.19□□□□□ -0.3
USP40-206ENST00000443711 ZNF182P17025 639 aaPredicted RBP13.19□□□□□ -0.3
USP40-206ENST00000443711 PRDX2P32119 198 aa13.19□□□□□ -0.3
USP40-206ENST00000443711 SOX6P35712 828 aa13.19□□□□□ -0.3
USP40-206ENST00000443711 SNU13P55769 128 aaKnown RBP13.19□□□□□ -0.3
USP40-206ENST00000443711 RBM11P57052 281 aaKnown RBP13.19□□□□□ -0.3
USP40-206ENST00000443711 SCAND1P57086 179 aa13.19□□□□□ -0.3
USP40-206ENST00000443711 IL13RA2Q14627 380 aa13.19□□□□□ -0.3
USP40-206ENST00000443711 OR10K2Q6IF99 312 aa13.19□□□□□ -0.3
USP40-206ENST00000443711 TMEM104Q8NE00 496 aa13.19□□□□□ -0.3
USP40-206ENST00000443711 DYNC2LI1Q8TCX1 351 aa13.19□□□□□ -0.3
USP40-206ENST00000443711 FAM46BQ96A09 425 aa13.19□□□□□ -0.3
USP40-206ENST00000443711 KCTD12Q96CX2 325 aaKnown RBP13.19□□□□□ -0.3
USP40-206ENST00000443711 POM121Q96HA1 1249 aa13.19□□□□□ -0.3
USP40-206ENST00000443711 MED30Q96HR3 178 aa13.19□□□□□ -0.3
USP40-206ENST00000443711 TMEM59Q9BXS4 323 aa13.19□□□□□ -0.3
USP40-206ENST00000443711 SELENOIQ9C0D9 397 aa13.19□□□□□ -0.3
USP40-206ENST00000443711 KCNK15Q9H427 330 aa13.19□□□□□ -0.3
USP40-206ENST00000443711 ZNF665Q9H7R5 613 aa13.19□□□□□ -0.3
USP40-206ENST00000443711 IL36RNQ9UBH0 155 aa13.19□□□□□ -0.3
USP40-206ENST00000443711 MIOXQ9UGB7 285 aa13.19□□□□□ -0.3
USP40-206ENST00000443711 OR5V1Q9UGF6 321 aa13.19□□□□□ -0.3
USP40-206ENST00000443711 RAB22AQ9UL26 194 aa13.19□□□□□ -0.3
USP40-206ENST00000443711 DOCK11Q5JSL3 2073 aa13.18□□□□□ -0.3
USP40-206ENST00000443711 TMEM272A0A1B0GTI8 110 aa13.18□□□□□ -0.3
USP40-206ENST00000443711 LDLRAD4O15165 306 aa13.18□□□□□ -0.3
USP40-206ENST00000443711 ADAM20O43506 726 aa13.18□□□□□ -0.3
USP40-206ENST00000443711 HAND1O96004 215 aa13.18□□□□□ -0.3
USP40-206ENST00000443711 CHRM2P08172 466 aa13.18□□□□□ -0.3
USP40-206ENST00000443711 SNRPBP14678 240 aaKnown RBP13.18□□□□□ -0.3
USP40-206ENST00000443711 CPT2P23786 658 aa13.18□□□□□ -0.3
USP40-206ENST00000443711 DUSP1P28562 367 aa13.18□□□□□ -0.3
USP40-206ENST00000443711 UNC119Q13432 240 aa13.18□□□□□ -0.3
USP40-206ENST00000443711 FAM189A2Q15884 450 aa13.18□□□□□ -0.3
USP40-206ENST00000443711 PIGYQ3MUY2 71 aa13.18□□□□□ -0.3
USP40-206ENST00000443711 LYPD2Q6UXB3 125 aa13.18□□□□□ -0.3
USP40-206ENST00000443711 ZNF788Q6ZQV5 615 aa13.18□□□□□ -0.3
USP40-206ENST00000443711 SLC36A1Q7Z2H8 476 aa13.18□□□□□ -0.3
USP40-206ENST00000443711 LINC00596Q86U02 117 aa13.18□□□□□ -0.3
USP40-206ENST00000443711 CLDND2Q8NHS1 167 aa13.18□□□□□ -0.3
USP40-206ENST00000443711 ACOT12Q8WYK0 555 aa13.18□□□□□ -0.3
USP40-206ENST00000443711 AP3S1Q92572 193 aa13.18□□□□□ -0.3
USP40-206ENST00000443711 PTX4Q96A99 478 aa13.18□□□□□ -0.3
USP40-206ENST00000443711 CCL13Q99616 98 aa13.18□□□□□ -0.3
USP40-206ENST00000443711 URM1Q9BTM9 101 aaKnown RBP13.18□□□□□ -0.3
USP40-206ENST00000443711 NARFLQ9H6Q4 476 aa13.18□□□□□ -0.3
USP40-206ENST00000443711 PATZ1Q9HBE1 687 aaKnown RBP13.18□□□□□ -0.3
USP40-206ENST00000443711 KAAG1Q9UBP8 84 aa13.18□□□□□ -0.3
USP40-206ENST00000443711 ZNF222Q9UK12 451 aa13.18□□□□□ -0.3
USP40-206ENST00000443711 FAM90A10PA6NDY2 464 aa13.17□□□□□ -0.3
USP40-206ENST00000443711 FAM90A18PA6NE21 464 aa13.17□□□□□ -0.3
USP40-206ENST00000443711 FAM90A16PA6NEW6 464 aa13.17□□□□□ -0.3
USP40-206ENST00000443711 FAM90A20PA6NIJ5 464 aa13.17□□□□□ -0.3
USP40-206ENST00000443711 FAM90A8PA6NJQ4 464 aa13.17□□□□□ -0.3
USP40-206ENST00000443711 FAM90A7PA6NKC0 464 aa13.17□□□□□ -0.3
USP40-206ENST00000443711 CEACAM18A8MTB9 384 aa13.17□□□□□ -0.3
USP40-206ENST00000443711 FAM90A22PA8MWA6 464 aa13.17□□□□□ -0.3
USP40-206ENST00000443711 FAM90A12PA8MX19 464 aa13.17□□□□□ -0.3
USP40-206ENST00000443711 FAM90A5PA8MXJ8 464 aa13.17□□□□□ -0.3
USP40-206ENST00000443711 FAM90A23PA8MXZ1 464 aa13.17□□□□□ -0.3
USP40-206ENST00000443711 H3BUI4 141 aa13.17□□□□□ -0.3
USP40-206ENST00000443711 DEGS1O15121 323 aa13.17□□□□□ -0.3
USP40-206ENST00000443711 PAHP00439 452 aa13.17□□□□□ -0.3
USP40-206ENST00000443711 FAM90A15PP0C7V4 464 aa13.17□□□□□ -0.3
USP40-206ENST00000443711 FAM90A13PP0C7W8 464 aa13.17□□□□□ -0.3
USP40-206ENST00000443711 FAM90A14PP0C7W9 464 aa13.17□□□□□ -0.3
USP40-206ENST00000443711 FAM90A24PP0C7X0 464 aa13.17□□□□□ -0.3
USP40-206ENST00000443711 RPS2P15880 293 aaKnown RBP13.17□□□□□ -0.3
USP40-206ENST00000443711 RAB6AP20340 208 aa13.17□□□□□ -0.3
USP40-206ENST00000443711 USF1P22415 310 aaPredicted RBP13.17□□□□□ -0.3
USP40-206ENST00000443711 CEBPDP49716 269 aaPredicted RBP13.17□□□□□ -0.3
USP40-206ENST00000443711 RPS27AP62979 156 aaKnown RBP13.17□□□□□ -0.3
USP40-206ENST00000443711 SCN1BQ07699 218 aa13.17□□□□□ -0.3
USP40-206ENST00000443711 DYNC1I2Q13409 638 aaKnown RBP13.17□□□□□ -0.3
USP40-206ENST00000443711 MPV17LQ2QL34 196 aa13.17□□□□□ -0.3
USP40-206ENST00000443711 FOXB2Q5VYV0 432 aa13.17□□□□□ -0.3
USP40-206ENST00000443711 NLRC3Q7RTR2 1065 aa13.17□□□□□ -0.3
USP40-206ENST00000443711 CD177Q8N6Q3 437 aa13.17□□□□□ -0.3
USP40-206ENST00000443711 WFDC11Q8NEX6 87 aa13.17□□□□□ -0.3
USP40-206ENST00000443711 LGALS14Q8TCE9 139 aa13.17□□□□□ -0.3
USP40-206ENST00000443711 NEIL1Q96FI4 390 aaPredicted RBP13.17□□□□□ -0.3
USP40-206ENST00000443711 SDSLQ96GA7 329 aa13.17□□□□□ -0.3
USP40-206ENST00000443711 Q96M66 194 aa13.17□□□□□ -0.3
USP40-206ENST00000443711 GAFA1Q96PS6 74 aa13.17□□□□□ -0.3
USP40-206ENST00000443711 REG4Q9BYZ8 158 aa13.17□□□□□ -0.3
USP40-206ENST00000443711 CCDC59Q9P031 241 aaKnown RBP13.17□□□□□ -0.3
USP40-206ENST00000443711 SPATA2Q9UM82 520 aa13.17□□□□□ -0.3
USP40-206ENST00000443711 ETV7Q9Y603 341 aa13.17□□□□□ -0.3
USP40-206ENST00000443711 MAP1AP78559 2803 aaPredicted RBP13.17□□□□□ -0.3
USP40-206ENST00000443711 MYO9AB2RTY4 2548 aa13.16□□□□□ -0.3
USP40-206ENST00000443711 IGHV4-61A0A0C4DH41 118 aa13.16□□□□□ -0.3
USP40-206ENST00000443711 GEMIN2O14893 280 aaKnown RBP13.16□□□□□ -0.3
USP40-206ENST00000443711 SIGLEC5O15389 551 aa13.16□□□□□ -0.3
USP40-206ENST00000443711 TMPRSS2O15393 492 aa13.16□□□□□ -0.3
USP40-206ENST00000443711 HEXAP06865 529 aa13.16□□□□□ -0.3
USP40-206ENST00000443711 WNT2P09544 360 aa13.16□□□□□ -0.3
USP40-206ENST00000443711 ZNF44P15621 663 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 79 ms