RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 GNB3P16520 340 aa14.48□□□□□ -0.09
CCDC28B-202ENST00000421922 PPOXP50336 477 aa14.48□□□□□ -0.09
CCDC28B-202ENST00000421922 ARFRP1Q13795 201 aa14.48□□□□□ -0.09
CCDC28B-202ENST00000421922 HACD4Q5VWC8 232 aa14.48□□□□□ -0.09
CCDC28B-202ENST00000421922 C11orf53Q8IXP5 236 aa14.48□□□□□ -0.09
CCDC28B-202ENST00000421922 GCDHQ92947 438 aaPredicted RBP14.48□□□□□ -0.09
CCDC28B-202ENST00000421922 SDHCQ99643 169 aaPredicted RBP14.48□□□□□ -0.09
CCDC28B-202ENST00000421922 ZMAT3Q9HA38 289 aaKnown RBP14.48□□□□□ -0.09
CCDC28B-202ENST00000421922 SCPEP1Q9HB40 452 aa14.48□□□□□ -0.09
CCDC28B-202ENST00000421922 SPACA1Q9HBV2 294 aa14.48□□□□□ -0.09
CCDC28B-202ENST00000421922 RASL12Q9NYN1 266 aa14.48□□□□□ -0.09
CCDC28B-202ENST00000421922 RNF7Q9UBF6 113 aa14.48□□□□□ -0.09
CCDC28B-202ENST00000421922 DNAJB11Q9UBS4 358 aa14.48□□□□□ -0.09
CCDC28B-202ENST00000421922 CACNA1DQ01668 2161 aa14.48□□□□□ -0.09
CCDC28B-202ENST00000421922 ADGRG4Q8IZF6 3080 aa14.48□□□□□ -0.09
CCDC28B-202ENST00000421922 A0A1W2PQ09 198 aa14.47□□□□□ -0.09
CCDC28B-202ENST00000421922 A1L4Q6 167 aa14.47□□□□□ -0.09
CCDC28B-202ENST00000421922 F8VVB4 439 aa14.47□□□□□ -0.09
CCDC28B-202ENST00000421922 F8VWA3 439 aa14.47□□□□□ -0.09
CCDC28B-202ENST00000421922 SULT1C2O00338 296 aa14.47□□□□□ -0.09
CCDC28B-202ENST00000421922 PDCD6O75340 191 aa14.47□□□□□ -0.09
CCDC28B-202ENST00000421922 ZNF44P15621 663 aa14.47□□□□□ -0.09
CCDC28B-202ENST00000421922 BAK1Q16611 211 aa14.47□□□□□ -0.09
CCDC28B-202ENST00000421922 PNLIPRP3Q17RR3 467 aa14.47□□□□□ -0.09
CCDC28B-202ENST00000421922 SWI5Q1ZZU3 235 aa14.47□□□□□ -0.09
CCDC28B-202ENST00000421922 MST1LQ2TV78 715 aa14.47□□□□□ -0.09
CCDC28B-202ENST00000421922 ZNF260Q3ZCT1 412 aa14.47□□□□□ -0.09
CCDC28B-202ENST00000421922 SPIN3Q5JUX0 258 aa14.47□□□□□ -0.09
CCDC28B-202ENST00000421922 C1orf87Q8N0U7 546 aa14.47□□□□□ -0.09
CCDC28B-202ENST00000421922 ZCCHC24Q8N2G6 241 aaKnown RBP14.47□□□□□ -0.09
CCDC28B-202ENST00000421922 NEK7Q8TDX7 302 aa14.47□□□□□ -0.09
CCDC28B-202ENST00000421922 PECRQ9BY49 303 aa14.47□□□□□ -0.09
CCDC28B-202ENST00000421922 RAB1BQ9H0U4 201 aa14.47□□□□□ -0.09
CCDC28B-202ENST00000421922 NPTNQ9Y639 398 aa14.47□□□□□ -0.09
CCDC28B-202ENST00000421922 SPTAN1Q13813 2472 aaKnown RBP14.46□□□□□ -0.09
CCDC28B-202ENST00000421922 ISPDA4D126 451 aa14.46□□□□□ -0.09
CCDC28B-202ENST00000421922 SERPINE3A8MV23 424 aa14.46□□□□□ -0.09
CCDC28B-202ENST00000421922 SH2D1BO14796 132 aa14.46□□□□□ -0.09
CCDC28B-202ENST00000421922 RBBP9O75884 186 aa14.46□□□□□ -0.09
CCDC28B-202ENST00000421922 LPLP06858 475 aa14.46□□□□□ -0.09
CCDC28B-202ENST00000421922 CD3GP09693 182 aa14.46□□□□□ -0.09
CCDC28B-202ENST00000421922 GSTT2BP0CG30 244 aa14.46□□□□□ -0.09
CCDC28B-202ENST00000421922 PTHLHP12272 177 aa14.46□□□□□ -0.09
CCDC28B-202ENST00000421922 FUT3P21217 361 aa14.46□□□□□ -0.09
CCDC28B-202ENST00000421922 AP3S2P59780 193 aa14.46□□□□□ -0.09
CCDC28B-202ENST00000421922 ACTBP60709 375 aa14.46□□□□□ -0.09
CCDC28B-202ENST00000421922 ERVK11-1P61568 191 aa14.46□□□□□ -0.09
CCDC28B-202ENST00000421922 ACTG1P63261 375 aa14.46□□□□□ -0.09
CCDC28B-202ENST00000421922 STEAP3Q658P3 488 aa14.46□□□□□ -0.09
CCDC28B-202ENST00000421922 OR52I2Q8NH67 350 aa14.46□□□□□ -0.09
CCDC28B-202ENST00000421922 GCM1Q9NP62 436 aa14.46□□□□□ -0.09
CCDC28B-202ENST00000421922 IFT46Q9NQC8 304 aa14.46□□□□□ -0.09
CCDC28B-202ENST00000421922 OR14J1Q9UGF5 321 aa14.46□□□□□ -0.09
CCDC28B-202ENST00000421922 ARFGEF3Q5TH69 2177 aa14.46□□□□□ -0.1
CCDC28B-202ENST00000421922 USP9YO00507 2555 aaPredicted RBP14.45□□□□□ -0.1
CCDC28B-202ENST00000421922 LINC00854A0A1B0GVQ3 168 aa14.45□□□□□ -0.1
CCDC28B-202ENST00000421922 SRRM5B3KS81 715 aa14.45□□□□□ -0.1
CCDC28B-202ENST00000421922 IFNL4K9M1U5 179 aa14.45□□□□□ -0.1
CCDC28B-202ENST00000421922 DEGS1O15121 323 aa14.45□□□□□ -0.1
CCDC28B-202ENST00000421922 CHATP28329 748 aa14.45□□□□□ -0.1
CCDC28B-202ENST00000421922 DUSP1P28562 367 aa14.45□□□□□ -0.1
CCDC28B-202ENST00000421922 CFHR2P36980 270 aa14.45□□□□□ -0.1
CCDC28B-202ENST00000421922 ACP7Q6ZNF0 438 aa14.45□□□□□ -0.1
CCDC28B-202ENST00000421922 C6orf201Q7Z4U5 140 aa14.45□□□□□ -0.1
CCDC28B-202ENST00000421922 TRAPPC6BQ86SZ2 158 aa14.45□□□□□ -0.1
CCDC28B-202ENST00000421922 LYSMD2Q8IV50 215 aa14.45□□□□□ -0.1
CCDC28B-202ENST00000421922 TOMM5Q8N4H5 51 aa14.45□□□□□ -0.1
CCDC28B-202ENST00000421922 Q8TCH9 128 aa14.45□□□□□ -0.1
CCDC28B-202ENST00000421922 YIPF5Q969M3 257 aa14.45□□□□□ -0.1
CCDC28B-202ENST00000421922 UNC79Q9P2D8 2635 aa14.45□□□□□ -0.1
CCDC28B-202ENST00000421922 IL36RNQ9UBH0 155 aa14.45□□□□□ -0.1
CCDC28B-202ENST00000421922 HSF4Q9ULV5 492 aa14.45□□□□□ -0.1
CCDC28B-202ENST00000421922 DYSFO75923 2080 aa14.45□□□□□ -0.1
CCDC28B-202ENST00000421922 MCRIP1C9JLW8 97 aa14.44□□□□□ -0.1
CCDC28B-202ENST00000421922 MFNGO00587 321 aa14.44□□□□□ -0.1
CCDC28B-202ENST00000421922 WNT9BO14905 357 aa14.44□□□□□ -0.1
CCDC28B-202ENST00000421922 ECDO95905 644 aaPredicted RBP14.44□□□□□ -0.1
CCDC28B-202ENST00000421922 KNG1P01042 644 aa14.44□□□□□ -0.1
CCDC28B-202ENST00000421922 GDNFP39905 211 aa14.44□□□□□ -0.1
CCDC28B-202ENST00000421922 TMEM50BP56557 158 aa14.44□□□□□ -0.1
CCDC28B-202ENST00000421922 GUCA2AQ02747 115 aa14.44□□□□□ -0.1
CCDC28B-202ENST00000421922 PDCD1Q15116 288 aa14.44□□□□□ -0.1
CCDC28B-202ENST00000421922 SPRNQ5BIV9 151 aa14.44□□□□□ -0.1
CCDC28B-202ENST00000421922 PLAC9Q5JTB6 97 aa14.44□□□□□ -0.1
CCDC28B-202ENST00000421922 FAM90A1Q86YD7 464 aa14.44□□□□□ -0.1
CCDC28B-202ENST00000421922 NUDCD2Q8WVJ2 157 aa14.44□□□□□ -0.1
CCDC28B-202ENST00000421922 COX4I2Q96KJ9 171 aa14.44□□□□□ -0.1
CCDC28B-202ENST00000421922 HES4Q9HCC6 221 aa14.44□□□□□ -0.1
CCDC28B-202ENST00000421922 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP14.44□□□□□ -0.1
CCDC28B-202ENST00000421922 TAS2R8Q9NYW2 309 aa14.44□□□□□ -0.1
CCDC28B-202ENST00000421922 TREM2Q9NZC2 230 aa14.44□□□□□ -0.1
CCDC28B-202ENST00000421922 LAMP3Q9UQV4 416 aa14.44□□□□□ -0.1
CCDC28B-202ENST00000421922 NBPF19A0A087WUL8 3843 aa14.44□□□□□ -0.1
CCDC28B-202ENST00000421922 MEIOCA2RUB1 952 aa14.43□□□□□ -0.1
CCDC28B-202ENST00000421922 MEIS3P1A6NDR6 274 aa14.43□□□□□ -0.1
CCDC28B-202ENST00000421922 CENPXA8MT69 81 aa14.43□□□□□ -0.1
CCDC28B-202ENST00000421922 FOXI3A8MTJ6 420 aaPredicted RBP14.43□□□□□ -0.1
CCDC28B-202ENST00000421922 HAND1O96004 215 aa14.43□□□□□ -0.1
CCDC28B-202ENST00000421922 CYB5R3P00387 301 aaPredicted RBP14.43□□□□□ -0.1
CCDC28B-202ENST00000421922 CSF1P09603 554 aa14.43□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms