RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 MIXL1Q9H2W2 232 aa15.17■□□□□ 0.02
SDC1-203ENST00000403076 MYOZ1Q9NP98 299 aaPredicted RBP15.17■□□□□ 0.02
SDC1-203ENST00000403076 DIABLOQ9NR28 239 aa15.17■□□□□ 0.02
SDC1-203ENST00000403076 OR2AT4A6NND4 320 aa15.16■□□□□ 0.02
SDC1-203ENST00000403076 SH2D1BO14796 132 aa15.16■□□□□ 0.02
SDC1-203ENST00000403076 OR7C1O76099 320 aaPredicted RBP15.16■□□□□ 0.02
SDC1-203ENST00000403076 KNG1P01042 644 aa15.16■□□□□ 0.02
SDC1-203ENST00000403076 ZNF44P15621 663 aa15.16■□□□□ 0.02
SDC1-203ENST00000403076 MUC1P15941 1255 aaPredicted RBP15.16■□□□□ 0.02
SDC1-203ENST00000403076 TALDO1P37837 337 aa15.16■□□□□ 0.02
SDC1-203ENST00000403076 GABRA2P47869 451 aa15.16■□□□□ 0.02
SDC1-203ENST00000403076 PDLIM4P50479 330 aa15.16■□□□□ 0.02
SDC1-203ENST00000403076 TMEM33P57088 247 aa15.16■□□□□ 0.02
SDC1-203ENST00000403076 IL13RA2Q14627 380 aa15.16■□□□□ 0.02
SDC1-203ENST00000403076 NHLRC3Q5JS37 347 aa15.16■□□□□ 0.02
SDC1-203ENST00000403076 LINC00299Q6ZSB3 139 aa15.16■□□□□ 0.02
SDC1-203ENST00000403076 LRRC28Q86X40 367 aaPredicted RBP15.16■□□□□ 0.02
SDC1-203ENST00000403076 ZNF525Q8N782 197 aa15.16■□□□□ 0.02
SDC1-203ENST00000403076 DTX3Q8N9I9 347 aa15.16■□□□□ 0.02
SDC1-203ENST00000403076 CHST4Q8NCG5 386 aa15.16■□□□□ 0.02
SDC1-203ENST00000403076 OR6Q1Q8NGQ2 317 aa15.16■□□□□ 0.02
SDC1-203ENST00000403076 TM2D1Q9BX74 207 aa15.16■□□□□ 0.02
SDC1-203ENST00000403076 GSX2Q9BZM3 304 aa15.16■□□□□ 0.02
SDC1-203ENST00000403076 BEX4Q9NWD9 120 aaPredicted RBP15.16■□□□□ 0.02
SDC1-203ENST00000403076 HECTD1Q9ULT8 2610 aa15.15■□□□□ 0.02
SDC1-203ENST00000403076 ISPDA4D126 451 aa15.15■□□□□ 0.02
SDC1-203ENST00000403076 RFPL4AA6NLU0 287 aa15.15■□□□□ 0.02
SDC1-203ENST00000403076 RFPL4AL1F8VTS6 287 aa15.15■□□□□ 0.02
SDC1-203ENST00000403076 DEGS1O15121 323 aa15.15■□□□□ 0.02
SDC1-203ENST00000403076 CHRM2P08172 466 aa15.15■□□□□ 0.02
SDC1-203ENST00000403076 PSG2P11465 335 aa15.15■□□□□ 0.02
SDC1-203ENST00000403076 TNFSF8P32971 234 aa15.15■□□□□ 0.02
SDC1-203ENST00000403076 BTG1P62324 171 aa15.15■□□□□ 0.02
SDC1-203ENST00000403076 ATAD3CQ5T2N8 411 aa15.15■□□□□ 0.02
SDC1-203ENST00000403076 AVPI1Q5T686 147 aa15.15■□□□□ 0.02
SDC1-203ENST00000403076 TEX36Q5VZQ5 186 aa15.15■□□□□ 0.02
SDC1-203ENST00000403076 LURAP1Q96LR2 239 aa15.15■□□□□ 0.02
SDC1-203ENST00000403076 NEDD4LQ96PU5 975 aa15.15■□□□□ 0.02
SDC1-203ENST00000403076 EXTL2Q9UBQ6 330 aa15.15■□□□□ 0.02
SDC1-203ENST00000403076 TANC2Q9HCD6 1990 aa15.15■□□□□ 0.02
SDC1-203ENST00000403076 ABCA12Q86UK0 2595 aa15.14■□□□□ 0.01
SDC1-203ENST00000403076 A0A0A6YYD4 124 aa15.14■□□□□ 0.01
SDC1-203ENST00000403076 SCGNO76038 276 aa15.14■□□□□ 0.01
SDC1-203ENST00000403076 HAND1O96004 215 aa15.14■□□□□ 0.01
SDC1-203ENST00000403076 GYPAP02724 150 aa15.14■□□□□ 0.01
SDC1-203ENST00000403076 PAX1P15863 534 aa15.14■□□□□ 0.01
SDC1-203ENST00000403076 BLVRBP30043 206 aaPredicted RBP15.14■□□□□ 0.01
SDC1-203ENST00000403076 PRDX2P32119 198 aa15.14■□□□□ 0.01
SDC1-203ENST00000403076 GPR6P46095 362 aaPredicted RBP15.14■□□□□ 0.01
SDC1-203ENST00000403076 CEBPDP49716 269 aaPredicted RBP15.14■□□□□ 0.01
SDC1-203ENST00000403076 MADCAM1Q13477 382 aa15.14■□□□□ 0.01
SDC1-203ENST00000403076 ZNF146Q15072 292 aa15.14■□□□□ 0.01
SDC1-203ENST00000403076 ZMYND11Q15326 602 aa15.14■□□□□ 0.01
SDC1-203ENST00000403076 KCNJ8Q15842 424 aa15.14■□□□□ 0.01
SDC1-203ENST00000403076 DEFB113Q30KQ7 82 aa15.14■□□□□ 0.01
SDC1-203ENST00000403076 NKAPLQ5M9Q1 402 aa15.14■□□□□ 0.01
SDC1-203ENST00000403076 RAB12Q6IQ22 244 aa15.14■□□□□ 0.01
SDC1-203ENST00000403076 LINC00596Q86U02 117 aa15.14■□□□□ 0.01
SDC1-203ENST00000403076 OR10R2Q8NGX6 335 aa15.14■□□□□ 0.01
SDC1-203ENST00000403076 POM121Q96HA1 1249 aa15.14■□□□□ 0.01
SDC1-203ENST00000403076 ARID1AO14497 2285 aa15.14■□□□□ 0.01
SDC1-203ENST00000403076 CRYBG3Q68DQ2 2970 aa15.14■□□□□ 0.01
SDC1-203ENST00000403076 FAM90A10PA6NDY2 464 aa15.13■□□□□ 0.01
SDC1-203ENST00000403076 FAM90A18PA6NE21 464 aa15.13■□□□□ 0.01
SDC1-203ENST00000403076 FAM90A16PA6NEW6 464 aa15.13■□□□□ 0.01
SDC1-203ENST00000403076 FAM90A20PA6NIJ5 464 aa15.13■□□□□ 0.01
SDC1-203ENST00000403076 FAM90A8PA6NJQ4 464 aa15.13■□□□□ 0.01
SDC1-203ENST00000403076 FAM90A7PA6NKC0 464 aa15.13■□□□□ 0.01
SDC1-203ENST00000403076 FAM90A22PA8MWA6 464 aa15.13■□□□□ 0.01
SDC1-203ENST00000403076 FAM90A12PA8MX19 464 aa15.13■□□□□ 0.01
SDC1-203ENST00000403076 FAM90A5PA8MXJ8 464 aa15.13■□□□□ 0.01
SDC1-203ENST00000403076 FAM90A23PA8MXZ1 464 aa15.13■□□□□ 0.01
SDC1-203ENST00000403076 H3BUI4 141 aa15.13■□□□□ 0.01
SDC1-203ENST00000403076 SIRPB1O00241 398 aa15.13■□□□□ 0.01
SDC1-203ENST00000403076 SOCS1O15524 211 aa15.13■□□□□ 0.01
SDC1-203ENST00000403076 TFF1P04155 84 aa15.13■□□□□ 0.01
SDC1-203ENST00000403076 FAM90A15PP0C7V4 464 aa15.13■□□□□ 0.01
SDC1-203ENST00000403076 FAM90A13PP0C7W8 464 aa15.13■□□□□ 0.01
SDC1-203ENST00000403076 FAM90A14PP0C7W9 464 aa15.13■□□□□ 0.01
SDC1-203ENST00000403076 FAM90A24PP0C7X0 464 aa15.13■□□□□ 0.01
SDC1-203ENST00000403076 CDK2P24941 298 aa15.13■□□□□ 0.01
SDC1-203ENST00000403076 MDH2P40926 338 aaKnown RBP15.13■□□□□ 0.01
SDC1-203ENST00000403076 MPV17LQ2QL34 196 aa15.13■□□□□ 0.01
SDC1-203ENST00000403076 CNIH2Q6PI25 160 aa15.13■□□□□ 0.01
SDC1-203ENST00000403076 CLEC2AQ6UVW9 174 aa15.13■□□□□ 0.01
SDC1-203ENST00000403076 BIVMQ86UB2 503 aa15.13■□□□□ 0.01
SDC1-203ENST00000403076 IZUMO1Q8IYV9 350 aa15.13■□□□□ 0.01
SDC1-203ENST00000403076 FAM89BQ8N5H3 189 aa15.13■□□□□ 0.01
SDC1-203ENST00000403076 TMEM165Q9HC07 324 aa15.13■□□□□ 0.01
SDC1-203ENST00000403076 MRPS7Q9Y2R9 242 aaKnown RBP15.13■□□□□ 0.01
SDC1-203ENST00000403076 IGKV1D-17A0A075B6S4 117 aa15.12■□□□□ 0.01
SDC1-203ENST00000403076 TRAV18A0A075B6X5 111 aa15.12■□□□□ 0.01
SDC1-203ENST00000403076 OR2H2O95918 312 aa15.12■□□□□ 0.01
SDC1-203ENST00000403076 MOGAT2Q3SYC2 334 aa15.12■□□□□ 0.01
SDC1-203ENST00000403076 TMEM69Q5SWH9 247 aa15.12■□□□□ 0.01
SDC1-203ENST00000403076 Q6ZTK2 550 aa15.12■□□□□ 0.01
SDC1-203ENST00000403076 OR4M1Q8NGD0 313 aa15.12■□□□□ 0.01
SDC1-203ENST00000403076 ANGPTL6Q8NI99 470 aa15.12■□□□□ 0.01
SDC1-203ENST00000403076 NEK7Q8TDX7 302 aa15.12■□□□□ 0.01
SDC1-203ENST00000403076 FAM168AQ92567 244 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms