RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 PPIAL4DF5H284 164 aa6.38□□□□□ -1.39
UPF2-203ENST00000397053 PPIAL4FP0DN26 164 aa6.38□□□□□ -1.39
UPF2-203ENST00000397053 ACVR1Q04771 509 aa6.38□□□□□ -1.39
UPF2-203ENST00000397053 LAMTOR1Q6IAA8 161 aa6.38□□□□□ -1.39
UPF2-203ENST00000397053 SLC35E4Q6ICL7 350 aa6.38□□□□□ -1.39
UPF2-203ENST00000397053 DLEU7Q6UYE1 221 aa6.38□□□□□ -1.39
UPF2-203ENST00000397053 Q6ZN92 141 aa6.38□□□□□ -1.39
UPF2-203ENST00000397053 FAM222BQ8WU58 562 aa6.38□□□□□ -1.39
UPF2-203ENST00000397053 PPP1R1CQ8WVI7 109 aa6.38□□□□□ -1.39
UPF2-203ENST00000397053 RASL10BQ96S79 203 aa6.38□□□□□ -1.39
UPF2-203ENST00000397053 SYT11Q9BT88 431 aa6.38□□□□□ -1.39
UPF2-203ENST00000397053 FAAP24Q9BTP7 215 aa6.38□□□□□ -1.39
UPF2-203ENST00000397053 MOB4Q9Y3A3 225 aa6.38□□□□□ -1.39
UPF2-203ENST00000397053 PPIAL4AQ9Y536 164 aa6.38□□□□□ -1.39
UPF2-203ENST00000397053 ARHGEF28Q8N1W1 1705 aaKnown RBP6.38□□□□□ -1.39
UPF2-203ENST00000397053 ZAR1LA6NP61 321 aa6.38□□□□□ -1.39
UPF2-203ENST00000397053 CTSVO60911 334 aa6.38□□□□□ -1.39
UPF2-203ENST00000397053 IGLV3-27P01718 113 aa6.38□□□□□ -1.39
UPF2-203ENST00000397053 G6PCP35575 357 aa6.38□□□□□ -1.39
UPF2-203ENST00000397053 PGFP49763 221 aa6.38□□□□□ -1.39
UPF2-203ENST00000397053 RPL31P62899 125 aaKnown RBP6.38□□□□□ -1.39
UPF2-203ENST00000397053 C19orf57Q0VDD7 668 aa6.38□□□□□ -1.39
UPF2-203ENST00000397053 DEGS2Q6QHC5 323 aa6.38□□□□□ -1.39
UPF2-203ENST00000397053 ZNF596Q8TC21 504 aa6.38□□□□□ -1.39
UPF2-203ENST00000397053 NRG4Q8WWG1 115 aa6.38□□□□□ -1.39
UPF2-203ENST00000397053 DIRC2Q96SL1 478 aa6.38□□□□□ -1.39
UPF2-203ENST00000397053 PDFQ9HBH1 243 aa6.38□□□□□ -1.39
UPF2-203ENST00000397053 SLC25A19Q9HC21 320 aa6.38□□□□□ -1.39
UPF2-203ENST00000397053 MSL2Q9HCI7 577 aa6.38□□□□□ -1.39
UPF2-203ENST00000397053 DOCK10Q96BY6 2186 aa6.38□□□□□ -1.39
UPF2-203ENST00000397053 ETHE1O95571 254 aa6.38□□□□□ -1.39
UPF2-203ENST00000397053 HLA-GP17693 338 aa6.38□□□□□ -1.39
UPF2-203ENST00000397053 CALCRP30988 508 aa6.38□□□□□ -1.39
UPF2-203ENST00000397053 DCTDP32321 178 aa6.38□□□□□ -1.39
UPF2-203ENST00000397053 ACAA2P42765 397 aaKnown RBP6.38□□□□□ -1.39
UPF2-203ENST00000397053 GALR1P47211 349 aa6.38□□□□□ -1.39
UPF2-203ENST00000397053 METAP1P53582 386 aa6.38□□□□□ -1.39
UPF2-203ENST00000397053 TAS2R60P59551 318 aa6.38□□□□□ -1.39
UPF2-203ENST00000397053 CCL8P80075 99 aa6.38□□□□□ -1.39
UPF2-203ENST00000397053 LIAT1Q6ZQX7 453 aa6.38□□□□□ -1.39
UPF2-203ENST00000397053 SH2D5Q6ZV89 423 aa6.38□□□□□ -1.39
UPF2-203ENST00000397053 FAM219AQ8IW50 185 aa6.38□□□□□ -1.39
UPF2-203ENST00000397053 OR5A2Q8NGI9 324 aa6.38□□□□□ -1.39
UPF2-203ENST00000397053 LILRB4Q8NHJ6 448 aa6.38□□□□□ -1.39
UPF2-203ENST00000397053 PERPQ96FX8 193 aa6.38□□□□□ -1.39
UPF2-203ENST00000397053 CA10Q9NS85 328 aa6.38□□□□□ -1.39
UPF2-203ENST00000397053 A0A1B0GTH9 108 aa6.38□□□□□ -1.39
UPF2-203ENST00000397053 NPIPB6E9PJ23 425 aa6.38□□□□□ -1.39
UPF2-203ENST00000397053 RHBDL1O75783 438 aa6.38□□□□□ -1.39
UPF2-203ENST00000397053 FTH1P19P0C7X4 201 aa6.38□□□□□ -1.39
UPF2-203ENST00000397053 COL8A1P27658 744 aa6.38□□□□□ -1.39
UPF2-203ENST00000397053 SRSF9Q13242 221 aaKnown RBP eCLIP6.38□□□□□ -1.39
UPF2-203ENST00000397053 CLPPQ16740 277 aaPredicted RBP6.38□□□□□ -1.39
UPF2-203ENST00000397053 SLC25A42Q86VD7 318 aa6.38□□□□□ -1.39
UPF2-203ENST00000397053 TP53I13Q8NBR0 393 aaPredicted RBP6.38□□□□□ -1.39
UPF2-203ENST00000397053 ARHGAP5-AS1Q96IT6 56 aa6.38□□□□□ -1.39
UPF2-203ENST00000397053 DERL3Q96Q80 235 aa6.38□□□□□ -1.39
UPF2-203ENST00000397053 TUBA4BQ9H853 241 aa6.38□□□□□ -1.39
UPF2-203ENST00000397053 SMAD7O15105 426 aaKnown RBP6.37□□□□□ -1.39
UPF2-203ENST00000397053 SS18L1O75177 396 aaPredicted RBP6.37□□□□□ -1.39
UPF2-203ENST00000397053 WNT1P04628 370 aa6.37□□□□□ -1.39
UPF2-203ENST00000397053 HOXD4P09016 255 aaPredicted RBP6.37□□□□□ -1.39
UPF2-203ENST00000397053 NQO2P16083 231 aa6.37□□□□□ -1.39
UPF2-203ENST00000397053 SPINK2P20155 84 aa6.37□□□□□ -1.39
UPF2-203ENST00000397053 MEOX2P50222 304 aa6.37□□□□□ -1.39
UPF2-203ENST00000397053 RAB9AP51151 201 aa6.37□□□□□ -1.39
UPF2-203ENST00000397053 ERVFRD-1P60508 538 aa6.37□□□□□ -1.39
UPF2-203ENST00000397053 NUBPLQ8TB37 319 aa6.37□□□□□ -1.39
UPF2-203ENST00000397053 PRDM7Q9NQW5 492 aa6.37□□□□□ -1.39
UPF2-203ENST00000397053 PARP11Q9NR21 331 aa6.37□□□□□ -1.39
UPF2-203ENST00000397053 MAP1LC3B2A6NCE7 125 aa6.37□□□□□ -1.39
UPF2-203ENST00000397053 KIAA1324LA8MWY0 1029 aaPredicted RBP6.37□□□□□ -1.39
UPF2-203ENST00000397053 M0R3E3 92 aa6.37□□□□□ -1.39
UPF2-203ENST00000397053 PHOX2AO14813 284 aa6.37□□□□□ -1.39
UPF2-203ENST00000397053 PNPP00491 289 aa6.37□□□□□ -1.39
UPF2-203ENST00000397053 APELAP0DMC3 54 aa6.37□□□□□ -1.39
UPF2-203ENST00000397053 GP2P55259 537 aaKnown RBP6.37□□□□□ -1.39
UPF2-203ENST00000397053 KRTCAP3Q53RY4 240 aa6.37□□□□□ -1.39
UPF2-203ENST00000397053 SPANXN1Q5VSR9 72 aa6.37□□□□□ -1.39
UPF2-203ENST00000397053 MAMSTRQ6ZN01 415 aa6.37□□□□□ -1.39
UPF2-203ENST00000397053 OR10A7Q8NGE5 316 aa6.37□□□□□ -1.39
UPF2-203ENST00000397053 TMEM37Q8WXS4 190 aa6.37□□□□□ -1.39
UPF2-203ENST00000397053 R3HDM4Q96D70 268 aa6.37□□□□□ -1.39
UPF2-203ENST00000397053 VSTM2LQ96N03 204 aa6.37□□□□□ -1.39
UPF2-203ENST00000397053 MAP1LC3BQ9GZQ8 125 aa6.37□□□□□ -1.39
UPF2-203ENST00000397053 NTN4Q9HB63 628 aa6.37□□□□□ -1.39
UPF2-203ENST00000397053 GPR27Q9NS67 375 aa6.37□□□□□ -1.39
UPF2-203ENST00000397053 FAM53CQ9NYF3 392 aa6.37□□□□□ -1.39
UPF2-203ENST00000397053 COL6A6A6NMZ7 2263 aa6.37□□□□□ -1.39
UPF2-203ENST00000397053 A0A0A6YYD5 115 aa6.37□□□□□ -1.39
UPF2-203ENST00000397053 TRBV5-4A0A0C4DH59 114 aa6.37□□□□□ -1.39
UPF2-203ENST00000397053 A1L4Q6 167 aa6.37□□□□□ -1.39
UPF2-203ENST00000397053 TTRP02766 147 aa6.37□□□□□ -1.39
UPF2-203ENST00000397053 PRSS12P56730 875 aa6.37□□□□□ -1.39
UPF2-203ENST00000397053 SSBP1Q04837 148 aaKnown RBP6.37□□□□□ -1.39
UPF2-203ENST00000397053 ISXQ2M1V0 245 aa6.37□□□□□ -1.39
UPF2-203ENST00000397053 LRRC75BQ2VPJ9 315 aa6.37□□□□□ -1.39
UPF2-203ENST00000397053 C6orf201Q7Z4U5 140 aa6.37□□□□□ -1.39
UPF2-203ENST00000397053 OR4C16Q8NGL9 310 aa6.37□□□□□ -1.39
UPF2-203ENST00000397053 IL22RA2Q969J5 263 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms