RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 GLI4P10075 376 aa12.91□□□□□ -0.34
GPC3-202ENST00000394299 HLA-GP17693 338 aa12.91□□□□□ -0.34
GPC3-202ENST00000394299 FUT3P21217 361 aa12.91□□□□□ -0.34
GPC3-202ENST00000394299 PTGER4P35408 488 aa12.91□□□□□ -0.34
GPC3-202ENST00000394299 RBMXP38159 391 aaKnown RBP12.91□□□□□ -0.34
GPC3-202ENST00000394299 TAS2R31P59538 309 aa12.91□□□□□ -0.34
GPC3-202ENST00000394299 FXYD4P59646 89 aa12.91□□□□□ -0.34
GPC3-202ENST00000394299 PPA1Q15181 289 aa12.91□□□□□ -0.34
GPC3-202ENST00000394299 C11orf87Q6NUJ2 197 aa12.91□□□□□ -0.34
GPC3-202ENST00000394299 OR5P3Q8WZ94 311 aa12.91□□□□□ -0.34
GPC3-202ENST00000394299 MRPS24Q96EL2 167 aaKnown RBP12.91□□□□□ -0.34
GPC3-202ENST00000394299 WDR13Q9H1Z4 485 aa12.91□□□□□ -0.34
GPC3-202ENST00000394299 ESPL1Q14674 2120 aa12.9□□□□□ -0.34
GPC3-202ENST00000394299 POM121CA8CG34 1229 aa12.9□□□□□ -0.34
GPC3-202ENST00000394299 AQP7O14520 342 aa12.9□□□□□ -0.34
GPC3-202ENST00000394299 KLK10O43240 276 aa12.9□□□□□ -0.34
GPC3-202ENST00000394299 CEACAM4O75871 244 aa12.9□□□□□ -0.34
GPC3-202ENST00000394299 UBE2NP61088 152 aaKnown RBP12.9□□□□□ -0.34
GPC3-202ENST00000394299 SRSF4Q08170 494 aaKnown RBP12.9□□□□□ -0.34
GPC3-202ENST00000394299 GUSBP1Q15486 140 aa12.9□□□□□ -0.34
GPC3-202ENST00000394299 GABRA6Q16445 453 aa12.9□□□□□ -0.34
GPC3-202ENST00000394299 RTL6Q6ICC9 239 aa12.9□□□□□ -0.34
GPC3-202ENST00000394299 HIST1H2AAQ96QV6 131 aa12.9□□□□□ -0.34
GPC3-202ENST00000394299 DKK4Q9UBT3 224 aa12.9□□□□□ -0.34
GPC3-202ENST00000394299 MAB21L2Q9Y586 359 aa12.9□□□□□ -0.34
GPC3-202ENST00000394299 GTF3C1Q12789 2109 aa12.9□□□□□ -0.34
GPC3-202ENST00000394299 ANKRD30BLA7E2S9 258 aa12.89□□□□□ -0.35
GPC3-202ENST00000394299 SELEP16581 610 aa12.89□□□□□ -0.35
GPC3-202ENST00000394299 RTP5Q14D33 572 aa12.89□□□□□ -0.35
GPC3-202ENST00000394299 ASCL5Q7RTU5 278 aa12.89□□□□□ -0.35
GPC3-202ENST00000394299 OR5A2Q8NGI9 324 aa12.89□□□□□ -0.35
GPC3-202ENST00000394299 NANOS1Q8WY41 292 aaKnown RBP12.89□□□□□ -0.35
GPC3-202ENST00000394299 OR10C1Q96KK4 312 aa12.89□□□□□ -0.35
GPC3-202ENST00000394299 DMRTA2Q96SC8 542 aa12.89□□□□□ -0.35
GPC3-202ENST00000394299 COMMD9Q9P000 198 aa12.89□□□□□ -0.35
GPC3-202ENST00000394299 NBEAQ8NFP9 2946 aa12.89□□□□□ -0.35
GPC3-202ENST00000394299 SPDEFO95238 335 aa12.89□□□□□ -0.35
GPC3-202ENST00000394299 HOXB5P09067 269 aa12.89□□□□□ -0.35
GPC3-202ENST00000394299 TBC1D28Q2M2D7 210 aa12.89□□□□□ -0.35
GPC3-202ENST00000394299 IGSF11Q5DX21 431 aa12.89□□□□□ -0.35
GPC3-202ENST00000394299 LPCAT3Q6P1A2 487 aa12.89□□□□□ -0.35
GPC3-202ENST00000394299 ZADH2Q8N4Q0 377 aa12.89□□□□□ -0.35
GPC3-202ENST00000394299 EXTL1Q92935 676 aa12.89□□□□□ -0.35
GPC3-202ENST00000394299 RP1L1Q8IWN7 2480 aaPredicted RBP12.88□□□□□ -0.35
GPC3-202ENST00000394299 RRP8O43159 456 aaKnown RBP12.88□□□□□ -0.35
GPC3-202ENST00000394299 SMPD2O60906 423 aa12.88□□□□□ -0.35
GPC3-202ENST00000394299 RPA2P15927 270 aa12.88□□□□□ -0.35
GPC3-202ENST00000394299 PRKACAP17612 351 aa12.88□□□□□ -0.35
GPC3-202ENST00000394299 CALCRP30988 508 aa12.88□□□□□ -0.35
GPC3-202ENST00000394299 FCGR2CP31995 323 aa12.88□□□□□ -0.35
GPC3-202ENST00000394299 HOXA4Q00056 320 aaPredicted RBP12.88□□□□□ -0.35
GPC3-202ENST00000394299 ZNF169Q14929 603 aaPredicted RBP12.88□□□□□ -0.35
GPC3-202ENST00000394299 SP6Q3SY56 376 aa12.88□□□□□ -0.35
GPC3-202ENST00000394299 GSG1LQ6UXU4 331 aa12.88□□□□□ -0.35
GPC3-202ENST00000394299 Q6ZT83 130 aa12.88□□□□□ -0.35
GPC3-202ENST00000394299 RPRMLQ8N4K4 120 aa12.88□□□□□ -0.35
GPC3-202ENST00000394299 SARAFQ96BY9 339 aa12.88□□□□□ -0.35
GPC3-202ENST00000394299 OPN3Q9H1Y3 402 aaPredicted RBP12.88□□□□□ -0.35
GPC3-202ENST00000394299 NECAP2Q9NVZ3 263 aa12.88□□□□□ -0.35
GPC3-202ENST00000394299 MBD2Q9UBB5 411 aa12.88□□□□□ -0.35
GPC3-202ENST00000394299 EDARQ9UNE0 448 aa12.88□□□□□ -0.35
GPC3-202ENST00000394299 INTS1Q8N201 2190 aaKnown RBP12.88□□□□□ -0.35
GPC3-202ENST00000394299 RNF222A6NCQ9 220 aa12.88□□□□□ -0.35
GPC3-202ENST00000394299 TRAPPC2LH3BP13 241 aa12.88□□□□□ -0.35
GPC3-202ENST00000394299 TEX46H3BTG2 121 aa12.88□□□□□ -0.35
GPC3-202ENST00000394299 RP2O75695 350 aa12.88□□□□□ -0.35
GPC3-202ENST00000394299 DTYMKP23919 212 aa12.88□□□□□ -0.35
GPC3-202ENST00000394299 FGF12P61328 243 aa12.88□□□□□ -0.35
GPC3-202ENST00000394299 TGFBR3Q03167 851 aa12.88□□□□□ -0.35
GPC3-202ENST00000394299 NHLRC3Q5JS37 347 aa12.88□□□□□ -0.35
GPC3-202ENST00000394299 SEM1Q6ZVN7 128 aa12.88□□□□□ -0.35
GPC3-202ENST00000394299 ZNF610Q8N9Z0 462 aa12.88□□□□□ -0.35
GPC3-202ENST00000394299 Q8NFD4 153 aa12.88□□□□□ -0.35
GPC3-202ENST00000394299 COQ8AQ8NI60 647 aa12.88□□□□□ -0.35
GPC3-202ENST00000394299 SCGB3A2Q96PL1 93 aa12.88□□□□□ -0.35
GPC3-202ENST00000394299 CHMP1AQ9HD42 196 aaPredicted RBP12.88□□□□□ -0.35
GPC3-202ENST00000394299 TNFSF18Q9UNG2 199 aa12.88□□□□□ -0.35
GPC3-202ENST00000394299 H0YIZ8 118 aa12.87□□□□□ -0.35
GPC3-202ENST00000394299 HS3ST1O14792 307 aa12.87□□□□□ -0.35
GPC3-202ENST00000394299 PPP1CBP62140 327 aa12.87□□□□□ -0.35
GPC3-202ENST00000394299 IKZF1Q13422 519 aa12.87□□□□□ -0.35
GPC3-202ENST00000394299 ACSF3Q4G176 576 aaPredicted RBP12.87□□□□□ -0.35
GPC3-202ENST00000394299 DHRS11Q6UWP2 260 aa12.87□□□□□ -0.35
GPC3-202ENST00000394299 WDR86Q86TI4 376 aa12.87□□□□□ -0.35
GPC3-202ENST00000394299 MKXQ8IYA7 352 aa12.87□□□□□ -0.35
GPC3-202ENST00000394299 WDR31Q8NA23 367 aa12.87□□□□□ -0.35
GPC3-202ENST00000394299 OR5L1Q8NGL2 311 aa12.87□□□□□ -0.35
GPC3-202ENST00000394299 SLC25A40Q8TBP6 338 aa12.87□□□□□ -0.35
GPC3-202ENST00000394299 VRK1Q99986 396 aaPredicted RBP12.87□□□□□ -0.35
GPC3-202ENST00000394299 GSX2Q9BZM3 304 aa12.87□□□□□ -0.35
GPC3-202ENST00000394299 METTL8Q9H825 291 aaKnown RBP12.87□□□□□ -0.35
GPC3-202ENST00000394299 PCDHB16Q9NRJ7 776 aa12.87□□□□□ -0.35
GPC3-202ENST00000394299 PLSCR2Q9NRY7 297 aa12.87□□□□□ -0.35
GPC3-202ENST00000394299 GLRX2Q9NS18 164 aa12.87□□□□□ -0.35
GPC3-202ENST00000394299 C14orf166Q9Y224 244 aaKnown RBP12.87□□□□□ -0.35
GPC3-202ENST00000394299 ANKRD11Q6UB99 2663 aaPredicted RBP12.87□□□□□ -0.35
GPC3-202ENST00000394299 H0YL77 283 aa12.87□□□□□ -0.35
GPC3-202ENST00000394299 CRHP06850 196 aa12.87□□□□□ -0.35
GPC3-202ENST00000394299 PHLDA2Q53GA4 152 aa12.87□□□□□ -0.35
GPC3-202ENST00000394299 ALKBH2Q6NS38 261 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms