RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 MUC20Q8N307 709 aaPredicted RBP8.71□□□□□ -1.02
VPS53-202ENST00000389040 GVQW1Q8N7I0 195 aa8.71□□□□□ -1.02
VPS53-202ENST00000389040 OR2AE1Q8NHA4 323 aa8.71□□□□□ -1.02
VPS53-202ENST00000389040 TNFAIP8L1Q8WVP5 186 aa8.71□□□□□ -1.02
VPS53-202ENST00000389040 SLC6A7Q99884 636 aa8.71□□□□□ -1.02
VPS53-202ENST00000389040 PIPOXQ9P0Z9 390 aa8.71□□□□□ -1.02
VPS53-202ENST00000389040 GPR160Q9UJ42 338 aa8.71□□□□□ -1.02
VPS53-202ENST00000389040 ZNF391Q9UJN7 358 aa8.71□□□□□ -1.02
VPS53-202ENST00000389040 PLEKHA6Q9Y2H5 1048 aa8.71□□□□□ -1.02
VPS53-202ENST00000389040 KCNK7Q9Y2U2 307 aa8.71□□□□□ -1.02
VPS53-202ENST00000389040 ATP23Q9Y6H3 246 aa8.71□□□□□ -1.02
VPS53-202ENST00000389040 B9A039 149 aa8.7□□□□□ -1.02
VPS53-202ENST00000389040 E7EQL1 145 aa8.7□□□□□ -1.02
VPS53-202ENST00000389040 CSN2P05814 226 aa8.7□□□□□ -1.02
VPS53-202ENST00000389040 DANCRP0C864 163 aa8.7□□□□□ -1.02
VPS53-202ENST00000389040 ZNF250P15622 560 aa8.7□□□□□ -1.02
VPS53-202ENST00000389040 TBPP20226 339 aa8.7□□□□□ -1.02
VPS53-202ENST00000389040 ACKR3P25106 362 aa8.7□□□□□ -1.02
VPS53-202ENST00000389040 SERPINF1P36955 418 aa8.7□□□□□ -1.02
VPS53-202ENST00000389040 RAP2BP61225 183 aa8.7□□□□□ -1.02
VPS53-202ENST00000389040 RPS27AP62979 156 aaKnown RBP8.7□□□□□ -1.02
VPS53-202ENST00000389040 RIPPLY1Q0D2K3 151 aa8.7□□□□□ -1.02
VPS53-202ENST00000389040 NKPD1Q17RQ9 610 aa8.7□□□□□ -1.02
VPS53-202ENST00000389040 PNLIPRP3Q17RR3 467 aa8.7□□□□□ -1.02
VPS53-202ENST00000389040 OR52W1Q6IF63 320 aa8.7□□□□□ -1.02
VPS53-202ENST00000389040 C1QL2Q7Z5L3 287 aa8.7□□□□□ -1.02
VPS53-202ENST00000389040 MYPOPQ86VE0 399 aaPredicted RBP8.7□□□□□ -1.02
VPS53-202ENST00000389040 FAM89BQ8N5H3 189 aa8.7□□□□□ -1.02
VPS53-202ENST00000389040 OR13C8Q8NGS7 320 aa8.7□□□□□ -1.02
VPS53-202ENST00000389040 TMEM171Q8WVE6 324 aa8.7□□□□□ -1.02
VPS53-202ENST00000389040 APOBEC3DQ96AK3 386 aaPredicted RBP8.7□□□□□ -1.02
VPS53-202ENST00000389040 SPSB1Q96BD6 273 aa8.7□□□□□ -1.02
VPS53-202ENST00000389040 MBD6Q96DN6 1003 aa8.7□□□□□ -1.02
VPS53-202ENST00000389040 C1QTNF5Q9BXJ0 243 aa8.7□□□□□ -1.02
VPS53-202ENST00000389040 CHST6Q9GZX3 395 aa8.7□□□□□ -1.02
VPS53-202ENST00000389040 RGCCQ9H4X1 137 aa8.7□□□□□ -1.02
VPS53-202ENST00000389040 OPA3Q9H6K4 179 aa8.7□□□□□ -1.02
VPS53-202ENST00000389040 MYOZ1Q9NP98 299 aaPredicted RBP8.7□□□□□ -1.02
VPS53-202ENST00000389040 CELSR2Q9HCU4 2923 aa8.7□□□□□ -1.02
VPS53-202ENST00000389040 PKDREJQ9NTG1 2253 aa8.7□□□□□ -1.02
VPS53-202ENST00000389040 MFNGO00587 321 aa8.7□□□□□ -1.02
VPS53-202ENST00000389040 OR2A4O95047 310 aa8.7□□□□□ -1.02
VPS53-202ENST00000389040 PLAUP00749 431 aa8.7□□□□□ -1.02
VPS53-202ENST00000389040 OR4E1P0C645 316 aa8.7□□□□□ -1.02
VPS53-202ENST00000389040 PAX1P15863 534 aa8.7□□□□□ -1.02
VPS53-202ENST00000389040 MGMTP16455 207 aa8.7□□□□□ -1.02
VPS53-202ENST00000389040 S100A1P23297 94 aa8.7□□□□□ -1.02
VPS53-202ENST00000389040 HRH1P35367 487 aa8.7□□□□□ -1.02
VPS53-202ENST00000389040 FABP6P51161 128 aa8.7□□□□□ -1.02
VPS53-202ENST00000389040 ATPAF1Q5TC12 328 aaPredicted RBP8.7□□□□□ -1.02
VPS53-202ENST00000389040 MBNL2Q5VZF2 373 aaKnown RBP8.7□□□□□ -1.02
VPS53-202ENST00000389040 HIST2H2BCQ6DN03 193 aa8.7□□□□□ -1.02
VPS53-202ENST00000389040 RGS7BPQ6MZT1 257 aaPredicted RBP8.7□□□□□ -1.02
VPS53-202ENST00000389040 ZNF767PQ75MW2 155 aa8.7□□□□□ -1.02
VPS53-202ENST00000389040 TMED4Q7Z7H5 227 aa8.7□□□□□ -1.02
VPS53-202ENST00000389040 MUC15Q8N387 334 aa8.7□□□□□ -1.02
VPS53-202ENST00000389040 OR2AK2Q8NG84 335 aa8.7□□□□□ -1.02
VPS53-202ENST00000389040 OR51T1Q8NGJ9 327 aa8.7□□□□□ -1.02
VPS53-202ENST00000389040 ARHGAP5-AS1Q96IT6 56 aa8.7□□□□□ -1.02
VPS53-202ENST00000389040 LURAP1Q96LR2 239 aa8.7□□□□□ -1.02
VPS53-202ENST00000389040 OR2A7Q96R45 310 aa8.7□□□□□ -1.02
VPS53-202ENST00000389040 S100A13Q99584 98 aa8.7□□□□□ -1.02
VPS53-202ENST00000389040 GPR173Q9NS66 373 aa8.7□□□□□ -1.02
VPS53-202ENST00000389040 CBLN4Q9NTU7 201 aa8.7□□□□□ -1.02
VPS53-202ENST00000389040 SLC23A1Q9UHI7 598 aa8.7□□□□□ -1.02
VPS53-202ENST00000389040 ANAPC10Q9UM13 185 aa8.7□□□□□ -1.02
VPS53-202ENST00000389040 HECTD1Q9ULT8 2610 aa8.7□□□□□ -1.02
VPS53-202ENST00000389040 CRYBG3Q68DQ2 2970 aa8.69□□□□□ -1.02
VPS53-202ENST00000389040 UNC79Q9P2D8 2635 aa8.69□□□□□ -1.02
VPS53-202ENST00000389040 A0A1W2PPR1 153 aa8.69□□□□□ -1.02
VPS53-202ENST00000389040 FOXI3A8MTJ6 420 aaPredicted RBP8.69□□□□□ -1.02
VPS53-202ENST00000389040 SMPD2O60906 423 aa8.69□□□□□ -1.02
VPS53-202ENST00000389040 TSC22D2O75157 780 aa8.69□□□□□ -1.02
VPS53-202ENST00000389040 SERPINA2P20848 420 aa8.69□□□□□ -1.02
VPS53-202ENST00000389040 CCNOP22674 350 aa8.69□□□□□ -1.02
VPS53-202ENST00000389040 MTCP1P56278 107 aa8.69□□□□□ -1.02
VPS53-202ENST00000389040 TMEM50BP56557 158 aa8.69□□□□□ -1.02
VPS53-202ENST00000389040 UBE2MP61081 183 aaKnown RBP8.69□□□□□ -1.02
VPS53-202ENST00000389040 CNN3Q15417 329 aaKnown RBP8.69□□□□□ -1.02
VPS53-202ENST00000389040 ZNF718Q3SXZ3 478 aa8.69□□□□□ -1.02
VPS53-202ENST00000389040 LGALSLQ3ZCW2 172 aaPredicted RBP8.69□□□□□ -1.02
VPS53-202ENST00000389040 IGFBPL1Q8WX77 278 aa8.69□□□□□ -1.02
VPS53-202ENST00000389040 SNAPC3Q92966 411 aa8.69□□□□□ -1.02
VPS53-202ENST00000389040 MRPL24Q96A35 216 aaKnown RBP8.69□□□□□ -1.02
VPS53-202ENST00000389040 CPNE2Q96FN4 548 aaPredicted RBP8.69□□□□□ -1.02
VPS53-202ENST00000389040 IGLV3-9A0A075B6K5 115 aa8.68□□□□□ -1.02
VPS53-202ENST00000389040 H3BUI4 141 aa8.68□□□□□ -1.02
VPS53-202ENST00000389040 GOSR2O14653 212 aa8.68□□□□□ -1.02
VPS53-202ENST00000389040 OR4A8P0C604 315 aa8.68□□□□□ -1.02
VPS53-202ENST00000389040 NAT1P18440 290 aa8.68□□□□□ -1.02
VPS53-202ENST00000389040 PRKACBP22694 351 aa8.68□□□□□ -1.02
VPS53-202ENST00000389040 GCH1P30793 250 aa8.68□□□□□ -1.02
VPS53-202ENST00000389040 ZNF81P51508 661 aa8.68□□□□□ -1.02
VPS53-202ENST00000389040 H2BFSP57053 126 aa8.68□□□□□ -1.02
VPS53-202ENST00000389040 TSPAN5P62079 268 aa8.68□□□□□ -1.02
VPS53-202ENST00000389040 MALLQ13021 153 aa8.68□□□□□ -1.02
VPS53-202ENST00000389040 ADIPOQQ15848 244 aa8.68□□□□□ -1.02
VPS53-202ENST00000389040 C2orf68Q2NKX9 166 aa8.68□□□□□ -1.02
VPS53-202ENST00000389040 CLVS2Q5SYC1 327 aa8.68□□□□□ -1.02
VPS53-202ENST00000389040 TMEM42Q69YG0 159 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 91.1 ms