RNA–Protein interactions for RNA: ENST00000359082.3

SHANK1-202, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 5 BASIC

Gene SHANK1, Length 6,459 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-202ENST00000359082 G6PCP35575 357 aa16.31■□□□□ 0.2
SHANK1-202ENST00000359082 TRA2AQ13595 282 aaKnown RBP eCLIP16.31■□□□□ 0.2
SHANK1-202ENST00000359082 RSRP1Q9BUV0 290 aa16.31■□□□□ 0.2
SHANK1-202ENST00000359082 ZNF207O43670 478 aaKnown RBP16.3■□□□□ 0.2
SHANK1-202ENST00000359082 AGFG2O95081 481 aa16.3■□□□□ 0.2
SHANK1-202ENST00000359082 RAB1BQ9H0U4 201 aa16.3■□□□□ 0.2
SHANK1-202ENST00000359082 SH2D2AQ9NP31 389 aa16.3■□□□□ 0.2
SHANK1-202ENST00000359082 LAMB1P07942 1786 aa16.3■□□□□ 0.2
SHANK1-202ENST00000359082 SCN7AQ01118 1682 aa16.3■□□□□ 0.2
SHANK1-202ENST00000359082 HOXB3P14651 431 aaPredicted RBP16.3■□□□□ 0.2
SHANK1-202ENST00000359082 TBC1D26Q86UD7 250 aa16.3■□□□□ 0.2
SHANK1-202ENST00000359082 MS4A10Q96PG2 267 aa16.3■□□□□ 0.2
SHANK1-202ENST00000359082 TMEM116Q8NCL8 245 aa16.3■□□□□ 0.2
SHANK1-202ENST00000359082 ZFPL1O95159 310 aa16.3■□□□□ 0.2
SHANK1-202ENST00000359082 RTP5Q14D33 572 aa16.3■□□□□ 0.2
SHANK1-202ENST00000359082 PDPNQ86YL7 162 aa16.3■□□□□ 0.2
SHANK1-202ENST00000359082 NEURL2Q9BR09 285 aa16.3■□□□□ 0.2
SHANK1-202ENST00000359082 ZNF275Q9NSD4 429 aaPredicted RBP16.3■□□□□ 0.2
SHANK1-202ENST00000359082 TMPRSS2O15393 492 aa16.29■□□□□ 0.2
SHANK1-202ENST00000359082 ADAM11O75078 769 aa16.29■□□□□ 0.2
SHANK1-202ENST00000359082 ZNF205O95201 554 aa16.29■□□□□ 0.2
SHANK1-202ENST00000359082 SLC35E4Q6ICL7 350 aa16.29■□□□□ 0.2
SHANK1-202ENST00000359082 ASB10Q8WXI3 467 aa16.29■□□□□ 0.2
SHANK1-202ENST00000359082 SLC2A9Q9NRM0 540 aa16.29■□□□□ 0.2
SHANK1-202ENST00000359082 CADM4Q8NFZ8 388 aa16.29■□□□□ 0.2
SHANK1-202ENST00000359082 OR2I1PQ8NGU4 316 aa16.29■□□□□ 0.2
SHANK1-202ENST00000359082 SLC35B3Q9H1N7 401 aa16.29■□□□□ 0.2
SHANK1-202ENST00000359082 TBX21Q9UL17 535 aa16.29■□□□□ 0.2
SHANK1-202ENST00000359082 CD40P25942 277 aa16.29■□□□□ 0.2
SHANK1-202ENST00000359082 SOX8P57073 446 aa16.29■□□□□ 0.2
SHANK1-202ENST00000359082 RBPMS2Q6ZRY4 209 aaKnown RBP16.29■□□□□ 0.2
SHANK1-202ENST00000359082 OR52L2PQ8NGH6 319 aa16.29■□□□□ 0.2
SHANK1-202ENST00000359082 LOC102724200A0A096LPH7 203 aaPredicted RBP16.29■□□□□ 0.2
SHANK1-202ENST00000359082 FXYD1O00168 92 aa16.29■□□□□ 0.2
SHANK1-202ENST00000359082 CDX4O14627 284 aaPredicted RBP16.29■□□□□ 0.2
SHANK1-202ENST00000359082 AREGP15514 252 aa16.29■□□□□ 0.2
SHANK1-202ENST00000359082 LGALS7P47929 136 aa16.29■□□□□ 0.2
SHANK1-202ENST00000359082 SH2D5Q6ZV89 423 aa16.29■□□□□ 0.2
SHANK1-202ENST00000359082 C5orf52A6NGY3 159 aa16.29■□□□□ 0.2
SHANK1-202ENST00000359082 DNPH1O43598 174 aa16.29■□□□□ 0.2
SHANK1-202ENST00000359082 LANCL1O43813 399 aa16.29■□□□□ 0.2
SHANK1-202ENST00000359082 TTRP02766 147 aa16.29■□□□□ 0.2
SHANK1-202ENST00000359082 PPOXP50336 477 aa16.29■□□□□ 0.2
SHANK1-202ENST00000359082 IL13RA2Q14627 380 aa16.29■□□□□ 0.2
SHANK1-202ENST00000359082 FAM109BQ6ICB4 259 aaPredicted RBP16.29■□□□□ 0.2
SHANK1-202ENST00000359082 CLDN34H7C241 214 aa16.28■□□□□ 0.2
SHANK1-202ENST00000359082 FAM87AP0C7U9 286 aa16.28■□□□□ 0.2
SHANK1-202ENST00000359082 LINC01555Q8NAE3 123 aa16.28■□□□□ 0.2
SHANK1-202ENST00000359082 C5orf17Q8NAS9 161 aa16.28■□□□□ 0.2
SHANK1-202ENST00000359082 PCOLCE2Q9UKZ9 415 aa16.28■□□□□ 0.2
SHANK1-202ENST00000359082 IGKV3-7A0A075B6H7 116 aa16.28■□□□□ 0.2
SHANK1-202ENST00000359082 MGPP08493 103 aa16.28■□□□□ 0.2
SHANK1-202ENST00000359082 TMEM211Q6ICI0 200 aa16.28■□□□□ 0.2
SHANK1-202ENST00000359082 SLC6A1P30531 599 aa16.28■□□□□ 0.2
SHANK1-202ENST00000359082 CEACAM3P40198 252 aa16.28■□□□□ 0.2
SHANK1-202ENST00000359082 UBE2L3P68036 154 aaKnown RBP16.28■□□□□ 0.2
SHANK1-202ENST00000359082 TCTEX1D1Q8N7M0 179 aa16.28■□□□□ 0.2
SHANK1-202ENST00000359082 SLC26A10Q8NG04 563 aa16.28■□□□□ 0.2
SHANK1-202ENST00000359082 FLYWCH2Q96CP2 140 aaKnown RBP16.28■□□□□ 0.2
SHANK1-202ENST00000359082 THYN1Q9P016 225 aa16.28■□□□□ 0.2
SHANK1-202ENST00000359082 MTFP1Q9UDX5 166 aa16.28■□□□□ 0.2
SHANK1-202ENST00000359082 OR2T8A6NH00 312 aa16.28■□□□□ 0.2
SHANK1-202ENST00000359082 WNT3P56703 355 aa16.28■□□□□ 0.2
SHANK1-202ENST00000359082 ZNF141Q15928 474 aa16.28■□□□□ 0.2
SHANK1-202ENST00000359082 LIAT1Q6ZQX7 453 aa16.28■□□□□ 0.2
SHANK1-202ENST00000359082 OR2C3Q8N628 320 aa16.28■□□□□ 0.2
SHANK1-202ENST00000359082 OR8B12Q8NGG6 310 aa16.28■□□□□ 0.2
SHANK1-202ENST00000359082 CT55Q8WUE5 264 aa16.28■□□□□ 0.2
SHANK1-202ENST00000359082 FAM210BQ96KR6 192 aa16.28■□□□□ 0.2
SHANK1-202ENST00000359082 CACNA1SQ13698 1873 aa16.28■□□□□ 0.2
SHANK1-202ENST00000359082 PDCD6O75340 191 aa16.28■□□□□ 0.2
SHANK1-202ENST00000359082 MPC2O95563 127 aa16.28■□□□□ 0.2
SHANK1-202ENST00000359082 APELAP0DMC3 54 aa16.28■□□□□ 0.2
SHANK1-202ENST00000359082 ACP1P24666 158 aa16.28■□□□□ 0.2
SHANK1-202ENST00000359082 TCL1AP56279 114 aa16.28■□□□□ 0.2
SHANK1-202ENST00000359082 EIF4E3Q8N5X7 224 aaKnown RBP16.28■□□□□ 0.2
SHANK1-202ENST00000359082 OR4D10Q8NGI6 311 aa16.28■□□□□ 0.2
SHANK1-202ENST00000359082 IGHV1OR21-1A0A087WYE8 117 aa16.27■□□□□ 0.2
SHANK1-202ENST00000359082 PRSS1P07477 247 aa16.27■□□□□ 0.2
SHANK1-202ENST00000359082 CT62P0C5K7 136 aa16.27■□□□□ 0.2
SHANK1-202ENST00000359082 OR8B3Q8NGG8 313 aa16.27■□□□□ 0.2
SHANK1-202ENST00000359082 R3HDM4Q96D70 268 aa16.27■□□□□ 0.2
SHANK1-202ENST00000359082 SMIM12Q96EX1 92 aa16.27■□□□□ 0.2
SHANK1-202ENST00000359082 OR8B2Q96RD0 313 aa16.27■□□□□ 0.2
SHANK1-202ENST00000359082 RPP25Q9BUL9 199 aaKnown RBP16.27■□□□□ 0.2
SHANK1-202ENST00000359082 FBXL17Q9UF56 701 aa16.27■□□□□ 0.2
SHANK1-202ENST00000359082 Q7L0L9 218 aa16.27■□□□□ 0.2
SHANK1-202ENST00000359082 OR1L1Q8NH94 360 aa16.27■□□□□ 0.2
SHANK1-202ENST00000359082 ZFP64Q9NPA5 681 aa16.27■□□□□ 0.2
SHANK1-202ENST00000359082 GLI3P10071 1580 aa16.27■□□□□ 0.2
SHANK1-202ENST00000359082 KCNE1BA0A087WTH5 132 aa16.27■□□□□ 0.2
SHANK1-202ENST00000359082 INHBBP09529 407 aa16.27■□□□□ 0.2
SHANK1-202ENST00000359082 MRM1Q6IN84 353 aaKnown RBP16.27■□□□□ 0.2
SHANK1-202ENST00000359082 SLC7A10Q9NS82 523 aa16.27■□□□□ 0.19
SHANK1-202ENST00000359082 COL9A1P20849 921 aa16.27■□□□□ 0.19
SHANK1-202ENST00000359082 ACAA2P42765 397 aaKnown RBP16.27■□□□□ 0.19
SHANK1-202ENST00000359082 COTL1Q14019 142 aa16.27■□□□□ 0.19
SHANK1-202ENST00000359082 TSPO2Q5TGU0 170 aa16.27■□□□□ 0.19
SHANK1-202ENST00000359082 DGAT2L7PQ6IED9 249 aa16.27■□□□□ 0.19
SHANK1-202ENST00000359082 OR1L6Q8NGR2 347 aa16.27■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms