RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 PLEKHN1Q494U1 663 aaPredicted RBP13.3□□□□□ -0.28
UPF3B-202ENST00000345865 TMEM164Q5U3C3 297 aa13.3□□□□□ -0.28
UPF3B-202ENST00000345865 GGNBP1Q5YKI7 109 aa13.3□□□□□ -0.28
UPF3B-202ENST00000345865 OR2A2Q6IF42 318 aa13.3□□□□□ -0.28
UPF3B-202ENST00000345865 HPSE2Q8WWQ2 592 aa13.3□□□□□ -0.28
UPF3B-202ENST00000345865 DUX4Q9UBX2 424 aa13.3□□□□□ -0.28
UPF3B-202ENST00000345865 ARHGAP21Q5T5U3 1957 aa13.3□□□□□ -0.28
UPF3B-202ENST00000345865 PCNX2A6NKB5 2137 aa13.3□□□□□ -0.28
UPF3B-202ENST00000345865 NUPL2O15504 423 aaKnown RBP13.3□□□□□ -0.28
UPF3B-202ENST00000345865 NGFP01138 241 aa13.3□□□□□ -0.28
UPF3B-202ENST00000345865 ZNF728P0DKX0 622 aa13.3□□□□□ -0.28
UPF3B-202ENST00000345865 HKR1P10072 659 aa13.3□□□□□ -0.28
UPF3B-202ENST00000345865 CD79AP11912 226 aa13.3□□□□□ -0.28
UPF3B-202ENST00000345865 AIMP2Q13155 320 aaKnown RBP13.3□□□□□ -0.28
UPF3B-202ENST00000345865 SMUG1Q53HV7 270 aa13.3□□□□□ -0.28
UPF3B-202ENST00000345865 MARC2Q969Z3 335 aa13.3□□□□□ -0.28
UPF3B-202ENST00000345865 CNTNAP3BQ96NU0 1288 aa13.3□□□□□ -0.28
UPF3B-202ENST00000345865 PAPOLGQ9BWT3 736 aaKnown RBP13.3□□□□□ -0.28
UPF3B-202ENST00000345865 CNTNAP3Q9BZ76 1288 aa13.3□□□□□ -0.28
UPF3B-202ENST00000345865 OR2S2Q9NQN1 319 aa13.3□□□□□ -0.28
UPF3B-202ENST00000345865 PARPBPQ9NWS1 579 aa13.3□□□□□ -0.28
UPF3B-202ENST00000345865 TSPAN4O14817 238 aa13.29□□□□□ -0.28
UPF3B-202ENST00000345865 OR7C1O76099 320 aaPredicted RBP13.29□□□□□ -0.28
UPF3B-202ENST00000345865 OR5AC1P0C628 307 aa13.29□□□□□ -0.28
UPF3B-202ENST00000345865 AKR1C2P52895 323 aa13.29□□□□□ -0.28
UPF3B-202ENST00000345865 AKR1C1Q04828 323 aa13.29□□□□□ -0.28
UPF3B-202ENST00000345865 TMEM187Q14656 261 aa13.29□□□□□ -0.28
UPF3B-202ENST00000345865 STK11Q15831 433 aa13.29□□□□□ -0.28
UPF3B-202ENST00000345865 PHLDA2Q53GA4 152 aa13.29□□□□□ -0.28
UPF3B-202ENST00000345865 NUFIP2Q7Z417 695 aaKnown RBP13.29□□□□□ -0.28
UPF3B-202ENST00000345865 LDAHQ9H6V9 325 aa13.29□□□□□ -0.28
UPF3B-202ENST00000345865 DNAJB11Q9UBS4 358 aa13.29□□□□□ -0.28
UPF3B-202ENST00000345865 ATPIF1Q9UII2 106 aa13.29□□□□□ -0.28
UPF3B-202ENST00000345865 LIPGQ9Y5X9 500 aa13.29□□□□□ -0.28
UPF3B-202ENST00000345865 PQLC2LA1A4F0 135 aa13.29□□□□□ -0.28
UPF3B-202ENST00000345865 SYNGR4O95473 234 aa13.29□□□□□ -0.28
UPF3B-202ENST00000345865 ACTL6AO96019 429 aa13.29□□□□□ -0.28
UPF3B-202ENST00000345865 BCL3P20749 454 aa13.29□□□□□ -0.28
UPF3B-202ENST00000345865 FUT3P21217 361 aa13.29□□□□□ -0.28
UPF3B-202ENST00000345865 TAGLNQ01995 201 aaKnown RBP13.29□□□□□ -0.28
UPF3B-202ENST00000345865 MALLQ13021 153 aa13.29□□□□□ -0.28
UPF3B-202ENST00000345865 PRDX4Q13162 271 aa13.29□□□□□ -0.28
UPF3B-202ENST00000345865 ATP1A1-AS1Q5TC04 95 aa13.29□□□□□ -0.28
UPF3B-202ENST00000345865 OR11L1Q8NGX0 322 aa13.29□□□□□ -0.28
UPF3B-202ENST00000345865 RTN4IP1Q8WWV3 396 aaPredicted RBP13.29□□□□□ -0.28
UPF3B-202ENST00000345865 PIGMQ9H3S5 423 aa13.29□□□□□ -0.28
UPF3B-202ENST00000345865 IL36RNQ9UBH0 155 aa13.29□□□□□ -0.28
UPF3B-202ENST00000345865 TUBD1Q9UJT1 453 aa13.29□□□□□ -0.28
UPF3B-202ENST00000345865 STARD10Q9Y365 291 aa13.29□□□□□ -0.28
UPF3B-202ENST00000345865 TNRC6AQ8NDV7 1962 aaKnown RBP13.28□□□□□ -0.28
UPF3B-202ENST00000345865 RCC1P18754 421 aaPredicted RBP13.28□□□□□ -0.28
UPF3B-202ENST00000345865 SPINK2P20155 84 aa13.28□□□□□ -0.28
UPF3B-202ENST00000345865 GPM6AP51674 278 aa13.28□□□□□ -0.28
UPF3B-202ENST00000345865 SRSF3P84103 164 aaKnown RBP13.28□□□□□ -0.28
UPF3B-202ENST00000345865 PLGLB1Q02325 96 aa13.28□□□□□ -0.28
UPF3B-202ENST00000345865 RPL7L1Q6DKI1 246 aaKnown RBP13.28□□□□□ -0.28
UPF3B-202ENST00000345865 Q8NFD4 153 aa13.28□□□□□ -0.28
UPF3B-202ENST00000345865 SLAMF9Q96A28 289 aa13.28□□□□□ -0.28
UPF3B-202ENST00000345865 TECTBQ96PL2 329 aa13.28□□□□□ -0.28
UPF3B-202ENST00000345865 ZNF442Q9H7R0 627 aa13.28□□□□□ -0.28
UPF3B-202ENST00000345865 NAA60Q9H7X0 242 aa13.28□□□□□ -0.28
UPF3B-202ENST00000345865 C12orf4Q9NQ89 552 aa13.28□□□□□ -0.28
UPF3B-202ENST00000345865 SLC2A9Q9NRM0 540 aa13.28□□□□□ -0.28
UPF3B-202ENST00000345865 R4GN57 208 aa13.28□□□□□ -0.28
UPF3B-202ENST00000345865 SS18L1O75177 396 aaPredicted RBP13.28□□□□□ -0.28
UPF3B-202ENST00000345865 TNFSF15O95150 251 aa13.28□□□□□ -0.28
UPF3B-202ENST00000345865 SP1P08047 785 aa13.28□□□□□ -0.28
UPF3B-202ENST00000345865 PET100P0DJ07 73 aa13.28□□□□□ -0.28
UPF3B-202ENST00000345865 HAAOP46952 286 aa13.28□□□□□ -0.28
UPF3B-202ENST00000345865 MEOX1P50221 254 aa13.28□□□□□ -0.28
UPF3B-202ENST00000345865 RAB1AP62820 205 aa13.28□□□□□ -0.28
UPF3B-202ENST00000345865 ZNF273Q14593 569 aa13.28□□□□□ -0.28
UPF3B-202ENST00000345865 MST1LQ2TV78 715 aa13.28□□□□□ -0.28
UPF3B-202ENST00000345865 IGSF11Q5DX21 431 aa13.28□□□□□ -0.28
UPF3B-202ENST00000345865 LYZL2Q7Z4W2 148 aa13.28□□□□□ -0.28
UPF3B-202ENST00000345865 GALNT14Q96FL9 552 aa13.28□□□□□ -0.28
UPF3B-202ENST00000345865 ZNF286AQ9HBT8 521 aa13.28□□□□□ -0.28
UPF3B-202ENST00000345865 ABI3Q9P2A4 366 aa13.28□□□□□ -0.28
UPF3B-202ENST00000345865 MEMO1Q9Y316 297 aa13.28□□□□□ -0.28
UPF3B-202ENST00000345865 ZNF724A8MTY0 619 aa13.27□□□□□ -0.28
UPF3B-202ENST00000345865 DEDDO75618 318 aa13.27□□□□□ -0.28
UPF3B-202ENST00000345865 MDS2Q8NDY4 140 aa13.27□□□□□ -0.28
UPF3B-202ENST00000345865 RNF141Q8WVD5 230 aa13.27□□□□□ -0.28
UPF3B-202ENST00000345865 APH1AQ96BI3 265 aa13.27□□□□□ -0.28
UPF3B-202ENST00000345865 LRRC46Q96FV0 321 aa13.27□□□□□ -0.28
UPF3B-202ENST00000345865 NARS2Q96I59 477 aaKnown RBP13.27□□□□□ -0.28
UPF3B-202ENST00000345865 POM121L2Q96KW2 1035 aa13.27□□□□□ -0.28
UPF3B-202ENST00000345865 ZNF552Q9H707 407 aaPredicted RBP13.27□□□□□ -0.28
UPF3B-202ENST00000345865 MTCH1Q9NZJ7 389 aa13.27□□□□□ -0.28
UPF3B-202ENST00000345865 GLS2Q9UI32 602 aa13.27□□□□□ -0.28
UPF3B-202ENST00000345865 C3orf80F5H4A9 247 aa13.27□□□□□ -0.29
UPF3B-202ENST00000345865 BET1O15155 118 aa13.27□□□□□ -0.29
UPF3B-202ENST00000345865 LILRA1O75019 489 aa13.27□□□□□ -0.29
UPF3B-202ENST00000345865 AADACP22760 399 aa13.27□□□□□ -0.29
UPF3B-202ENST00000345865 NOVA1P51513 510 aaKnown RBP13.27□□□□□ -0.29
UPF3B-202ENST00000345865 HES3Q5TGS1 186 aa13.27□□□□□ -0.29
UPF3B-202ENST00000345865 TMEM211Q6ICI0 200 aa13.27□□□□□ -0.29
UPF3B-202ENST00000345865 OR5L1Q8NGL2 311 aa13.27□□□□□ -0.29
UPF3B-202ENST00000345865 GLYATL2Q8WU03 294 aa13.27□□□□□ -0.29
UPF3B-202ENST00000345865 MOB3AQ96BX8 217 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 226.7 ms