RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 EGLN3Q9H6Z9 239 aa3.66□□□□□ -1.82
NEDD4-201ENST00000338963 PLEKHF2Q9H8W4 249 aa3.66□□□□□ -1.82
NEDD4-201ENST00000338963 ANKRD10Q9NXR5 420 aa3.66□□□□□ -1.82
NEDD4-201ENST00000338963 CLEC1BQ9P126 229 aa3.66□□□□□ -1.82
NEDD4-201ENST00000338963 NAT8BQ9UHF3 227 aa3.66□□□□□ -1.82
NEDD4-201ENST00000338963 PXMP4Q9Y6I8 212 aa3.66□□□□□ -1.82
NEDD4-201ENST00000338963 COL2A1P02458 1487 aaPredicted RBP3.66□□□□□ -1.82
NEDD4-201ENST00000338963 MAST2Q6P0Q8 1798 aa3.66□□□□□ -1.82
NEDD4-201ENST00000338963 ANTXRLA6NF34 631 aa3.66□□□□□ -1.82
NEDD4-201ENST00000338963 DEGS1O15121 323 aa3.66□□□□□ -1.82
NEDD4-201ENST00000338963 NGFRP08138 427 aa3.66□□□□□ -1.82
NEDD4-201ENST00000338963 PDGFRLQ15198 375 aa3.66□□□□□ -1.82
NEDD4-201ENST00000338963 WDR25Q64LD2 544 aaPredicted RBP3.66□□□□□ -1.82
NEDD4-201ENST00000338963 CENPVQ7Z7K6 275 aaPredicted RBP3.66□□□□□ -1.82
NEDD4-201ENST00000338963 TMEM86AQ8N2M4 240 aa3.66□□□□□ -1.82
NEDD4-201ENST00000338963 NHLRC2Q8NBF2 726 aa3.66□□□□□ -1.82
NEDD4-201ENST00000338963 ADTRPQ96IZ2 230 aa3.66□□□□□ -1.82
NEDD4-201ENST00000338963 MCHR1Q99705 422 aa3.66□□□□□ -1.82
NEDD4-201ENST00000338963 CHST6Q9GZX3 395 aa3.66□□□□□ -1.82
NEDD4-201ENST00000338963 COA1Q9GZY4 146 aa3.66□□□□□ -1.82
NEDD4-201ENST00000338963 ISG20L2Q9H9L3 353 aaKnown RBP3.66□□□□□ -1.82
NEDD4-201ENST00000338963 CTNNBIP1Q9NSA3 81 aaPredicted RBP3.66□□□□□ -1.82
NEDD4-201ENST00000338963 MED31Q9Y3C7 131 aa3.66□□□□□ -1.82
NEDD4-201ENST00000338963 SIPA1L2Q9P2F8 1722 aaPredicted RBP3.65□□□□□ -1.82
NEDD4-201ENST00000338963 TRBV5-7A0A0A0MS05 114 aa3.65□□□□□ -1.82
NEDD4-201ENST00000338963 DPRXA6NFQ7 191 aa3.65□□□□□ -1.82
NEDD4-201ENST00000338963 H3BRM9 83 aa3.65□□□□□ -1.82
NEDD4-201ENST00000338963 KIR2DS3K7RE56 304 aa3.65□□□□□ -1.82
NEDD4-201ENST00000338963 YPEL1O60688 119 aa3.65□□□□□ -1.82
NEDD4-201ENST00000338963 PSG2P11465 335 aa3.65□□□□□ -1.82
NEDD4-201ENST00000338963 EPORP19235 508 aa3.65□□□□□ -1.82
NEDD4-201ENST00000338963 TNFRSF1BP20333 461 aa3.65□□□□□ -1.82
NEDD4-201ENST00000338963 GDF1P27539 372 aa3.65□□□□□ -1.82
NEDD4-201ENST00000338963 ZNF93P35789 620 aaPredicted RBP3.65□□□□□ -1.82
NEDD4-201ENST00000338963 RRADP55042 308 aa3.65□□□□□ -1.82
NEDD4-201ENST00000338963 KIR2DS3Q14952 304 aa3.65□□□□□ -1.82
NEDD4-201ENST00000338963 FAM219AQ8IW50 185 aa3.65□□□□□ -1.82
NEDD4-201ENST00000338963 PPTC7Q8NI37 304 aa3.65□□□□□ -1.82
NEDD4-201ENST00000338963 CACNG8Q8WXS5 425 aa3.65□□□□□ -1.82
NEDD4-201ENST00000338963 YPEL2Q96QA6 119 aa3.65□□□□□ -1.82
NEDD4-201ENST00000338963 PLA2G12AQ9BZM1 189 aa3.65□□□□□ -1.82
NEDD4-201ENST00000338963 MRM2Q9UI43 246 aaKnown RBP3.65□□□□□ -1.82
NEDD4-201ENST00000338963 DAPP1Q9UN19 280 aa3.65□□□□□ -1.82
NEDD4-201ENST00000338963 A0A087WUU8 490 aa3.65□□□□□ -1.82
NEDD4-201ENST00000338963 CENPVL1A0A0U1RR11 272 aa3.65□□□□□ -1.82
NEDD4-201ENST00000338963 C7orf71A4D174 169 aa3.65□□□□□ -1.82
NEDD4-201ENST00000338963 TMEM189A5PLL7 270 aa3.65□□□□□ -1.82
NEDD4-201ENST00000338963 GLOD5A6NK44 160 aa3.65□□□□□ -1.82
NEDD4-201ENST00000338963 H0YIZ8 118 aa3.65□□□□□ -1.82
NEDD4-201ENST00000338963 SRFP11831 508 aa3.65□□□□□ -1.82
NEDD4-201ENST00000338963 NID1P14543 1247 aa3.65□□□□□ -1.82
NEDD4-201ENST00000338963 PPP1CCP36873 323 aaKnown RBP3.65□□□□□ -1.82
NEDD4-201ENST00000338963 CTRLP40313 264 aa3.65□□□□□ -1.82
NEDD4-201ENST00000338963 TSFMP43897 325 aaKnown RBP3.65□□□□□ -1.82
NEDD4-201ENST00000338963 B4GALNT1Q00973 533 aa3.65□□□□□ -1.82
NEDD4-201ENST00000338963 FMODQ06828 376 aa3.65□□□□□ -1.82
NEDD4-201ENST00000338963 ANKRD55Q3KP44 614 aa3.65□□□□□ -1.82
NEDD4-201ENST00000338963 LINC00696Q6ZRV3 163 aa3.65□□□□□ -1.82
NEDD4-201ENST00000338963 ZNF595Q8IYB9 648 aa3.65□□□□□ -1.82
NEDD4-201ENST00000338963 PRR22Q8IZ63 422 aa3.65□□□□□ -1.82
NEDD4-201ENST00000338963 LRRC61Q9BV99 259 aa3.65□□□□□ -1.82
NEDD4-201ENST00000338963 PRSS16Q9NQE7 514 aa3.65□□□□□ -1.82
NEDD4-201ENST00000338963 EHFQ9NZC4 300 aa3.65□□□□□ -1.82
NEDD4-201ENST00000338963 SERTAD3Q9UJW9 196 aa3.65□□□□□ -1.82
NEDD4-201ENST00000338963 DHDHQ9UQ10 334 aa3.65□□□□□ -1.82
NEDD4-201ENST00000338963 COL5A2P05997 1499 aaPredicted RBP3.65□□□□□ -1.83
NEDD4-201ENST00000338963 RGPD8O14715 1765 aaPredicted RBP3.65□□□□□ -1.83
NEDD4-201ENST00000338963 RGPD5Q99666 1765 aa3.65□□□□□ -1.83
NEDD4-201ENST00000338963 TMEM262E9PQX1 116 aa3.65□□□□□ -1.83
NEDD4-201ENST00000338963 GPR182O15218 404 aa3.65□□□□□ -1.83
NEDD4-201ENST00000338963 MSCO60682 206 aa3.65□□□□□ -1.83
NEDD4-201ENST00000338963 SLC25A14O95258 325 aaPredicted RBP3.65□□□□□ -1.83
NEDD4-201ENST00000338963 CNIH1O95406 144 aa3.65□□□□□ -1.83
NEDD4-201ENST00000338963 GPR75O95800 540 aa3.65□□□□□ -1.83
NEDD4-201ENST00000338963 TGFAP01135 160 aa3.65□□□□□ -1.83
NEDD4-201ENST00000338963 HLA-DQA2P01906 255 aa3.65□□□□□ -1.83
NEDD4-201ENST00000338963 CXCL8P10145 99 aa3.65□□□□□ -1.83
NEDD4-201ENST00000338963 IRF1P10914 325 aa3.65□□□□□ -1.83
NEDD4-201ENST00000338963 FSTP19883 344 aa3.65□□□□□ -1.83
NEDD4-201ENST00000338963 DUSP5Q16690 384 aa3.65□□□□□ -1.83
NEDD4-201ENST00000338963 ZNF880Q6PDB4 577 aa3.65□□□□□ -1.83
NEDD4-201ENST00000338963 C10orf111Q8N326 155 aa3.65□□□□□ -1.83
NEDD4-201ENST00000338963 NPWQ8N729 165 aa3.65□□□□□ -1.83
NEDD4-201ENST00000338963 MBD3L1Q8WWY6 194 aa3.65□□□□□ -1.83
NEDD4-201ENST00000338963 WDR34Q96EX3 536 aa3.65□□□□□ -1.83
NEDD4-201ENST00000338963 MRIQ9BWK5 157 aa3.65□□□□□ -1.83
NEDD4-201ENST00000338963 TMEM126AQ9H061 195 aa3.65□□□□□ -1.83
NEDD4-201ENST00000338963 WDR54Q9H977 334 aa3.65□□□□□ -1.83
NEDD4-201ENST00000338963 POLR1DQ9Y2S0 133 aa3.65□□□□□ -1.83
NEDD4-201ENST00000338963 UFC1Q9Y3C8 167 aa3.65□□□□□ -1.83
NEDD4-201ENST00000338963 CEBPZOSA8MTT3 80 aa3.65□□□□□ -1.83
NEDD4-201ENST00000338963 FFAR1O14842 300 aa3.65□□□□□ -1.83
NEDD4-201ENST00000338963 APOA2P02652 100 aa3.65□□□□□ -1.83
NEDD4-201ENST00000338963 IGLC1P0CG04 106 aa3.65□□□□□ -1.83
NEDD4-201ENST00000338963 RPS12P25398 132 aaKnown RBP3.65□□□□□ -1.83
NEDD4-201ENST00000338963 AMTP48728 403 aa3.65□□□□□ -1.83
NEDD4-201ENST00000338963 ZXDCQ2QGD7 858 aaPredicted RBP3.65□□□□□ -1.83
NEDD4-201ENST00000338963 TMEM64Q6YI46 380 aa3.65□□□□□ -1.83
NEDD4-201ENST00000338963 OR2Z1Q8NG97 314 aa3.65□□□□□ -1.83
NEDD4-201ENST00000338963 OR51E1Q8TCB6 317 aa3.65□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms