RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 NAP1L6A6NFF2 107 aa12.61□□□□□ -0.39
CCDC88C-202ENST00000334448 M0R233 179 aa12.61□□□□□ -0.39
CCDC88C-202ENST00000334448 GRPP07492 148 aa12.61□□□□□ -0.39
CCDC88C-202ENST00000334448 GABRR1P24046 479 aa12.61□□□□□ -0.39
CCDC88C-202ENST00000334448 GUCA2AQ02747 115 aa12.61□□□□□ -0.39
CCDC88C-202ENST00000334448 TESK1Q15569 626 aa12.61□□□□□ -0.39
CCDC88C-202ENST00000334448 SWI5Q1ZZU3 235 aa12.61□□□□□ -0.39
CCDC88C-202ENST00000334448 MST1LQ2TV78 715 aa12.61□□□□□ -0.39
CCDC88C-202ENST00000334448 TRIM16LQ309B1 348 aa12.61□□□□□ -0.39
CCDC88C-202ENST00000334448 PRAMEF6Q5VXH4 476 aa12.61□□□□□ -0.39
CCDC88C-202ENST00000334448 ZNF57Q68EA5 555 aaPredicted RBP12.61□□□□□ -0.39
CCDC88C-202ENST00000334448 MZT2BQ6NZ67 158 aa12.61□□□□□ -0.39
CCDC88C-202ENST00000334448 EMG1Q92979 244 aaKnown RBP12.61□□□□□ -0.39
CCDC88C-202ENST00000334448 COX4I2Q96KJ9 171 aa12.61□□□□□ -0.39
CCDC88C-202ENST00000334448 NEDD4LQ96PU5 975 aa12.61□□□□□ -0.39
CCDC88C-202ENST00000334448 OR2V2Q96R30 315 aa12.61□□□□□ -0.39
CCDC88C-202ENST00000334448 OCSTAMPQ9BR26 566 aa12.61□□□□□ -0.39
CCDC88C-202ENST00000334448 FN3KRPQ9HA64 309 aa12.61□□□□□ -0.39
CCDC88C-202ENST00000334448 CACNG2Q9Y698 323 aa12.61□□□□□ -0.39
CCDC88C-202ENST00000334448 MYO18BQ8IUG5 2567 aa12.6□□□□□ -0.39
CCDC88C-202ENST00000334448 POM121CA8CG34 1229 aa12.6□□□□□ -0.39
CCDC88C-202ENST00000334448 SRRM5B3KS81 715 aa12.6□□□□□ -0.39
CCDC88C-202ENST00000334448 PLAUP00749 431 aa12.6□□□□□ -0.39
CCDC88C-202ENST00000334448 CD74P04233 296 aa12.6□□□□□ -0.39
CCDC88C-202ENST00000334448 PRKACAP17612 351 aa12.6□□□□□ -0.39
CCDC88C-202ENST00000334448 TBPP20226 339 aa12.6□□□□□ -0.39
CCDC88C-202ENST00000334448 DTYMKP23919 212 aa12.6□□□□□ -0.39
CCDC88C-202ENST00000334448 SLC6A1P30531 599 aa12.6□□□□□ -0.39
CCDC88C-202ENST00000334448 GNG2P59768 71 aa12.6□□□□□ -0.39
CCDC88C-202ENST00000334448 TNFAIP6P98066 277 aaPredicted RBP12.6□□□□□ -0.39
CCDC88C-202ENST00000334448 MPPED2Q15777 294 aa12.6□□□□□ -0.39
CCDC88C-202ENST00000334448 PCGF3Q3KNV8 242 aa12.6□□□□□ -0.39
CCDC88C-202ENST00000334448 SHEQ5VZ18 495 aa12.6□□□□□ -0.39
CCDC88C-202ENST00000334448 RTN4RL2Q86UN3 420 aa12.6□□□□□ -0.39
CCDC88C-202ENST00000334448 TMEM229BQ8NBD8 167 aa12.6□□□□□ -0.39
CCDC88C-202ENST00000334448 DUSP18Q8NEJ0 188 aa12.6□□□□□ -0.39
CCDC88C-202ENST00000334448 NUDCD2Q8WVJ2 157 aa12.6□□□□□ -0.39
CCDC88C-202ENST00000334448 NEUROG1Q92886 237 aa12.6□□□□□ -0.39
CCDC88C-202ENST00000334448 PIK3IP1Q96FE7 263 aa12.6□□□□□ -0.39
CCDC88C-202ENST00000334448 ZNF488Q96MN9 340 aa12.6□□□□□ -0.39
CCDC88C-202ENST00000334448 CHST6Q9GZX3 395 aa12.6□□□□□ -0.39
CCDC88C-202ENST00000334448 OCEL1Q9H607 264 aa12.6□□□□□ -0.39
CCDC88C-202ENST00000334448 ZMAT3Q9HA38 289 aaKnown RBP12.6□□□□□ -0.39
CCDC88C-202ENST00000334448 PLEKHJ1Q9NW61 149 aa12.6□□□□□ -0.39
CCDC88C-202ENST00000334448 CISD1Q9NZ45 108 aaKnown RBP12.6□□□□□ -0.39
CCDC88C-202ENST00000334448 ELF5Q9UKW6 265 aaPredicted RBP12.6□□□□□ -0.39
CCDC88C-202ENST00000334448 FAM208BQ5VWN6 2430 aa12.6□□□□□ -0.39
CCDC88C-202ENST00000334448 USP9XQ93008 2570 aaPredicted RBP12.6□□□□□ -0.39
CCDC88C-202ENST00000334448 SPTBN1Q01082 2364 aaKnown RBP12.59□□□□□ -0.39
CCDC88C-202ENST00000334448 CHD6Q8TD26 2715 aa12.59□□□□□ -0.39
CCDC88C-202ENST00000334448 A6NLC8 198 aa12.59□□□□□ -0.39
CCDC88C-202ENST00000334448 CENPXA8MT69 81 aa12.59□□□□□ -0.39
CCDC88C-202ENST00000334448 C19orf84I3L1E1 186 aa12.59□□□□□ -0.39
CCDC88C-202ENST00000334448 SPRY3O43610 288 aa12.59□□□□□ -0.39
CCDC88C-202ENST00000334448 OR7C1O76099 320 aaPredicted RBP12.59□□□□□ -0.39
CCDC88C-202ENST00000334448 NXPH2O95156 264 aa12.59□□□□□ -0.39
CCDC88C-202ENST00000334448 KNG1P01042 644 aa12.59□□□□□ -0.39
CCDC88C-202ENST00000334448 LHBP01229 141 aa12.59□□□□□ -0.39
CCDC88C-202ENST00000334448 BTCP35070 178 aa12.59□□□□□ -0.39
CCDC88C-202ENST00000334448 TAS2R19P59542 299 aa12.59□□□□□ -0.39
CCDC88C-202ENST00000334448 SMIM21Q3B7S5 101 aa12.59□□□□□ -0.39
CCDC88C-202ENST00000334448 RNASE12Q5GAN4 147 aaKnown RBP12.59□□□□□ -0.39
CCDC88C-202ENST00000334448 Q6P435 159 aa12.59□□□□□ -0.39
CCDC88C-202ENST00000334448 FIP1L1Q6UN15 594 aaKnown RBP12.59□□□□□ -0.39
CCDC88C-202ENST00000334448 C6orf201Q7Z4U5 140 aa12.59□□□□□ -0.39
CCDC88C-202ENST00000334448 NRARPQ7Z6K4 114 aa12.59□□□□□ -0.39
CCDC88C-202ENST00000334448 TRAPPC6BQ86SZ2 158 aa12.59□□□□□ -0.39
CCDC88C-202ENST00000334448 ITLN1Q8WWA0 313 aa12.59□□□□□ -0.39
CCDC88C-202ENST00000334448 MS4A5Q9H3V2 200 aa12.59□□□□□ -0.39
CCDC88C-202ENST00000334448 C1orf123Q9NWV4 160 aa12.59□□□□□ -0.39
CCDC88C-202ENST00000334448 IL36RNQ9UBH0 155 aa12.59□□□□□ -0.39
CCDC88C-202ENST00000334448 FLNCQ14315 2725 aa12.59□□□□□ -0.39
CCDC88C-202ENST00000334448 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP12.58□□□□□ -0.4
CCDC88C-202ENST00000334448 IFNL4K9M1U5 179 aa12.58□□□□□ -0.4
CCDC88C-202ENST00000334448 TNFRSF1AP19438 455 aa12.58□□□□□ -0.4
CCDC88C-202ENST00000334448 LMO1P25800 156 aa12.58□□□□□ -0.4
CCDC88C-202ENST00000334448 FAUP35544 74 aaKnown RBP12.58□□□□□ -0.4
CCDC88C-202ENST00000334448 PPOXP50336 477 aa12.58□□□□□ -0.4
CCDC88C-202ENST00000334448 SRSF7Q16629 238 aaKnown RBP eCLIP12.58□□□□□ -0.4
CCDC88C-202ENST00000334448 PLA1AQ53H76 456 aa12.58□□□□□ -0.4
CCDC88C-202ENST00000334448 ACP7Q6ZNF0 438 aa12.58□□□□□ -0.4
CCDC88C-202ENST00000334448 Q6ZS49 121 aa12.58□□□□□ -0.4
CCDC88C-202ENST00000334448 ZNF826PQ6ZT77 177 aa12.58□□□□□ -0.4
CCDC88C-202ENST00000334448 HOGA1Q86XE5 327 aa12.58□□□□□ -0.4
CCDC88C-202ENST00000334448 SULT4A1Q9BR01 284 aa12.58□□□□□ -0.4
CCDC88C-202ENST00000334448 HRASLSQ9HDD0 168 aa12.58□□□□□ -0.4
CCDC88C-202ENST00000334448 GCM1Q9NP62 436 aa12.58□□□□□ -0.4
CCDC88C-202ENST00000334448 TREM2Q9NZC2 230 aa12.58□□□□□ -0.4
CCDC88C-202ENST00000334448 ZNF581Q9P0T4 197 aa12.58□□□□□ -0.4
CCDC88C-202ENST00000334448 COPZ2Q9P299 210 aa12.58□□□□□ -0.4
CCDC88C-202ENST00000334448 EDARQ9UNE0 448 aa12.58□□□□□ -0.4
CCDC88C-202ENST00000334448 NPTNQ9Y639 398 aa12.58□□□□□ -0.4
CCDC88C-202ENST00000334448 TRBV6-6A0A0A6YYG2 114 aa12.57□□□□□ -0.4
CCDC88C-202ENST00000334448 TRAV24A0A0B4J272 114 aa12.57□□□□□ -0.4
CCDC88C-202ENST00000334448 CLEC18AA5D8T8 446 aa12.57□□□□□ -0.4
CCDC88C-202ENST00000334448 AKAIN1P0CW23 69 aa12.57□□□□□ -0.4
CCDC88C-202ENST00000334448 PAX5Q02548 391 aa12.57□□□□□ -0.4
CCDC88C-202ENST00000334448 IKZF1Q13422 519 aa12.57□□□□□ -0.4
CCDC88C-202ENST00000334448 ARFRP1Q13795 201 aa12.57□□□□□ -0.4
CCDC88C-202ENST00000334448 ACTBL2Q562R1 376 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 79.8 ms