RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 FAM90A20PA6NIJ5 464 aa20.62■□□□□ 0.89
TRIM54-201ENST00000296098 FAM90A8PA6NJQ4 464 aa20.62■□□□□ 0.89
TRIM54-201ENST00000296098 FAM90A7PA6NKC0 464 aa20.62■□□□□ 0.89
TRIM54-201ENST00000296098 FAM90A22PA8MWA6 464 aa20.62■□□□□ 0.89
TRIM54-201ENST00000296098 FAM90A12PA8MX19 464 aa20.62■□□□□ 0.89
TRIM54-201ENST00000296098 FAM90A5PA8MXJ8 464 aa20.62■□□□□ 0.89
TRIM54-201ENST00000296098 FAM90A23PA8MXZ1 464 aa20.62■□□□□ 0.89
TRIM54-201ENST00000296098 NGFP01138 241 aa20.62■□□□□ 0.89
TRIM54-201ENST00000296098 FAM90A15PP0C7V4 464 aa20.62■□□□□ 0.89
TRIM54-201ENST00000296098 FAM90A13PP0C7W8 464 aa20.62■□□□□ 0.89
TRIM54-201ENST00000296098 FAM90A14PP0C7W9 464 aa20.62■□□□□ 0.89
TRIM54-201ENST00000296098 FAM90A24PP0C7X0 464 aa20.62■□□□□ 0.89
TRIM54-201ENST00000296098 BCL3P20749 454 aa20.62■□□□□ 0.89
TRIM54-201ENST00000296098 HAAOP46952 286 aa20.62■□□□□ 0.89
TRIM54-201ENST00000296098 HIKESHIQ53FT3 197 aa20.62■□□□□ 0.89
TRIM54-201ENST00000296098 C1QTNF12Q5T7M4 302 aa20.62■□□□□ 0.89
TRIM54-201ENST00000296098 HSD17B13Q7Z5P4 300 aaPredicted RBP20.62■□□□□ 0.89
TRIM54-201ENST00000296098 OR1K1Q8NGR3 316 aa20.62■□□□□ 0.89
TRIM54-201ENST00000296098 RRNAD1Q96FB5 475 aaKnown RBP20.62■□□□□ 0.89
TRIM54-201ENST00000296098 PCNX2A6NKB5 2137 aa20.62■□□□□ 0.89
TRIM54-201ENST00000296098 IL18BPO95998 194 aa20.61■□□□□ 0.89
TRIM54-201ENST00000296098 APLNRP35414 380 aa20.61■□□□□ 0.89
TRIM54-201ENST00000296098 TMEM211Q6ICI0 200 aa20.61■□□□□ 0.89
TRIM54-201ENST00000296098 TMPRSS7Q7RTY8 843 aa20.61■□□□□ 0.89
TRIM54-201ENST00000296098 BHLHE23Q8NDY6 225 aa20.61■□□□□ 0.89
TRIM54-201ENST00000296098 PIK3IP1Q96FE7 263 aa20.61■□□□□ 0.89
TRIM54-201ENST00000296098 ZNF552Q9H707 407 aaPredicted RBP20.61■□□□□ 0.89
TRIM54-201ENST00000296098 OR5AC2Q9NZP5 309 aa20.61■□□□□ 0.89
TRIM54-201ENST00000296098 A8MXK9 166 aa20.61■□□□□ 0.89
TRIM54-201ENST00000296098 CDRT15L2A8MXV6 281 aa20.61■□□□□ 0.89
TRIM54-201ENST00000296098 TEX46H3BTG2 121 aa20.61■□□□□ 0.89
TRIM54-201ENST00000296098 FGF2P09038 288 aa20.61■□□□□ 0.89
TRIM54-201ENST00000296098 NUP62P37198 522 aaPredicted RBP20.61■□□□□ 0.89
TRIM54-201ENST00000296098 CLN3Q13286 438 aa20.61■□□□□ 0.89
TRIM54-201ENST00000296098 RAB32Q13637 225 aa20.61■□□□□ 0.89
TRIM54-201ENST00000296098 FBXW9Q5XUX1 488 aa20.61■□□□□ 0.89
TRIM54-201ENST00000296098 ELP2Q6IA86 826 aa20.61■□□□□ 0.89
TRIM54-201ENST00000296098 UNQ6126/PRO20091Q6UXV3 157 aa20.61■□□□□ 0.89
TRIM54-201ENST00000296098 DEFB124Q8NES8 71 aa20.61■□□□□ 0.89
TRIM54-201ENST00000296098 STOML3Q8TAV4 291 aa20.61■□□□□ 0.89
TRIM54-201ENST00000296098 NANOS1Q8WY41 292 aaKnown RBP20.61■□□□□ 0.89
TRIM54-201ENST00000296098 PIGPP57054 158 aa20.6■□□□□ 0.89
TRIM54-201ENST00000296098 SNTB1Q13884 538 aaKnown RBP20.6■□□□□ 0.89
TRIM54-201ENST00000296098 RBM39Q14498 530 aaKnown RBP20.6■□□□□ 0.89
TRIM54-201ENST00000296098 VASH2Q86V25 355 aa20.6■□□□□ 0.89
TRIM54-201ENST00000296098 CCDC120Q96HB5 630 aa20.6■□□□□ 0.89
TRIM54-201ENST00000296098 LINC00052Q96N35 136 aa20.6■□□□□ 0.89
TRIM54-201ENST00000296098 GP6Q9HCN6 339 aa20.6■□□□□ 0.89
TRIM54-201ENST00000296098 ZNF629Q9UEG4 869 aaPredicted RBP20.6■□□□□ 0.89
TRIM54-201ENST00000296098 ZNF175Q9Y473 711 aa20.6■□□□□ 0.89
TRIM54-201ENST00000296098 ZNF732B4DXR9 585 aa20.6■□□□□ 0.89
TRIM54-201ENST00000296098 F8VVB4 439 aa20.6■□□□□ 0.89
TRIM54-201ENST00000296098 F8VWA3 439 aa20.6■□□□□ 0.89
TRIM54-201ENST00000296098 ZNF205O95201 554 aa20.6■□□□□ 0.89
TRIM54-201ENST00000296098 FTH1P19P0C7X4 201 aa20.6■□□□□ 0.89
TRIM54-201ENST00000296098 GLP1RP43220 463 aa20.6■□□□□ 0.89
TRIM54-201ENST00000296098 TNFSF10P50591 281 aa20.6■□□□□ 0.89
TRIM54-201ENST00000296098 FXYD4P59646 89 aa20.6■□□□□ 0.89
TRIM54-201ENST00000296098 FGF12P61328 243 aa20.6■□□□□ 0.89
TRIM54-201ENST00000296098 IL15RAQ13261 267 aa20.6■□□□□ 0.89
TRIM54-201ENST00000296098 ABCA11PQ4W5N1 156 aa20.6■□□□□ 0.89
TRIM54-201ENST00000296098 TMEM200AQ86VY9 491 aa20.6■□□□□ 0.89
TRIM54-201ENST00000296098 BVESQ8NE79 360 aa20.6■□□□□ 0.89
TRIM54-201ENST00000296098 SUN5Q8TC36 379 aa20.6■□□□□ 0.89
TRIM54-201ENST00000296098 GSKIPQ9P0R6 139 aa20.6■□□□□ 0.89
TRIM54-201ENST00000296098 CD300LBA8K4G0 201 aa20.59■□□□□ 0.89
TRIM54-201ENST00000296098 SCO1O75880 301 aa20.59■□□□□ 0.89
TRIM54-201ENST00000296098 FCGR2CP31995 323 aa20.59■□□□□ 0.89
TRIM54-201ENST00000296098 S100A10P60903 97 aa20.59■□□□□ 0.89
TRIM54-201ENST00000296098 PAN3Q58A45 887 aaKnown RBP20.59■□□□□ 0.89
TRIM54-201ENST00000296098 Q6ZPA2 131 aa20.59■□□□□ 0.89
TRIM54-201ENST00000296098 EIF4E3Q8N5X7 224 aaKnown RBP20.59■□□□□ 0.89
TRIM54-201ENST00000296098 BCL2L2Q92843 193 aaPredicted RBP20.59■□□□□ 0.89
TRIM54-201ENST00000296098 EXTL1Q92935 676 aa20.59■□□□□ 0.89
TRIM54-201ENST00000296098 WNT5AP41221 380 aa20.58■□□□□ 0.89
TRIM54-201ENST00000296098 PMP22Q01453 160 aa20.58■□□□□ 0.89
TRIM54-201ENST00000296098 OR5A2Q8NGI9 324 aa20.58■□□□□ 0.89
TRIM54-201ENST00000296098 AQP10Q96PS8 301 aa20.58■□□□□ 0.89
TRIM54-201ENST00000296098 HIST1H2AAQ96QV6 131 aa20.58■□□□□ 0.89
TRIM54-201ENST00000296098 NAA60Q9H7X0 242 aa20.58■□□□□ 0.89
TRIM54-201ENST00000296098 PARD6AQ9NPB6 346 aa20.58■□□□□ 0.89
TRIM54-201ENST00000296098 MSGN1A6NI15 193 aa20.58■□□□□ 0.88
TRIM54-201ENST00000296098 KRBOX1C9JBD0 128 aa20.58■□□□□ 0.88
TRIM54-201ENST00000296098 TPT1P13693 172 aaKnown RBP20.58■□□□□ 0.88
TRIM54-201ENST00000296098 IAH1Q2TAA2 248 aaPredicted RBP20.58■□□□□ 0.88
TRIM54-201ENST00000296098 FAM209AQ5JX71 171 aa20.58■□□□□ 0.88
TRIM54-201ENST00000296098 MKXQ8IYA7 352 aa20.58■□□□□ 0.88
TRIM54-201ENST00000296098 MOB3AQ96BX8 217 aa20.58■□□□□ 0.88
TRIM54-201ENST00000296098 SPAARA0A1B0GVQ0 90 aa20.57■□□□□ 0.88
TRIM54-201ENST00000296098 IFNA21P01568 189 aa20.57■□□□□ 0.88
TRIM54-201ENST00000296098 MDP1Q86V88 176 aa20.57■□□□□ 0.88
TRIM54-201ENST00000296098 BARX1Q9HBU1 254 aaPredicted RBP20.57■□□□□ 0.88
TRIM54-201ENST00000296098 DNAJB11Q9UBS4 358 aa20.57■□□□□ 0.88
TRIM54-201ENST00000296098 KCNIP3Q9Y2W7 256 aa20.57■□□□□ 0.88
TRIM54-201ENST00000296098 ZSCAN5BA6NJL1 495 aa20.56■□□□□ 0.88
TRIM54-201ENST00000296098 ANKRD30BLA7E2S9 258 aa20.56■□□□□ 0.88
TRIM54-201ENST00000296098 PRSS44E7EML9 344 aa20.56■□□□□ 0.88
TRIM54-201ENST00000296098 TRAPPC2LH3BP13 241 aa20.56■□□□□ 0.88
TRIM54-201ENST00000296098 TPD52L2O43399 206 aaKnown RBP20.56■□□□□ 0.88
TRIM54-201ENST00000296098 NAAAQ02083 359 aa20.56■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms