RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 SLC35G3Q8N808 338 aa12.55□□□□□ -0.4
SDC1-201ENST00000254351 CDCA3Q99618 268 aaPredicted RBP12.55□□□□□ -0.4
SDC1-201ENST00000254351 SLC25A31Q9H0C2 315 aa12.55□□□□□ -0.4
SDC1-201ENST00000254351 CBLN4Q9NTU7 201 aa12.55□□□□□ -0.4
SDC1-201ENST00000254351 PLA2G3Q9NZ20 509 aa12.55□□□□□ -0.4
SDC1-201ENST00000254351 ZNF407Q9C0G0 2248 aa12.55□□□□□ -0.4
SDC1-201ENST00000254351 CRYM-AS1A6NIL9 109 aa12.55□□□□□ -0.4
SDC1-201ENST00000254351 PTBP3O95758 552 aaKnown RBP12.55□□□□□ -0.4
SDC1-201ENST00000254351 EFNA3P52797 238 aa12.55□□□□□ -0.4
SDC1-201ENST00000254351 KCNK17Q96T54 332 aa12.55□□□□□ -0.4
SDC1-201ENST00000254351 GPR173Q9NS66 373 aa12.55□□□□□ -0.4
SDC1-201ENST00000254351 IGSF23A1L1A6 192 aa12.54□□□□□ -0.4
SDC1-201ENST00000254351 TLCD2A6NGC4 264 aa12.54□□□□□ -0.4
SDC1-201ENST00000254351 K7N7A8 449 aa12.54□□□□□ -0.4
SDC1-201ENST00000254351 ZNF154Q13106 437 aa12.54□□□□□ -0.4
SDC1-201ENST00000254351 PRSS8Q16651 343 aa12.54□□□□□ -0.4
SDC1-201ENST00000254351 HIKESHIQ53FT3 197 aa12.54□□□□□ -0.4
SDC1-201ENST00000254351 SPSB3Q6PJ21 355 aa12.54□□□□□ -0.4
SDC1-201ENST00000254351 SLC22A25Q6T423 547 aa12.54□□□□□ -0.4
SDC1-201ENST00000254351 H1FNTQ75WM6 255 aaPredicted RBP12.54□□□□□ -0.4
SDC1-201ENST00000254351 SLC22A18ASQ8N1D0 253 aa12.54□□□□□ -0.4
SDC1-201ENST00000254351 OR2AE1Q8NHA4 323 aa12.54□□□□□ -0.4
SDC1-201ENST00000254351 FGF14Q92915 247 aa12.54□□□□□ -0.4
SDC1-201ENST00000254351 NAT6Q93015 286 aa12.54□□□□□ -0.4
SDC1-201ENST00000254351 CABLES2Q9BTV7 478 aa12.54□□□□□ -0.4
SDC1-201ENST00000254351 SLC2A9Q9NRM0 540 aa12.54□□□□□ -0.4
SDC1-201ENST00000254351 TUBD1Q9UJT1 453 aa12.54□□□□□ -0.4
SDC1-201ENST00000254351 FTCDNL1E5RQL4 147 aa12.54□□□□□ -0.4
SDC1-201ENST00000254351 HSPB6O14558 160 aa12.54□□□□□ -0.4
SDC1-201ENST00000254351 THEGLP0DJG4 465 aa12.54□□□□□ -0.4
SDC1-201ENST00000254351 ERVS71-1P61550 626 aa12.54□□□□□ -0.4
SDC1-201ENST00000254351 GABREP78334 506 aa12.54□□□□□ -0.4
SDC1-201ENST00000254351 ICAM4Q14773 271 aa12.54□□□□□ -0.4
SDC1-201ENST00000254351 IZUMO4Q1ZYL8 232 aa12.54□□□□□ -0.4
SDC1-201ENST00000254351 PARM1Q6UWI2 310 aa12.54□□□□□ -0.4
SDC1-201ENST00000254351 PLPP5Q8NEB5 264 aa12.54□□□□□ -0.4
SDC1-201ENST00000254351 IGHV5-51A0A0C4DH38 117 aa12.53□□□□□ -0.4
SDC1-201ENST00000254351 SHISA7A6NL88 538 aa12.53□□□□□ -0.4
SDC1-201ENST00000254351 H3BMH7 237 aa12.53□□□□□ -0.4
SDC1-201ENST00000254351 PNLIPP16233 465 aa12.53□□□□□ -0.4
SDC1-201ENST00000254351 GRINAQ7Z429 371 aa12.53□□□□□ -0.4
SDC1-201ENST00000254351 CMTM1Q8IZ96 169 aa12.53□□□□□ -0.4
SDC1-201ENST00000254351 OR14L1PQ8NHC6 308 aa12.53□□□□□ -0.4
SDC1-201ENST00000254351 TMEM37Q8WXS4 190 aa12.53□□□□□ -0.4
SDC1-201ENST00000254351 LRFN1Q9P244 771 aa12.53□□□□□ -0.4
SDC1-201ENST00000254351 ANXA10Q9UJ72 324 aa12.53□□□□□ -0.4
SDC1-201ENST00000254351 PIGLQ9Y2B2 252 aa12.53□□□□□ -0.4
SDC1-201ENST00000254351 NCOA6Q14686 2063 aaPredicted RBP12.53□□□□□ -0.4
SDC1-201ENST00000254351 A6NNC1 897 aa12.53□□□□□ -0.4
SDC1-201ENST00000254351 MSTNO14793 375 aa12.53□□□□□ -0.4
SDC1-201ENST00000254351 SEMA4FO95754 770 aa12.53□□□□□ -0.4
SDC1-201ENST00000254351 GZMBP10144 247 aa12.53□□□□□ -0.4
SDC1-201ENST00000254351 HNRNPA2B1P22626 353 aaKnown RBP12.53□□□□□ -0.4
SDC1-201ENST00000254351 CD200P41217 278 aa12.53□□□□□ -0.4
SDC1-201ENST00000254351 HSD17B7P56937 341 aa12.53□□□□□ -0.4
SDC1-201ENST00000254351 MLF1P58340 268 aa12.53□□□□□ -0.4
SDC1-201ENST00000254351 MRPS34P82930 218 aaKnown RBP12.53□□□□□ -0.4
SDC1-201ENST00000254351 P2RY6Q15077 328 aa12.53□□□□□ -0.4
SDC1-201ENST00000254351 BATFQ16520 125 aa12.53□□□□□ -0.4
SDC1-201ENST00000254351 LGI3Q8N145 548 aa12.53□□□□□ -0.4
SDC1-201ENST00000254351 OR2C3Q8N628 320 aa12.53□□□□□ -0.4
SDC1-201ENST00000254351 COMMD1Q8N668 190 aa12.53□□□□□ -0.4
SDC1-201ENST00000254351 ADIPOR1Q96A54 375 aa12.53□□□□□ -0.4
SDC1-201ENST00000254351 TP53RKQ96S44 253 aa12.53□□□□□ -0.4
SDC1-201ENST00000254351 ZNF25P17030 456 aaPredicted RBP12.53□□□□□ -0.4
SDC1-201ENST00000254351 CD33P20138 364 aa12.53□□□□□ -0.4
SDC1-201ENST00000254351 DAP3P51398 398 aaKnown RBP12.53□□□□□ -0.4
SDC1-201ENST00000254351 DYNLT3P51808 116 aa12.53□□□□□ -0.4
SDC1-201ENST00000254351 CLDN17P56750 224 aa12.53□□□□□ -0.4
SDC1-201ENST00000254351 SPCS3P61009 180 aa12.53□□□□□ -0.4
SDC1-201ENST00000254351 HSD11B2P80365 405 aa12.53□□□□□ -0.4
SDC1-201ENST00000254351 SLC38A9Q8NBW4 561 aa12.53□□□□□ -0.4
SDC1-201ENST00000254351 SLC46A1Q96NT5 459 aa12.53□□□□□ -0.4
SDC1-201ENST00000254351 NAA60Q9H7X0 242 aa12.53□□□□□ -0.4
SDC1-201ENST00000254351 KLHL13Q9P2N7 655 aa12.53□□□□□ -0.4
SDC1-201ENST00000254351 STRAPQ9Y3F4 350 aaKnown RBP12.53□□□□□ -0.4
SDC1-201ENST00000254351 CEACAM18A8MTB9 384 aa12.52□□□□□ -0.4
SDC1-201ENST00000254351 NPIPB7O75200 414 aa12.52□□□□□ -0.4
SDC1-201ENST00000254351 NTSR1P30989 418 aa12.52□□□□□ -0.4
SDC1-201ENST00000254351 MTCP1P56278 107 aa12.52□□□□□ -0.4
SDC1-201ENST00000254351 HLA-DRB3P79483 266 aa12.52□□□□□ -0.4
SDC1-201ENST00000254351 FOXF1Q12946 379 aa12.52□□□□□ -0.4
SDC1-201ENST00000254351 TMEM187Q14656 261 aa12.52□□□□□ -0.4
SDC1-201ENST00000254351 PIGYQ3MUY2 71 aa12.52□□□□□ -0.4
SDC1-201ENST00000254351 GPR157Q5UAW9 335 aa12.52□□□□□ -0.4
SDC1-201ENST00000254351 C1orf87Q8N0U7 546 aa12.52□□□□□ -0.4
SDC1-201ENST00000254351 ARHGEF39Q8N4T4 335 aa12.52□□□□□ -0.4
SDC1-201ENST00000254351 GPR87Q9BY21 358 aa12.52□□□□□ -0.4
SDC1-201ENST00000254351 ZNF665Q9H7R5 613 aa12.52□□□□□ -0.4
SDC1-201ENST00000254351 BCO1Q9HAY6 547 aa12.52□□□□□ -0.4
SDC1-201ENST00000254351 IL17BQ9UHF5 180 aa12.52□□□□□ -0.4
SDC1-201ENST00000254351 TNFP01375 233 aa12.52□□□□□ -0.41
SDC1-201ENST00000254351 OR4A8P0C604 315 aa12.52□□□□□ -0.41
SDC1-201ENST00000254351 COX5BP10606 129 aa12.52□□□□□ -0.41
SDC1-201ENST00000254351 DUSP1P28562 367 aa12.52□□□□□ -0.41
SDC1-201ENST00000254351 GLIPR1P48060 266 aa12.52□□□□□ -0.41
SDC1-201ENST00000254351 VAMP2P63027 116 aa12.52□□□□□ -0.41
SDC1-201ENST00000254351 THNSL2Q86YJ6 484 aa12.52□□□□□ -0.41
SDC1-201ENST00000254351 ZNF721Q8TF20 911 aa12.52□□□□□ -0.41
SDC1-201ENST00000254351 PRO3102Q9H379 93 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms