RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 FBXW12Q6X9E4 464 aa16.22■□□□□ 0.19
CPSF3-201ENST00000238112 ZNF100Q8IYN0 542 aa16.22■□□□□ 0.19
CPSF3-201ENST00000238112 OR2H1Q9GZK4 316 aa16.22■□□□□ 0.19
CPSF3-201ENST00000238112 ARV1Q9H2C2 271 aa16.22■□□□□ 0.19
CPSF3-201ENST00000238112 A0A0G2JMM0 328 aa16.22■□□□□ 0.19
CPSF3-201ENST00000238112 hCG_38984A0A1B0GV85 526 aa16.22■□□□□ 0.19
CPSF3-201ENST00000238112 A0A1W2PPB8 328 aa16.22■□□□□ 0.19
CPSF3-201ENST00000238112 A0A1W2PRS3 328 aa16.22■□□□□ 0.19
CPSF3-201ENST00000238112 MEX3AA1L020 520 aaKnown RBP16.22■□□□□ 0.19
CPSF3-201ENST00000238112 KIR3DP1A8MWS1 328 aa16.22■□□□□ 0.19
CPSF3-201ENST00000238112 PHF1O43189 567 aaPredicted RBP16.22■□□□□ 0.19
CPSF3-201ENST00000238112 RGS19P49795 217 aa16.22■□□□□ 0.19
CPSF3-201ENST00000238112 ZNF92Q03936 586 aa16.22■□□□□ 0.19
CPSF3-201ENST00000238112 CEACAM16Q2WEN9 425 aa16.22■□□□□ 0.19
CPSF3-201ENST00000238112 KRTAP27-1Q3LI81 207 aa16.22■□□□□ 0.19
CPSF3-201ENST00000238112 MIDNQ504T8 468 aa16.22■□□□□ 0.19
CPSF3-201ENST00000238112 PMS2CLQ68D20 193 aa16.22■□□□□ 0.19
CPSF3-201ENST00000238112 GGNQ86UU5 652 aa16.22■□□□□ 0.19
CPSF3-201ENST00000238112 CCDC71LQ8N9Z2 235 aa16.22■□□□□ 0.19
CPSF3-201ENST00000238112 SECTM1Q8WVN6 248 aa16.22■□□□□ 0.19
CPSF3-201ENST00000238112 PIGCQ92535 297 aa16.22■□□□□ 0.19
CPSF3-201ENST00000238112 MOB3AQ96BX8 217 aa16.22■□□□□ 0.19
CPSF3-201ENST00000238112 BSCL2Q96G97 398 aaPredicted RBP16.22■□□□□ 0.19
CPSF3-201ENST00000238112 WNT5BQ9H1J7 359 aa16.22■□□□□ 0.19
CPSF3-201ENST00000238112 LUZP4Q9P127 313 aa16.22■□□□□ 0.19
CPSF3-201ENST00000238112 NME2P1O60361 137 aa16.21■□□□□ 0.19
CPSF3-201ENST00000238112 P2RY1P47900 373 aa16.21■□□□□ 0.19
CPSF3-201ENST00000238112 IL13RA2Q14627 380 aa16.21■□□□□ 0.19
CPSF3-201ENST00000238112 PDCD1Q15116 288 aa16.21■□□□□ 0.19
CPSF3-201ENST00000238112 SHEQ5VZ18 495 aa16.21■□□□□ 0.19
CPSF3-201ENST00000238112 COMMD1Q8N668 190 aa16.21■□□□□ 0.19
CPSF3-201ENST00000238112 OR52M1Q8NGK5 317 aa16.21■□□□□ 0.19
CPSF3-201ENST00000238112 MSI2Q96DH6 328 aaKnown RBP16.21■□□□□ 0.19
CPSF3-201ENST00000238112 ZNF442Q9H7R0 627 aa16.21■□□□□ 0.19
CPSF3-201ENST00000238112 CACFD1Q9UGQ2 172 aa16.21■□□□□ 0.19
CPSF3-201ENST00000238112 STARD10Q9Y365 291 aa16.21■□□□□ 0.19
CPSF3-201ENST00000238112 ST8SIA3O43173 380 aa16.2■□□□□ 0.18
CPSF3-201ENST00000238112 DANCRP0C864 163 aa16.2■□□□□ 0.18
CPSF3-201ENST00000238112 CAMLGP49069 296 aa16.2■□□□□ 0.18
CPSF3-201ENST00000238112 UCP3P55916 312 aa16.2■□□□□ 0.18
CPSF3-201ENST00000238112 TRA2AQ13595 282 aaKnown RBP eCLIP16.2■□□□□ 0.18
CPSF3-201ENST00000238112 OR11L1Q8NGX0 322 aa16.2■□□□□ 0.18
CPSF3-201ENST00000238112 C2CD4CQ8TF44 421 aa16.2■□□□□ 0.18
CPSF3-201ENST00000238112 CNTRLQ7Z7A1 2325 aa16.2■□□□□ 0.18
CPSF3-201ENST00000238112 SDK2Q58EX2 2172 aa16.2■□□□□ 0.18
CPSF3-201ENST00000238112 ZNF816-ZNF321PA0A0X1KG74 233 aa16.2■□□□□ 0.18
CPSF3-201ENST00000238112 ZNF98A6NK75 572 aa16.2■□□□□ 0.18
CPSF3-201ENST00000238112 YKT6O15498 198 aa16.2■□□□□ 0.18
CPSF3-201ENST00000238112 SNCAP37840 140 aa16.2■□□□□ 0.18
CPSF3-201ENST00000238112 RBM11P57052 281 aaKnown RBP16.2■□□□□ 0.18
CPSF3-201ENST00000238112 OR8B8Q15620 311 aa16.2■□□□□ 0.18
CPSF3-201ENST00000238112 ZFP82Q8N141 532 aa16.2■□□□□ 0.18
CPSF3-201ENST00000238112 HLA-CQ95604 372 aa16.2■□□□□ 0.18
CPSF3-201ENST00000238112 TECTBQ96PL2 329 aa16.2■□□□□ 0.18
CPSF3-201ENST00000238112 GINS3Q9BRX5 216 aa16.2■□□□□ 0.18
CPSF3-201ENST00000238112 WFDC1Q9HC57 220 aa16.2■□□□□ 0.18
CPSF3-201ENST00000238112 TRAPPC6AO75865 159 aa16.19■□□□□ 0.18
CPSF3-201ENST00000238112 PRH1P02810 166 aa16.19■□□□□ 0.18
CPSF3-201ENST00000238112 AADACP22760 399 aa16.19■□□□□ 0.18
CPSF3-201ENST00000238112 TMEM211Q6ICI0 200 aa16.19■□□□□ 0.18
CPSF3-201ENST00000238112 ZC3HAV1Q7Z2W4 902 aaKnown RBP16.19■□□□□ 0.18
CPSF3-201ENST00000238112 DMBX1Q8NFW5 382 aa16.19■□□□□ 0.18
CPSF3-201ENST00000238112 OR10D3Q8NH80 312 aa16.19■□□□□ 0.18
CPSF3-201ENST00000238112 OR2V1Q8NHB1 315 aa16.19■□□□□ 0.18
CPSF3-201ENST00000238112 TMED3Q9Y3Q3 217 aa16.19■□□□□ 0.18
CPSF3-201ENST00000238112 KIAA1549Q9HCM3 1950 aa16.19■□□□□ 0.18
CPSF3-201ENST00000238112 COLCA2A8K830 154 aa16.19■□□□□ 0.18
CPSF3-201ENST00000238112 OR7C1O76099 320 aaPredicted RBP16.19■□□□□ 0.18
CPSF3-201ENST00000238112 FUT3P21217 361 aa16.19■□□□□ 0.18
CPSF3-201ENST00000238112 GNMTQ14749 295 aa16.19■□□□□ 0.18
CPSF3-201ENST00000238112 RIPPLY2Q5TAB7 128 aa16.19■□□□□ 0.18
CPSF3-201ENST00000238112 ABLIM2Q6H8Q1 611 aa16.19■□□□□ 0.18
CPSF3-201ENST00000238112 FGFBP3Q8TAT2 258 aa16.19■□□□□ 0.18
CPSF3-201ENST00000238112 RSRP1Q9BUV0 290 aa16.19■□□□□ 0.18
CPSF3-201ENST00000238112 RPS10P5Q9NQ39 176 aa16.19■□□□□ 0.18
CPSF3-201ENST00000238112 PARPBPQ9NWS1 579 aa16.19■□□□□ 0.18
CPSF3-201ENST00000238112 NTN3O00634 580 aaPredicted RBP16.18■□□□□ 0.18
CPSF3-201ENST00000238112 GUK1Q16774 197 aa16.18■□□□□ 0.18
CPSF3-201ENST00000238112 MEX3BQ6ZN04 569 aaKnown RBP16.18■□□□□ 0.18
CPSF3-201ENST00000238112 C15orf54Q8N8G6 183 aa16.18■□□□□ 0.18
CPSF3-201ENST00000238112 C14orf79Q96F83 325 aa16.18■□□□□ 0.18
CPSF3-201ENST00000238112 EIF5A2Q9GZV4 153 aaKnown RBP16.18■□□□□ 0.18
CPSF3-201ENST00000238112 ESRP2Q9H6T0 727 aaKnown RBP16.18■□□□□ 0.18
CPSF3-201ENST00000238112 GPR35Q9HC97 309 aa16.18■□□□□ 0.18
CPSF3-201ENST00000238112 RCL1Q9Y2P8 373 aaKnown RBP16.18■□□□□ 0.18
CPSF3-201ENST00000238112 RFPL3SP0C7P2 107 aa16.18■□□□□ 0.18
CPSF3-201ENST00000238112 KCNJ3P48549 501 aa16.18■□□□□ 0.18
CPSF3-201ENST00000238112 RAB5CP51148 216 aa16.18■□□□□ 0.18
CPSF3-201ENST00000238112 WIPI1Q5MNZ9 446 aaPredicted RBP16.18■□□□□ 0.18
CPSF3-201ENST00000238112 SLC35G3Q8N808 338 aa16.18■□□□□ 0.18
CPSF3-201ENST00000238112 ZNF611Q8N823 705 aa16.18■□□□□ 0.18
CPSF3-201ENST00000238112 C12orf57Q99622 126 aa16.18■□□□□ 0.18
CPSF3-201ENST00000238112 C19orf12Q9NSK7 152 aa16.18■□□□□ 0.18
CPSF3-201ENST00000238112 ZDHHC8Q9ULC8 765 aa16.18■□□□□ 0.18
CPSF3-201ENST00000238112 WDFY3Q8IZQ1 3526 aa16.17■□□□□ 0.18
CPSF3-201ENST00000238112 PQLC2LA1A4F0 135 aa16.17■□□□□ 0.18
CPSF3-201ENST00000238112 PPYP01298 95 aa16.17■□□□□ 0.18
CPSF3-201ENST00000238112 GLAP06280 429 aa16.17■□□□□ 0.18
CPSF3-201ENST00000238112 PAX6P26367 422 aa16.17■□□□□ 0.18
CPSF3-201ENST00000238112 RAB5BP61020 215 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms