RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 SLC25A30Q5SVS4 291 aa12.01□□□□□ -0.49
SF3A1-201ENST00000215793 FAM109BQ6ICB4 259 aaPredicted RBP12.01□□□□□ -0.49
SF3A1-201ENST00000215793 OR1L4Q8NGR5 311 aa12.01□□□□□ -0.49
SF3A1-201ENST00000215793 OR4S2Q8NH73 311 aa12.01□□□□□ -0.49
SF3A1-201ENST00000215793 NUP214P35658 2090 aaPredicted RBP12.01□□□□□ -0.49
SF3A1-201ENST00000215793 PAPPA2Q9BXP8 1791 aa12.01□□□□□ -0.49
SF3A1-201ENST00000215793 KIF13AQ9H1H9 1805 aa12□□□□□ -0.49
SF3A1-201ENST00000215793 B3GALNT1O75752 331 aa12□□□□□ -0.49
SF3A1-201ENST00000215793 GNG4P50150 75 aa12□□□□□ -0.49
SF3A1-201ENST00000215793 HNRNPA3P51991 378 aaKnown RBP12□□□□□ -0.49
SF3A1-201ENST00000215793 SPCS3P61009 180 aa12□□□□□ -0.49
SF3A1-201ENST00000215793 C11orf42Q8N5U0 333 aa12□□□□□ -0.49
SF3A1-201ENST00000215793 TMEM37Q8WXS4 190 aa12□□□□□ -0.49
SF3A1-201ENST00000215793 PECRQ9BY49 303 aa12□□□□□ -0.49
SF3A1-201ENST00000215793 ZNF107Q9UII5 783 aaPredicted RBP12□□□□□ -0.49
SF3A1-201ENST00000215793 NINQ8N4C6 2090 aa12□□□□□ -0.49
SF3A1-201ENST00000215793 TRBV5-3A0A0A0MS03 114 aa12□□□□□ -0.49
SF3A1-201ENST00000215793 RGS13O14921 159 aa12□□□□□ -0.49
SF3A1-201ENST00000215793 PPIHO43447 177 aaKnown RBP12□□□□□ -0.49
SF3A1-201ENST00000215793 OR2J3O76001 311 aa12□□□□□ -0.49
SF3A1-201ENST00000215793 TMIGD3P0DMS9 266 aaPredicted RBP12□□□□□ -0.49
SF3A1-201ENST00000215793 CD226Q15762 336 aa12□□□□□ -0.49
SF3A1-201ENST00000215793 IQCJQ1A5X6 159 aa12□□□□□ -0.49
SF3A1-201ENST00000215793 CA5BP1Q8WTZ4 195 aa12□□□□□ -0.49
SF3A1-201ENST00000215793 FLRT3Q9NZU0 649 aa12□□□□□ -0.49
SF3A1-201ENST00000215793 D2HGDHQ8N465 521 aa12□□□□□ -0.49
SF3A1-201ENST00000215793 RAB1CQ92928 201 aa12□□□□□ -0.49
SF3A1-201ENST00000215793 GRAMD2BQ96HH9 432 aa12□□□□□ -0.49
SF3A1-201ENST00000215793 VAMP8Q9BV40 100 aa12□□□□□ -0.49
SF3A1-201ENST00000215793 SLC52A3Q9NQ40 469 aa12□□□□□ -0.49
SF3A1-201ENST00000215793 SCN7AQ01118 1682 aa12□□□□□ -0.49
SF3A1-201ENST00000215793 HYAL3O43820 417 aaPredicted RBP12□□□□□ -0.49
SF3A1-201ENST00000215793 AMTP48728 403 aa12□□□□□ -0.49
SF3A1-201ENST00000215793 MESTQ5EB52 335 aa12□□□□□ -0.49
SF3A1-201ENST00000215793 MYPOPQ86VE0 399 aaPredicted RBP12□□□□□ -0.49
SF3A1-201ENST00000215793 DEFB124Q8NES8 71 aa12□□□□□ -0.49
SF3A1-201ENST00000215793 MRGPRDQ8TDS7 321 aa12□□□□□ -0.49
SF3A1-201ENST00000215793 ZNF737O75373 536 aa11.99□□□□□ -0.49
SF3A1-201ENST00000215793 PATE4P0C8F1 98 aa11.99□□□□□ -0.49
SF3A1-201ENST00000215793 CD200P41217 278 aa11.99□□□□□ -0.49
SF3A1-201ENST00000215793 GALR1P47211 349 aa11.99□□□□□ -0.49
SF3A1-201ENST00000215793 TRIP6Q15654 476 aaKnown RBP11.99□□□□□ -0.49
SF3A1-201ENST00000215793 FNDC7Q5VTL7 733 aa11.99□□□□□ -0.49
SF3A1-201ENST00000215793 GTF2H5Q6ZYL4 71 aa11.99□□□□□ -0.49
SF3A1-201ENST00000215793 OR10G4Q8NGN3 311 aa11.99□□□□□ -0.49
SF3A1-201ENST00000215793 OR10G9Q8NGN4 311 aa11.99□□□□□ -0.49
SF3A1-201ENST00000215793 OR10G7Q8NGN6 311 aa11.99□□□□□ -0.49
SF3A1-201ENST00000215793 SH2D2AQ9NP31 389 aa11.99□□□□□ -0.49
SF3A1-201ENST00000215793 GPR27Q9NS67 375 aa11.99□□□□□ -0.49
SF3A1-201ENST00000215793 SPAG17Q6Q759 2223 aa11.99□□□□□ -0.49
SF3A1-201ENST00000215793 ACTL6AO96019 429 aa11.99□□□□□ -0.49
SF3A1-201ENST00000215793 CST2P09228 141 aa11.99□□□□□ -0.49
SF3A1-201ENST00000215793 VDAC1P21796 283 aa11.99□□□□□ -0.49
SF3A1-201ENST00000215793 GVQW1Q8N7I0 195 aa11.99□□□□□ -0.49
SF3A1-201ENST00000215793 OR2M7Q8NG81 312 aa11.99□□□□□ -0.49
SF3A1-201ENST00000215793 PTP4A1Q93096 173 aa11.99□□□□□ -0.49
SF3A1-201ENST00000215793 RNF2Q99496 336 aa11.99□□□□□ -0.49
SF3A1-201ENST00000215793 TCFL5Q9UL49 500 aa11.99□□□□□ -0.49
SF3A1-201ENST00000215793 AMDHD2Q9Y303 409 aa11.99□□□□□ -0.49
SF3A1-201ENST00000215793 MMP24Q9Y5R2 645 aa11.99□□□□□ -0.49
SF3A1-201ENST00000215793 SOX15O60248 233 aa11.99□□□□□ -0.49
SF3A1-201ENST00000215793 TMEM33P57088 247 aa11.99□□□□□ -0.49
SF3A1-201ENST00000215793 ETFDHQ16134 617 aa11.99□□□□□ -0.49
SF3A1-201ENST00000215793 TIPARPQ7Z3E1 657 aaKnown RBP11.99□□□□□ -0.49
SF3A1-201ENST00000215793 RPS4Y2Q8TD47 263 aa11.99□□□□□ -0.49
SF3A1-201ENST00000215793 VPS25Q9BRG1 176 aa11.99□□□□□ -0.49
SF3A1-201ENST00000215793 NXF2Q9GZY0 626 aaKnown RBP11.99□□□□□ -0.49
SF3A1-201ENST00000215793 ICE1Q9Y2F5 2266 aa11.99□□□□□ -0.49
SF3A1-201ENST00000215793 TRAV38-1A0A0B4J264 116 aa11.99□□□□□ -0.49
SF3A1-201ENST00000215793 PMCHP20382 165 aa11.99□□□□□ -0.49
SF3A1-201ENST00000215793 SLC2A8Q9NY64 477 aa11.99□□□□□ -0.49
SF3A1-201ENST00000215793 PCOLCE2Q9UKZ9 415 aa11.99□□□□□ -0.49
SF3A1-201ENST00000215793 FZR1Q9UM11 496 aa11.99□□□□□ -0.49
SF3A1-201ENST00000215793 MYO5AQ9Y4I1 1855 aaKnown RBP11.99□□□□□ -0.49
SF3A1-201ENST00000215793 SEC16AO15027 2179 aa11.98□□□□□ -0.49
SF3A1-201ENST00000215793 TRDCB7Z8K6 153 aa11.98□□□□□ -0.49
SF3A1-201ENST00000215793 TOX4O94842 621 aa11.98□□□□□ -0.49
SF3A1-201ENST00000215793 FABP4P15090 132 aa11.98□□□□□ -0.49
SF3A1-201ENST00000215793 HLA-GP17693 338 aa11.98□□□□□ -0.49
SF3A1-201ENST00000215793 PNRC1Q12796 327 aaPredicted RBP11.98□□□□□ -0.49
SF3A1-201ENST00000215793 RNF151Q2KHN1 245 aa11.98□□□□□ -0.49
SF3A1-201ENST00000215793 RAB1BQ9H0U4 201 aa11.98□□□□□ -0.49
SF3A1-201ENST00000215793 OR1A1Q9P1Q5 309 aa11.98□□□□□ -0.49
SF3A1-201ENST00000215793 CCL27Q9Y4X3 112 aa11.98□□□□□ -0.49
SF3A1-201ENST00000215793 FFAR1O14842 300 aa11.98□□□□□ -0.49
SF3A1-201ENST00000215793 GATCO43716 136 aaKnown RBP11.98□□□□□ -0.49
SF3A1-201ENST00000215793 SYNGR2O43760 224 aa11.98□□□□□ -0.49
SF3A1-201ENST00000215793 PNPP00491 289 aa11.98□□□□□ -0.49
SF3A1-201ENST00000215793 SDHBP21912 280 aa11.98□□□□□ -0.49
SF3A1-201ENST00000215793 HES3Q5TGS1 186 aa11.98□□□□□ -0.49
SF3A1-201ENST00000215793 FRRS1LQ9P0K9 344 aa11.98□□□□□ -0.49
SF3A1-201ENST00000215793 STARD10Q9Y365 291 aa11.98□□□□□ -0.49
SF3A1-201ENST00000215793 C3orf80F5H4A9 247 aa11.98□□□□□ -0.49
SF3A1-201ENST00000215793 GYPAP02724 150 aa11.98□□□□□ -0.49
SF3A1-201ENST00000215793 CCL2P13500 99 aa11.98□□□□□ -0.49
SF3A1-201ENST00000215793 HIST1H3AP68431 136 aa11.98□□□□□ -0.49
SF3A1-201ENST00000215793 MRPS11P82912 194 aaKnown RBP11.98□□□□□ -0.49
SF3A1-201ENST00000215793 GAB4Q2WGN9 574 aa11.98□□□□□ -0.49
SF3A1-201ENST00000215793 CT55Q8WUE5 264 aa11.98□□□□□ -0.49
SF3A1-201ENST00000215793 CA10Q9NS85 328 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms