RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 MAPRE2Q15555 327 aa0□□□□□ -2.41
VPS35-212ENST00000640313 TOMM34Q15785 309 aaPredicted RBP0□□□□□ -2.41
VPS35-212ENST00000640313 Q499Y3 187 aa0□□□□□ -2.41
VPS35-212ENST00000640313 CDNFQ49AH0 187 aa0□□□□□ -2.41
VPS35-212ENST00000640313 FAM229BQ4G0N7 80 aa0□□□□□ -2.41
VPS35-212ENST00000640313 C10orf91Q5T1B1 145 aa0□□□□□ -2.41
VPS35-212ENST00000640313 CARD17Q5XLA6 110 aa0□□□□□ -2.41
VPS35-212ENST00000640313 GLYATQ6IB77 296 aa0□□□□□ -2.41
VPS35-212ENST00000640313 LAIR2Q6ISS4 152 aa0□□□□□ -2.41
VPS35-212ENST00000640313 RWDD4Q6NW29 188 aaKnown RBP0□□□□□ -2.41
VPS35-212ENST00000640313 NOXRED1Q6NXP6 359 aa0□□□□□ -2.41
VPS35-212ENST00000640313 TMEM53Q6P2H8 277 aa0□□□□□ -2.41
VPS35-212ENST00000640313 EPGNQ6UW88 154 aa0□□□□□ -2.41
VPS35-212ENST00000640313 CLEC19AQ6UXS0 136 aa0□□□□□ -2.41
VPS35-212ENST00000640313 ASCL4Q6XD76 172 aa0□□□□□ -2.41
VPS35-212ENST00000640313 TPGS1Q6ZTW0 290 aa0□□□□□ -2.41
VPS35-212ENST00000640313 MROH5Q6ZUA9 1318 aa0□□□□□ -2.41
VPS35-212ENST00000640313 PHLPP2Q6ZVD8 1323 aa0□□□□□ -2.41
VPS35-212ENST00000640313 FAM231DQ6ZW35 169 aa0□□□□□ -2.41
VPS35-212ENST00000640313 NDUFAF7Q7L592 441 aa0□□□□□ -2.41
VPS35-212ENST00000640313 TICRRQ7Z2Z1 1910 aa0□□□□□ -2.41
VPS35-212ENST00000640313 LYZL2Q7Z4W2 148 aa0□□□□□ -2.41
VPS35-212ENST00000640313 VTCN1Q7Z7D3 282 aa0□□□□□ -2.41
VPS35-212ENST00000640313 DPPA2Q7Z7J5 298 aa0□□□□□ -2.41
VPS35-212ENST00000640313 CPNE9Q8IYJ1 553 aa0□□□□□ -2.41
VPS35-212ENST00000640313 SLC7A5P1Q8MH63 180 aa0□□□□□ -2.41
VPS35-212ENST00000640313 GABRG1Q8N1C3 465 aa0□□□□□ -2.41
VPS35-212ENST00000640313 GAPTQ8N292 157 aa0□□□□□ -2.41
VPS35-212ENST00000640313 BBS5Q8N3I7 341 aa0□□□□□ -2.41
VPS35-212ENST00000640313 DEFB119Q8N690 84 aa0□□□□□ -2.41
VPS35-212ENST00000640313 ARL6IP6Q8N6S5 226 aa0□□□□□ -2.41
VPS35-212ENST00000640313 GPATCH11Q8N954 259 aa0□□□□□ -2.41
VPS35-212ENST00000640313 CYB561A3Q8NBI2 242 aa0□□□□□ -2.41
VPS35-212ENST00000640313 ZNF738Q8NE65 137 aa0□□□□□ -2.41
VPS35-212ENST00000640313 OR10P1Q8NGE3 313 aa0□□□□□ -2.41
VPS35-212ENST00000640313 OR8A1Q8NGG7 326 aa0□□□□□ -2.41
VPS35-212ENST00000640313 OR1S1Q8NH92 325 aa0□□□□□ -2.41
VPS35-212ENST00000640313 ZNF563Q8TA94 476 aa0□□□□□ -2.41
VPS35-212ENST00000640313 ITFG1Q8TB96 612 aa0□□□□□ -2.41
VPS35-212ENST00000640313 UBA3Q8TBC4 463 aa0□□□□□ -2.41
VPS35-212ENST00000640313 SPACA4Q8TDM5 124 aa0□□□□□ -2.41
VPS35-212ENST00000640313 TSEN15Q8WW01 171 aaKnown RBP0□□□□□ -2.41
VPS35-212ENST00000640313 OR8D1Q8WZ84 308 aa0□□□□□ -2.41
VPS35-212ENST00000640313 GBF1Q92538 1859 aa0□□□□□ -2.41
VPS35-212ENST00000640313 NUP205Q92621 2012 aa0□□□□□ -2.41
VPS35-212ENST00000640313 TPD52L3Q96J77 140 aa0□□□□□ -2.41
VPS35-212ENST00000640313 DNAJC30Q96LL9 226 aa0□□□□□ -2.41
VPS35-212ENST00000640313 OPALINQ96PE5 141 aa0□□□□□ -2.41
VPS35-212ENST00000640313 OR2A7Q96R45 310 aa0□□□□□ -2.41
VPS35-212ENST00000640313 GABRG3Q99928 467 aa0□□□□□ -2.41
VPS35-212ENST00000640313 CCDC77Q9BR77 488 aa0□□□□□ -2.41
VPS35-212ENST00000640313 ZNF251Q9BRH9 671 aa0□□□□□ -2.41
VPS35-212ENST00000640313 MTG1Q9BT17 334 aaPredicted RBP0□□□□□ -2.41
VPS35-212ENST00000640313 TSSK6Q9BXA6 273 aa0□□□□□ -2.41
VPS35-212ENST00000640313 API5Q9BZZ5 524 aaKnown RBP0□□□□□ -2.41
VPS35-212ENST00000640313 PKIBQ9C010 78 aa0□□□□□ -2.41
VPS35-212ENST00000640313 ZNF436Q9C0F3 470 aaPredicted RBP0□□□□□ -2.41
VPS35-212ENST00000640313 AICDAQ9GZX7 198 aa0□□□□□ -2.41
VPS35-212ENST00000640313 CHRNA10Q9GZZ6 450 aa0□□□□□ -2.41
VPS35-212ENST00000640313 DEFB129Q9H1M3 183 aa0□□□□□ -2.41
VPS35-212ENST00000640313 OR2AG1Q9H205 316 aa0□□□□□ -2.41
VPS35-212ENST00000640313 PORCNQ9H237 461 aa0□□□□□ -2.41
VPS35-212ENST00000640313 C16orf95Q9H693 158 aa0□□□□□ -2.41
VPS35-212ENST00000640313 AUNIPQ9H7T9 357 aa0□□□□□ -2.41
VPS35-212ENST00000640313 GEMIN7Q9H840 131 aaKnown RBP0□□□□□ -2.41
VPS35-212ENST00000640313 TUBA4BQ9H853 241 aa0□□□□□ -2.41
VPS35-212ENST00000640313 VPS37BQ9H9H4 285 aa0□□□□□ -2.41
VPS35-212ENST00000640313 PLEKHA1Q9HB21 404 aa0□□□□□ -2.41
VPS35-212ENST00000640313 ABCB9Q9NP78 766 aa0□□□□□ -2.41
VPS35-212ENST00000640313 MRPL16Q9NX20 251 aaKnown RBP0□□□□□ -2.41
VPS35-212ENST00000640313 AHSPQ9NZD4 102 aa0□□□□□ -2.41
VPS35-212ENST00000640313 COX16Q9P0S2 106 aa0□□□□□ -2.41
VPS35-212ENST00000640313 GCNT4Q9P109 453 aa0□□□□□ -2.41
VPS35-212ENST00000640313 PRO2289Q9P1D8 64 aa0□□□□□ -2.41
VPS35-212ENST00000640313 TAC3Q9UHF0 121 aa0□□□□□ -2.41
VPS35-212ENST00000640313 ATAD2BQ9ULI0 1458 aa0□□□□□ -2.41
VPS35-212ENST00000640313 PLXNB3Q9ULL4 1909 aa0□□□□□ -2.41
VPS35-212ENST00000640313 TBC1D24Q9ULP9 559 aa0□□□□□ -2.41
VPS35-212ENST00000640313 TMCC3Q9ULS5 477 aa0□□□□□ -2.41
VPS35-212ENST00000640313 DDX19BQ9UMR2 479 aa0□□□□□ -2.41
VPS35-212ENST00000640313 TFR2Q9UP52 801 aa0□□□□□ -2.41
VPS35-212ENST00000640313 FLVCR2Q9UPI3 526 aa0□□□□□ -2.41
VPS35-212ENST00000640313 LINC00588Q9Y4M8 146 aa0□□□□□ -2.41
VPS35-212ENST00000640313 TRAPPC1Q9Y5R8 145 aa0□□□□□ -2.41
VPS35-212ENST00000640313 ZNF706Q9Y5V0 76 aaPredicted RBP0□□□□□ -2.41
VPS35-212ENST00000640313 SAR1BQ9Y6B6 198 aa0□□□□□ -2.41
VPS35-212ENST00000640313 ENPP4Q9Y6X5 453 aa0□□□□□ -2.41
VPS35-212ENST00000640313 CCDC88CQ9P219 2028 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 MUC12Q9UKN1 5478 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 ADAMTS7Q9UKP4 1686 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 LPAP08519 4548 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 PXDNLA1KZ92 1463 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 RGS12O14924 1447 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 TRBV24-1A0A075B6N3 115 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 IGHV3OR15-7A0A075B7D8 119 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 IGHV1-45A0A0A0MS14 117 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 IGKV1D-43A0A0B4J1Z2 117 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 TRAV8-4A0A0B4J246 113 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 TRAV25A0A0B4J276 109 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 A0A0J9YX75 114 aa-0.01□□□□□ -2.41
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms