RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 PLK3Q9H4B4 646 aa15.63■□□□□ 0.09
CLN3-254ENST00000637050 FAM90A10PA6NDY2 464 aa15.62■□□□□ 0.09
CLN3-254ENST00000637050 FAM90A18PA6NE21 464 aa15.62■□□□□ 0.09
CLN3-254ENST00000637050 FAM90A16PA6NEW6 464 aa15.62■□□□□ 0.09
CLN3-254ENST00000637050 FAM90A20PA6NIJ5 464 aa15.62■□□□□ 0.09
CLN3-254ENST00000637050 FAM90A8PA6NJQ4 464 aa15.62■□□□□ 0.09
CLN3-254ENST00000637050 FAM90A7PA6NKC0 464 aa15.62■□□□□ 0.09
CLN3-254ENST00000637050 FAM90A22PA8MWA6 464 aa15.62■□□□□ 0.09
CLN3-254ENST00000637050 FAM90A12PA8MX19 464 aa15.62■□□□□ 0.09
CLN3-254ENST00000637050 FAM90A5PA8MXJ8 464 aa15.62■□□□□ 0.09
CLN3-254ENST00000637050 VSTM5A8MXK1 200 aa15.62■□□□□ 0.09
CLN3-254ENST00000637050 FAM90A23PA8MXZ1 464 aa15.62■□□□□ 0.09
CLN3-254ENST00000637050 PRSS44E7EML9 344 aa15.62■□□□□ 0.09
CLN3-254ENST00000637050 E7EQL1 145 aa15.62■□□□□ 0.09
CLN3-254ENST00000637050 GEMIN2O14893 280 aaKnown RBP15.62■□□□□ 0.09
CLN3-254ENST00000637050 FAM90A15PP0C7V4 464 aa15.62■□□□□ 0.09
CLN3-254ENST00000637050 FAM90A13PP0C7W8 464 aa15.62■□□□□ 0.09
CLN3-254ENST00000637050 FAM90A14PP0C7W9 464 aa15.62■□□□□ 0.09
CLN3-254ENST00000637050 FAM90A24PP0C7X0 464 aa15.62■□□□□ 0.09
CLN3-254ENST00000637050 ERVK11-1P61568 191 aa15.62■□□□□ 0.09
CLN3-254ENST00000637050 SSBP1Q04837 148 aaKnown RBP15.62■□□□□ 0.09
CLN3-254ENST00000637050 ARL6IP1Q15041 203 aa15.62■□□□□ 0.09
CLN3-254ENST00000637050 BATF2Q8N1L9 274 aa15.62■□□□□ 0.09
CLN3-254ENST00000637050 ELMOD3Q96FG2 381 aa15.62■□□□□ 0.09
CLN3-254ENST00000637050 ZNF488Q96MN9 340 aa15.62■□□□□ 0.09
CLN3-254ENST00000637050 HS3ST6Q96QI5 342 aa15.62■□□□□ 0.09
CLN3-254ENST00000637050 PECRQ9BY49 303 aa15.62■□□□□ 0.09
CLN3-254ENST00000637050 HSF4Q9ULV5 492 aa15.62■□□□□ 0.09
CLN3-254ENST00000637050 RNF115Q9Y4L5 304 aa15.62■□□□□ 0.09
CLN3-254ENST00000637050 IGHV3-64DA0A0J9YX35 117 aa15.61■□□□□ 0.09
CLN3-254ENST00000637050 ANKRD20A5PA0PJZ0 165 aa15.61■□□□□ 0.09
CLN3-254ENST00000637050 LYRM1O43325 122 aa15.61■□□□□ 0.09
CLN3-254ENST00000637050 NOS1APO75052 506 aaPredicted RBP15.61■□□□□ 0.09
CLN3-254ENST00000637050 ECDO95905 644 aaPredicted RBP15.61■□□□□ 0.09
CLN3-254ENST00000637050 GSTT2BP0CG30 244 aa15.61■□□□□ 0.09
CLN3-254ENST00000637050 PGA5P0DJD9 388 aa15.61■□□□□ 0.09
CLN3-254ENST00000637050 RFX2P48378 723 aa15.61■□□□□ 0.09
CLN3-254ENST00000637050 ZNF81P51508 661 aa15.61■□□□□ 0.09
CLN3-254ENST00000637050 DYRK1AQ13627 763 aa15.61■□□□□ 0.09
CLN3-254ENST00000637050 NKPD1Q17RQ9 610 aa15.61■□□□□ 0.09
CLN3-254ENST00000637050 PNLIPRP3Q17RR3 467 aa15.61■□□□□ 0.09
CLN3-254ENST00000637050 OLFML2AQ68BL7 652 aa15.61■□□□□ 0.09
CLN3-254ENST00000637050 Q6ZNX1 250 aa15.61■□□□□ 0.09
CLN3-254ENST00000637050 Q8IYB0 196 aa15.61■□□□□ 0.09
CLN3-254ENST00000637050 CELF2-AS1Q8N7Q2 184 aa15.61■□□□□ 0.09
CLN3-254ENST00000637050 ST8SIA4Q92187 359 aa15.61■□□□□ 0.09
CLN3-254ENST00000637050 NEUROG1Q92886 237 aa15.61■□□□□ 0.09
CLN3-254ENST00000637050 NRIP2Q9BQI9 281 aa15.61■□□□□ 0.09
CLN3-254ENST00000637050 TMEM204Q9BSN7 226 aa15.61■□□□□ 0.09
CLN3-254ENST00000637050 ZNF581Q9P0T4 197 aa15.61■□□□□ 0.09
CLN3-254ENST00000637050 PLAUP00749 431 aa15.6■□□□□ 0.09
CLN3-254ENST00000637050 CHATP28329 748 aa15.6■□□□□ 0.09
CLN3-254ENST00000637050 SERPINF1P36955 418 aa15.6■□□□□ 0.09
CLN3-254ENST00000637050 MPPED2Q15777 294 aa15.6■□□□□ 0.09
CLN3-254ENST00000637050 PRAMEF6Q5VXH4 476 aa15.6■□□□□ 0.09
CLN3-254ENST00000637050 NRARPQ7Z6K4 114 aa15.6■□□□□ 0.09
CLN3-254ENST00000637050 FAM58AQ8N1B3 248 aa15.6■□□□□ 0.09
CLN3-254ENST00000637050 COX4I2Q96KJ9 171 aa15.6■□□□□ 0.09
CLN3-254ENST00000637050 ZDHHC8Q9ULC8 765 aa15.6■□□□□ 0.09
CLN3-254ENST00000637050 CACNG2Q9Y698 323 aa15.6■□□□□ 0.09
CLN3-254ENST00000637050 ADGRG4Q8IZF6 3080 aa15.6■□□□□ 0.09
CLN3-254ENST00000637050 A0A1B0GVG6 124 aa15.6■□□□□ 0.09
CLN3-254ENST00000637050 SERPINE3A8MV23 424 aa15.6■□□□□ 0.09
CLN3-254ENST00000637050 SPRY3O43610 288 aa15.6■□□□□ 0.09
CLN3-254ENST00000637050 SSX4O60224 188 aa15.6■□□□□ 0.09
CLN3-254ENST00000637050 SSX5O60225 188 aa15.6■□□□□ 0.09
CLN3-254ENST00000637050 CA11O75493 328 aa15.6■□□□□ 0.09
CLN3-254ENST00000637050 PRKACAP17612 351 aa15.6■□□□□ 0.09
CLN3-254ENST00000637050 AP3S2P59780 193 aa15.6■□□□□ 0.09
CLN3-254ENST00000637050 ACTBP60709 375 aa15.6■□□□□ 0.09
CLN3-254ENST00000637050 ACTG1P63261 375 aa15.6■□□□□ 0.09
CLN3-254ENST00000637050 MZT2BQ6NZ67 158 aa15.6■□□□□ 0.09
CLN3-254ENST00000637050 C6orf201Q7Z4U5 140 aa15.6■□□□□ 0.09
CLN3-254ENST00000637050 ZBTB8BQ8NAP8 495 aaPredicted RBP15.6■□□□□ 0.09
CLN3-254ENST00000637050 POC1AQ8NBT0 407 aa15.6■□□□□ 0.09
CLN3-254ENST00000637050 LILRB1Q8NHL6 650 aaPredicted RBP15.6■□□□□ 0.09
CLN3-254ENST00000637050 NUDCD2Q8WVJ2 157 aa15.6■□□□□ 0.09
CLN3-254ENST00000637050 CYYR1Q96J86 154 aa15.6■□□□□ 0.09
CLN3-254ENST00000637050 MEGF10Q96KG7 1140 aa15.6■□□□□ 0.09
CLN3-254ENST00000637050 PLEKHJ1Q9NW61 149 aa15.6■□□□□ 0.09
CLN3-254ENST00000637050 TAS2R8Q9NYW2 309 aa15.6■□□□□ 0.09
CLN3-254ENST00000637050 IL36RNQ9UBH0 155 aa15.6■□□□□ 0.09
CLN3-254ENST00000637050 MEIS3P1A6NDR6 274 aa15.59■□□□□ 0.09
CLN3-254ENST00000637050 A6NLC8 198 aa15.59■□□□□ 0.09
CLN3-254ENST00000637050 IGHV1-46P01743 117 aa15.59■□□□□ 0.09
CLN3-254ENST00000637050 ADH4P08319 380 aa15.59■□□□□ 0.09
CLN3-254ENST00000637050 SPNP16150 400 aa15.59■□□□□ 0.09
CLN3-254ENST00000637050 APOBEC3AP31941 199 aaPredicted RBP15.59■□□□□ 0.09
CLN3-254ENST00000637050 KIR2DL3P43628 341 aa15.59■□□□□ 0.09
CLN3-254ENST00000637050 GNG2P59768 71 aa15.59■□□□□ 0.09
CLN3-254ENST00000637050 MPV17LQ2QL34 196 aa15.59■□□□□ 0.09
CLN3-254ENST00000637050 WDR82Q6UXN9 313 aa15.59■□□□□ 0.09
CLN3-254ENST00000637050 ZNF826PQ6ZT77 177 aa15.59■□□□□ 0.09
CLN3-254ENST00000637050 TRAPPC6BQ86SZ2 158 aa15.59■□□□□ 0.09
CLN3-254ENST00000637050 LINC00596Q86U02 117 aa15.59■□□□□ 0.09
CLN3-254ENST00000637050 EMG1Q92979 244 aaKnown RBP15.59■□□□□ 0.09
CLN3-254ENST00000637050 PIK3IP1Q96FE7 263 aa15.59■□□□□ 0.09
CLN3-254ENST00000637050 NEDD4LQ96PU5 975 aa15.59■□□□□ 0.09
CLN3-254ENST00000637050 OR2V2Q96R30 315 aa15.59■□□□□ 0.09
CLN3-254ENST00000637050 C7orf50Q9BRJ6 194 aaKnown RBP15.59■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms