RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 WNT3P56703 355 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 LGALSLQ3ZCW2 172 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-212ENST00000636194 ZBTB44Q8NCP5 570 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 PIGTQ969N2 578 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 LPAR5Q9H1C0 372 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 SLC26A1Q9H2B4 701 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 GORASP2Q9H8Y8 452 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 LYRM4Q9HD34 91 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 H3BRM9 83 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 H7C1H1 209 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 UNGP13051 313 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-212ENST00000636194 KIAA1644Q3SXP7 199 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 NSUN5P2Q63ZY6 315 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 PMS2CLQ68D20 193 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 C12orf54Q6X4T0 127 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 ZNF775Q96BV0 537 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-212ENST00000636194 NMNAT3Q96T66 252 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 MS4A5Q9H3V2 200 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 TMEM38BQ9NVV0 291 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 C5AR2Q9P296 337 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 ST3GAL6Q9Y274 331 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 HDGFL3Q9Y3E1 203 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 LINC00862A6NCI5 91 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 CD3EP07766 207 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 PRDX2P32119 198 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 JAG1P78504 1218 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 GUCA2BQ16661 112 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 OVCH2Q7RTZ1 564 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 OR1L6Q8NGR2 347 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 TFAP2BQ92481 460 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 GHSRQ92847 366 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 HGDQ93099 445 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 GMLQ99445 158 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 FZD8Q9H461 694 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 KLK11Q9UBX7 282 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 POMT2Q9UKY4 750 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 ARAP2Q8WZ64 1704 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 TET2Q6N021 2002 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-212ENST00000636194 PRR32B1ATL7 298 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 BTG2P78543 158 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 DHRS4L2Q6PKH6 230 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 SPICQ8N5J4 248 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 OR52M1Q8NGK5 317 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 SLC25A40Q8TBP6 338 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 INPP5KQ9BT40 448 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 PKIBQ9C010 78 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 PCOLCE2Q9UKZ9 415 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 GFRA2O00451 464 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 TMPRSS11DO60235 418 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 CSN3P07498 182 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 IAPPP10997 89 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 COX6B1P14854 86 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 SLC5A12Q1EHB4 618 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 PP6455Q8WZ26 134 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 SPINK4O60575 86 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 OR2A4O95047 310 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 MORN1Q5T089 497 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 TMEM78Q5T7P6 136 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 CLRN3Q8NCR9 226 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 OR2A7Q96R45 310 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 TREM2Q9NZC2 230 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 PLXNB2O15031 1838 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 TGFB1I1O43294 461 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 CST4P01036 141 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 OPN1MWP04001 364 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 OPN1MW2P0DN77 364 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 OPN1MW3P0DN78 364 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 CD37P11049 281 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 RPL29P47914 159 aaKnown RBP5.42□□□□□ -1.54
SCN1A-212ENST00000636194 COMPP49747 757 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-212ENST00000636194 ASCL1P50553 236 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 MAT1AQ00266 395 aaKnown RBP5.42□□□□□ -1.54
SCN1A-212ENST00000636194 PNRC1Q12796 327 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-212ENST00000636194 TMEM241Q24JQ0 296 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 C1orf185Q5T7R7 199 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 ZNF691Q5VV52 312 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 SLC16A12Q6ZSM3 486 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 GPR137Q96N19 417 aa5.42□□□□□ -1.54
SCN1A-212ENST00000636194 DOT1LQ8TEK3 1739 aa5.41□□□□□ -1.54
SCN1A-212ENST00000636194 TOPAZ1Q8N9V7 1692 aa5.41□□□□□ -1.54
SCN1A-212ENST00000636194 OR2W5A6NFC9 320 aa5.41□□□□□ -1.54
SCN1A-212ENST00000636194 CLDN34H7C241 214 aa5.41□□□□□ -1.54
SCN1A-212ENST00000636194 LRP3O75074 770 aa5.41□□□□□ -1.54
SCN1A-212ENST00000636194 TRGC1P0CF51 173 aa5.41□□□□□ -1.54
SCN1A-212ENST00000636194 PRF1P14222 555 aa5.41□□□□□ -1.54
SCN1A-212ENST00000636194 RPL27P61353 136 aaKnown RBP5.41□□□□□ -1.54
SCN1A-212ENST00000636194 ERVS71-1P61550 626 aa5.41□□□□□ -1.54
SCN1A-212ENST00000636194 EIF3IQ13347 325 aaKnown RBP5.41□□□□□ -1.54
SCN1A-212ENST00000636194 TMEM136Q6ZRR5 245 aa5.41□□□□□ -1.54
SCN1A-212ENST00000636194 OLIG3Q7RTU3 272 aa5.41□□□□□ -1.54
SCN1A-212ENST00000636194 LINC00346Q8IVM7 164 aa5.41□□□□□ -1.54
SCN1A-212ENST00000636194 UBE2DNLQ8IWF7 75 aa5.41□□□□□ -1.54
SCN1A-212ENST00000636194 OSR2Q8N2R0 312 aa5.41□□□□□ -1.54
SCN1A-212ENST00000636194 LILRB4Q8NHJ6 448 aa5.41□□□□□ -1.54
SCN1A-212ENST00000636194 MRAPQ8TCY5 172 aa5.41□□□□□ -1.54
SCN1A-212ENST00000636194 PIK3IP1Q96FE7 263 aa5.41□□□□□ -1.54
SCN1A-212ENST00000636194 HEXA-AS1Q9H8Q6 139 aa5.41□□□□□ -1.54
SCN1A-212ENST00000636194 IL37Q9NZH6 218 aa5.41□□□□□ -1.54
SCN1A-212ENST00000636194 IGKV3D-15A0A087WSY6 115 aa5.41□□□□□ -1.54
SCN1A-212ENST00000636194 SPRY3O43610 288 aa5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 81.6 ms