RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 FSTP19883 344 aa15.07■□□□□ 0
CLN3-243ENST00000635973 TPBGQ13641 420 aa15.07■□□□□ 0
CLN3-243ENST00000635973 ACSM3Q53FZ2 586 aa15.07■□□□□ 0
CLN3-243ENST00000635973 DDI2Q5TDH0 399 aa15.07■□□□□ 0
CLN3-243ENST00000635973 STUMQ69YW2 141 aa15.07■□□□□ 0
CLN3-243ENST00000635973 ACP7Q6ZNF0 438 aa15.07■□□□□ 0
CLN3-243ENST00000635973 SPARTQ8N0X7 666 aa15.07■□□□□ 0
CLN3-243ENST00000635973 FCGR1BQ92637 280 aa15.07■□□□□ 0
CLN3-243ENST00000635973 EMG1Q92979 244 aaKnown RBP15.07■□□□□ 0
CLN3-243ENST00000635973 TMEM203Q969S6 136 aa15.07■□□□□ 0
CLN3-243ENST00000635973 SUCNR1Q9BXA5 334 aa15.07■□□□□ 0
CLN3-243ENST00000635973 SMURF1Q9HCE7 757 aa15.07■□□□□ 0
CLN3-243ENST00000635973 NOX4Q9NPH5 578 aa15.07■□□□□ 0
CLN3-243ENST00000635973 TMEM138Q9NPI0 162 aa15.07■□□□□ 0
CLN3-243ENST00000635973 CTSZQ9UBR2 303 aa15.07■□□□□ 0
CLN3-243ENST00000635973 ARHGAP32A7KAX9 2087 aa15.06■□□□□ 0
CLN3-243ENST00000635973 TRBV5-7A0A0A0MS05 114 aa15.06■□□□□ 0
CLN3-243ENST00000635973 TNFAIP8O95379 198 aa15.06■□□□□ 0
CLN3-243ENST00000635973 AVPP01185 164 aa15.06■□□□□ 0
CLN3-243ENST00000635973 TMEM225BP0DP42 221 aa15.06■□□□□ 0
CLN3-243ENST00000635973 FPR2P25090 351 aa15.06■□□□□ 0
CLN3-243ENST00000635973 PSMA1P25786 263 aaKnown RBP15.06■□□□□ 0
CLN3-243ENST00000635973 PSMB9P28065 219 aa15.06■□□□□ 0
CLN3-243ENST00000635973 BDKRB2P30411 391 aa15.06■□□□□ 0
CLN3-243ENST00000635973 TGFBR2P37173 567 aa15.06■□□□□ 0
CLN3-243ENST00000635973 NPY4RP50391 375 aa15.06■□□□□ 0
CLN3-243ENST00000635973 RPS25P62851 125 aaKnown RBP15.06■□□□□ 0
CLN3-243ENST00000635973 PDZK1IP1Q13113 114 aa15.06■□□□□ 0
CLN3-243ENST00000635973 IKZF1Q13422 519 aa15.06■□□□□ 0
CLN3-243ENST00000635973 TRAM1Q15629 374 aa15.06■□□□□ 0
CLN3-243ENST00000635973 ARMCX4Q5H9R4 360 aa15.06■□□□□ 0
CLN3-243ENST00000635973 ASPHD2Q6ICH7 369 aa15.06■□□□□ 0
CLN3-243ENST00000635973 ZNF529Q6P280 563 aa15.06■□□□□ 0
CLN3-243ENST00000635973 FIP1L1Q6UN15 594 aaKnown RBP15.06■□□□□ 0
CLN3-243ENST00000635973 C1orf229Q6ZS94 237 aaPredicted RBP15.06■□□□□ 0
CLN3-243ENST00000635973 USP43Q70EL4 1123 aa15.06■□□□□ 0
CLN3-243ENST00000635973 Q8IYB0 196 aa15.06■□□□□ 0
CLN3-243ENST00000635973 FAM216BQ8N7L0 139 aa15.06■□□□□ 0
CLN3-243ENST00000635973 OR52N4Q8NGI2 321 aa15.06■□□□□ 0
CLN3-243ENST00000635973 MTCH1Q9NZJ7 389 aa15.06■□□□□ 0
CLN3-243ENST00000635973 OR14J1Q9UGF5 321 aa15.06■□□□□ 0
CLN3-243ENST00000635973 TRAV8-7A0A075B6U6 113 aa15.05■□□□□ -0
CLN3-243ENST00000635973 A8MXK9 166 aa15.05■□□□□ -0
CLN3-243ENST00000635973 ANGPTL7O43827 346 aa15.05■□□□□ -0
CLN3-243ENST00000635973 MAS1P04201 325 aa15.05■□□□□ -0
CLN3-243ENST00000635973 BCL3P20749 454 aa15.05■□□□□ -0
CLN3-243ENST00000635973 ZFP36P26651 326 aaKnown RBP15.05■□□□□ -0
CLN3-243ENST00000635973 HILS1P60008 231 aa15.05■□□□□ -0
CLN3-243ENST00000635973 INSL4Q14641 139 aa15.05■□□□□ -0
CLN3-243ENST00000635973 WDR25Q64LD2 544 aaPredicted RBP15.05■□□□□ -0
CLN3-243ENST00000635973 CEACAM19Q7Z692 300 aa15.05■□□□□ -0
CLN3-243ENST00000635973 PNLDC1Q8NA58 520 aaKnown RBP15.05■□□□□ -0
CLN3-243ENST00000635973 ANGPTL6Q8NI99 470 aa15.05■□□□□ -0
CLN3-243ENST00000635973 TNFAIP8L1Q8WVP5 186 aa15.05■□□□□ -0
CLN3-243ENST00000635973 ST8SIA4Q92187 359 aa15.05■□□□□ -0
CLN3-243ENST00000635973 GCDHQ92947 438 aaPredicted RBP15.05■□□□□ -0
CLN3-243ENST00000635973 DNTTIP1Q9H147 329 aa15.05■□□□□ -0
CLN3-243ENST00000635973 ELL3Q9HB65 397 aaPredicted RBP15.05■□□□□ -0
CLN3-243ENST00000635973 HES4Q9HCC6 221 aa15.05■□□□□ -0
CLN3-243ENST00000635973 KAAG1Q9UBP8 84 aa15.05■□□□□ -0
CLN3-243ENST00000635973 FOXJ3Q9UPW0 622 aa15.05■□□□□ -0
CLN3-243ENST00000635973 RFPL4AA6NLU0 287 aa15.04■□□□□ -0
CLN3-243ENST00000635973 RFPL4AL1F8VTS6 287 aa15.04■□□□□ -0
CLN3-243ENST00000635973 TNFRSF13BO14836 293 aaPredicted RBP15.04■□□□□ -0
CLN3-243ENST00000635973 NDUFB3O43676 98 aa15.04■□□□□ -0
CLN3-243ENST00000635973 TFF1P04155 84 aa15.04■□□□□ -0
CLN3-243ENST00000635973 ALDOBP05062 364 aa15.04■□□□□ -0
CLN3-243ENST00000635973 ACAA1P09110 424 aaPredicted RBP15.04■□□□□ -0
CLN3-243ENST00000635973 PSG2P11465 335 aa15.04■□□□□ -0
CLN3-243ENST00000635973 IGFBP3P17936 291 aaPredicted RBP15.04■□□□□ -0
CLN3-243ENST00000635973 ZNF93P35789 620 aaPredicted RBP15.04■□□□□ -0
CLN3-243ENST00000635973 IL13RA1P78552 427 aa15.04■□□□□ -0
CLN3-243ENST00000635973 LRRC10Q5BKY1 277 aa15.04■□□□□ -0
CLN3-243ENST00000635973 UBE2UQ5VVX9 321 aa15.04■□□□□ -0
CLN3-243ENST00000635973 RBMS3Q6XE24 437 aaKnown RBP15.04■□□□□ -0
CLN3-243ENST00000635973 RNF144BQ7Z419 303 aa15.04■□□□□ -0
CLN3-243ENST00000635973 MED30Q96HR3 178 aa15.04■□□□□ -0
CLN3-243ENST00000635973 GAFA1Q96PS6 74 aa15.04■□□□□ -0
CLN3-243ENST00000635973 TCF7L1Q9HCS4 588 aa15.04■□□□□ -0
CLN3-243ENST00000635973 RBFOX1Q9NWB1 397 aaKnown RBP15.04■□□□□ -0
CLN3-243ENST00000635973 IGKV1D-17A0A075B6S4 117 aa15.03■□□□□ -0
CLN3-243ENST00000635973 A0A1B0GW55 424 aa15.03■□□□□ -0
CLN3-243ENST00000635973 GABRPO00591 440 aa15.03■□□□□ -0
CLN3-243ENST00000635973 DVL1O14640 695 aa15.03■□□□□ -0
CLN3-243ENST00000635973 GPX5O75715 221 aa15.03■□□□□ -0
CLN3-243ENST00000635973 KNG1P01042 644 aa15.03■□□□□ -0
CLN3-243ENST00000635973 DUX4L2P0CJ85 424 aa15.03■□□□□ -0
CLN3-243ENST00000635973 DUX4L3P0CJ86 424 aa15.03■□□□□ -0
CLN3-243ENST00000635973 DUX4L4P0CJ87 422 aa15.03■□□□□ -0
CLN3-243ENST00000635973 DUX4L5P0CJ88 424 aa15.03■□□□□ -0
CLN3-243ENST00000635973 DUX4L6P0CJ89 424 aa15.03■□□□□ -0
CLN3-243ENST00000635973 DUX4L7P0CJ90 424 aa15.03■□□□□ -0
CLN3-243ENST00000635973 GABRA5P31644 462 aa15.03■□□□□ -0
CLN3-243ENST00000635973 CAPZA1P52907 286 aa15.03■□□□□ -0
CLN3-243ENST00000635973 SNU13P55769 128 aaKnown RBP15.03■□□□□ -0
CLN3-243ENST00000635973 ZP1P60852 638 aa15.03■□□□□ -0
CLN3-243ENST00000635973 ERVK11-1P61568 191 aa15.03■□□□□ -0
CLN3-243ENST00000635973 NEDD8Q15843 81 aa15.03■□□□□ -0
CLN3-243ENST00000635973 HSD17B12Q53GQ0 312 aa15.03■□□□□ -0
CLN3-243ENST00000635973 ATPAF1Q5TC12 328 aaPredicted RBP15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms