RNA–Protein interactions for RNA: ENST00000635450.2

LINC00339-209, long intergenic non-protein coding RNA 339, humanhuman

TSL 5

Gene LINC00339, Length 947 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-209ENST00000635450 NRIP2Q9BQI9 281 aa12.85□□□□□ -0.35
LINC00339-209ENST00000635450 MS4A7Q9GZW8 240 aaPredicted RBP12.85□□□□□ -0.35
LINC00339-209ENST00000635450 OR14J1Q9UGF5 321 aa12.85□□□□□ -0.35
LINC00339-209ENST00000635450 MEGF8Q7Z7M0 2845 aa12.84□□□□□ -0.35
LINC00339-209ENST00000635450 IGKV1-9A0A0C4DH69 117 aa12.84□□□□□ -0.35
LINC00339-209ENST00000635450 ZNF879B4DU55 563 aa12.84□□□□□ -0.35
LINC00339-209ENST00000635450 SLC1A7O00341 560 aa12.84□□□□□ -0.35
LINC00339-209ENST00000635450 OGG1O15527 345 aa12.84□□□□□ -0.35
LINC00339-209ENST00000635450 TOX4O94842 621 aa12.84□□□□□ -0.35
LINC00339-209ENST00000635450 TFF1P04155 84 aa12.84□□□□□ -0.35
LINC00339-209ENST00000635450 HCKP08631 526 aa12.84□□□□□ -0.35
LINC00339-209ENST00000635450 SELLP14151 372 aa12.84□□□□□ -0.35
LINC00339-209ENST00000635450 POU3F4P49335 361 aa12.84□□□□□ -0.35
LINC00339-209ENST00000635450 CAV3P56539 151 aa12.84□□□□□ -0.35
LINC00339-209ENST00000635450 RIPK1Q13546 671 aa12.84□□□□□ -0.35
LINC00339-209ENST00000635450 DGUOKQ16854 277 aa12.84□□□□□ -0.35
LINC00339-209ENST00000635450 C6orf141Q5SZD1 244 aa12.84□□□□□ -0.35
LINC00339-209ENST00000635450 XAF1Q6GPH4 301 aa12.84□□□□□ -0.35
LINC00339-209ENST00000635450 LAIR2Q6ISS4 152 aa12.84□□□□□ -0.35
LINC00339-209ENST00000635450 FIP1L1Q6UN15 594 aaKnown RBP12.84□□□□□ -0.35
LINC00339-209ENST00000635450 IZUMO2Q6UXV1 221 aa12.84□□□□□ -0.35
LINC00339-209ENST00000635450 RBMS3Q6XE24 437 aaKnown RBP12.84□□□□□ -0.35
LINC00339-209ENST00000635450 C9orf139Q6ZV77 190 aa12.84□□□□□ -0.35
LINC00339-209ENST00000635450 Q8IYB0 196 aa12.84□□□□□ -0.35
LINC00339-209ENST00000635450 ZNF561Q8N587 486 aa12.84□□□□□ -0.35
LINC00339-209ENST00000635450 PARP16Q8N5Y8 322 aa12.84□□□□□ -0.35
LINC00339-209ENST00000635450 SLAMF9Q96A28 289 aa12.84□□□□□ -0.35
LINC00339-209ENST00000635450 SMIM19Q96E16 107 aa12.84□□□□□ -0.35
LINC00339-209ENST00000635450 SDSLQ96GA7 329 aa12.84□□□□□ -0.35
LINC00339-209ENST00000635450 TBX15Q96SF7 602 aa12.84□□□□□ -0.35
LINC00339-209ENST00000635450 PCGF1Q9BSM1 259 aa12.84□□□□□ -0.35
LINC00339-209ENST00000635450 CNTD2Q9H8S5 307 aa12.84□□□□□ -0.35
LINC00339-209ENST00000635450 HES4Q9HCC6 221 aa12.84□□□□□ -0.35
LINC00339-209ENST00000635450 ZNF222Q9UK12 451 aa12.84□□□□□ -0.35
LINC00339-209ENST00000635450 ERGIC3Q9Y282 383 aa12.84□□□□□ -0.35
LINC00339-209ENST00000635450 ZNF281Q9Y2X9 895 aa12.84□□□□□ -0.35
LINC00339-209ENST00000635450 MAGEB3O15480 346 aa12.83□□□□□ -0.36
LINC00339-209ENST00000635450 ATP6V1G2O95670 118 aa12.83□□□□□ -0.36
LINC00339-209ENST00000635450 KNG1P01042 644 aa12.83□□□□□ -0.36
LINC00339-209ENST00000635450 MT-ND2P03891 347 aa12.83□□□□□ -0.36
LINC00339-209ENST00000635450 RNASE1P07998 156 aaKnown RBP12.83□□□□□ -0.36
LINC00339-209ENST00000635450 MMP9P14780 707 aa12.83□□□□□ -0.36
LINC00339-209ENST00000635450 C21orf33P30042 268 aaPredicted RBP12.83□□□□□ -0.36
LINC00339-209ENST00000635450 PRDX2P32119 198 aa12.83□□□□□ -0.36
LINC00339-209ENST00000635450 SOX2P48431 317 aa12.83□□□□□ -0.36
LINC00339-209ENST00000635450 TAS2R43P59537 309 aa12.83□□□□□ -0.36
LINC00339-209ENST00000635450 ERVK11-1P61568 191 aa12.83□□□□□ -0.36
LINC00339-209ENST00000635450 ARF6P62330 175 aa12.83□□□□□ -0.36
LINC00339-209ENST00000635450 DEFB112Q30KQ8 113 aa12.83□□□□□ -0.36
LINC00339-209ENST00000635450 CMTM4Q8IZR5 234 aa12.83□□□□□ -0.36
LINC00339-209ENST00000635450 ZNRF1Q8ND25 227 aa12.83□□□□□ -0.36
LINC00339-209ENST00000635450 RPS4Y2Q8TD47 263 aa12.83□□□□□ -0.36
LINC00339-209ENST00000635450 EMG1Q92979 244 aaKnown RBP12.83□□□□□ -0.36
LINC00339-209ENST00000635450 MYDGFQ969H8 173 aa12.83□□□□□ -0.36
LINC00339-209ENST00000635450 RFT1Q96AA3 541 aa12.83□□□□□ -0.36
LINC00339-209ENST00000635450 CPNE2Q96FN4 548 aaPredicted RBP12.83□□□□□ -0.36
LINC00339-209ENST00000635450 DMRTB1Q96MA1 342 aa12.83□□□□□ -0.36
LINC00339-209ENST00000635450 WDFY2Q96P53 400 aa12.83□□□□□ -0.36
LINC00339-209ENST00000635450 DCTN5Q9BTE1 182 aa12.83□□□□□ -0.36
LINC00339-209ENST00000635450 MTCH1Q9NZJ7 389 aa12.83□□□□□ -0.36
LINC00339-209ENST00000635450 ONECUT1Q9UBC0 465 aa12.83□□□□□ -0.36
LINC00339-209ENST00000635450 MAB21L2Q9Y586 359 aa12.83□□□□□ -0.36
LINC00339-209ENST00000635450 A0A1W2PQ09 198 aa12.82□□□□□ -0.36
LINC00339-209ENST00000635450 PTGES3LE9PB15 166 aa12.82□□□□□ -0.36
LINC00339-209ENST00000635450 SPRY1O43609 319 aaPredicted RBP12.82□□□□□ -0.36
LINC00339-209ENST00000635450 SULT1B1O43704 296 aa12.82□□□□□ -0.36
LINC00339-209ENST00000635450 ALX3O95076 343 aa12.82□□□□□ -0.36
LINC00339-209ENST00000635450 LALBAP00709 142 aa12.82□□□□□ -0.36
LINC00339-209ENST00000635450 RAB3AP20336 220 aa12.82□□□□□ -0.36
LINC00339-209ENST00000635450 MYF6P23409 242 aa12.82□□□□□ -0.36
LINC00339-209ENST00000635450 WNT4P56705 351 aa12.82□□□□□ -0.36
LINC00339-209ENST00000635450 GPR157Q5UAW9 335 aa12.82□□□□□ -0.36
LINC00339-209ENST00000635450 CD177Q8N6Q3 437 aa12.82□□□□□ -0.36
LINC00339-209ENST00000635450 LY6G5BQ8NDX9 201 aa12.82□□□□□ -0.36
LINC00339-209ENST00000635450 SPACA5Q96QH8 159 aa12.82□□□□□ -0.36
LINC00339-209ENST00000635450 ANKRD60Q9BZ19 345 aa12.82□□□□□ -0.36
LINC00339-209ENST00000635450 FKBP14Q9NWM8 211 aa12.82□□□□□ -0.36
LINC00339-209ENST00000635450 TPRKBQ9Y3C4 175 aa12.82□□□□□ -0.36
LINC00339-209ENST00000635450 KPTNQ9Y664 436 aa12.82□□□□□ -0.36
LINC00339-209ENST00000635450 HOXA3O43365 443 aaPredicted RBP12.81□□□□□ -0.36
LINC00339-209ENST00000635450 CDK1P06493 297 aa12.81□□□□□ -0.36
LINC00339-209ENST00000635450 OMGP23515 440 aa12.81□□□□□ -0.36
LINC00339-209ENST00000635450 CEBPDP49716 269 aaPredicted RBP12.81□□□□□ -0.36
LINC00339-209ENST00000635450 BPIFB3P59826 476 aa12.81□□□□□ -0.36
LINC00339-209ENST00000635450 PRB3Q04118 309 aaPredicted RBP12.81□□□□□ -0.36
LINC00339-209ENST00000635450 PDZK1IP1Q13113 114 aa12.81□□□□□ -0.36
LINC00339-209ENST00000635450 PDCD1Q15116 288 aa12.81□□□□□ -0.36
LINC00339-209ENST00000635450 YIF1BQ5BJH7 314 aa12.81□□□□□ -0.36
LINC00339-209ENST00000635450 DMKNQ6E0U4 476 aaPredicted RBP12.81□□□□□ -0.36
LINC00339-209ENST00000635450 NANOGP1Q8N7R0 232 aa12.81□□□□□ -0.36
LINC00339-209ENST00000635450 ZFP41Q8N8Y5 198 aa12.81□□□□□ -0.36
LINC00339-209ENST00000635450 C8orf46Q8TAG6 207 aa12.81□□□□□ -0.36
LINC00339-209ENST00000635450 RGP1Q92546 391 aaPredicted RBP12.81□□□□□ -0.36
LINC00339-209ENST00000635450 GHSRQ92847 366 aa12.81□□□□□ -0.36
LINC00339-209ENST00000635450 TMEM106AQ96A25 262 aa12.81□□□□□ -0.36
LINC00339-209ENST00000635450 GPER1Q99527 375 aa12.81□□□□□ -0.36
LINC00339-209ENST00000635450 SIRPDQ9H106 197 aa12.81□□□□□ -0.36
LINC00339-209ENST00000635450 TNFRSF19Q9NS68 423 aa12.81□□□□□ -0.36
LINC00339-209ENST00000635450 GLS2Q9UI32 602 aa12.81□□□□□ -0.36
LINC00339-209ENST00000635450 SIRT4Q9Y6E7 314 aaPredicted RBP12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms