RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 CR1LQ2VPA4 569 aa16.87■□□□□ 0.29
PTCD3-220ENST00000627371 DDI2Q5TDH0 399 aa16.87■□□□□ 0.29
PTCD3-220ENST00000627371 UBE2UQ5VVX9 321 aa16.87■□□□□ 0.29
PTCD3-220ENST00000627371 DCAF12L2Q5VW00 463 aa16.87■□□□□ 0.29
PTCD3-220ENST00000627371 FCGR1BQ92637 280 aa16.87■□□□□ 0.29
PTCD3-220ENST00000627371 MMP26Q9NRE1 261 aa16.87■□□□□ 0.29
PTCD3-220ENST00000627371 SF3B6Q9Y3B4 125 aaKnown RBP16.87■□□□□ 0.29
PTCD3-220ENST00000627371 IGKV1-12A0A0C4DH73 117 aa16.86■□□□□ 0.29
PTCD3-220ENST00000627371 MAGEA13PA6NCF6 341 aa16.86■□□□□ 0.29
PTCD3-220ENST00000627371 RFPL4AA6NLU0 287 aa16.86■□□□□ 0.29
PTCD3-220ENST00000627371 RFPL4AL1F8VTS6 287 aa16.86■□□□□ 0.29
PTCD3-220ENST00000627371 GABRPO00591 440 aa16.86■□□□□ 0.29
PTCD3-220ENST00000627371 SIGLEC5O15389 551 aa16.86■□□□□ 0.29
PTCD3-220ENST00000627371 ANGPTL7O43827 346 aa16.86■□□□□ 0.29
PTCD3-220ENST00000627371 KDM4BO94953 1096 aa16.86■□□□□ 0.29
PTCD3-220ENST00000627371 IGKV1D-12P01611 117 aa16.86■□□□□ 0.29
PTCD3-220ENST00000627371 GABRA2P47869 451 aa16.86■□□□□ 0.29
PTCD3-220ENST00000627371 NPBWR2P48146 333 aa16.86■□□□□ 0.29
PTCD3-220ENST00000627371 RPS25P62851 125 aaKnown RBP16.86■□□□□ 0.29
PTCD3-220ENST00000627371 IL13RA1P78552 427 aa16.86■□□□□ 0.29
PTCD3-220ENST00000627371 PAX2Q02962 417 aa16.86■□□□□ 0.29
PTCD3-220ENST00000627371 ARMCX4Q5H9R4 360 aa16.86■□□□□ 0.29
PTCD3-220ENST00000627371 SATL1Q86VE3 508 aa16.86■□□□□ 0.29
PTCD3-220ENST00000627371 EMG1Q92979 244 aaKnown RBP16.86■□□□□ 0.29
PTCD3-220ENST00000627371 TMEM203Q969S6 136 aa16.86■□□□□ 0.29
PTCD3-220ENST00000627371 DACT3Q96B18 629 aaPredicted RBP16.86■□□□□ 0.29
PTCD3-220ENST00000627371 SDSLQ96GA7 329 aa16.86■□□□□ 0.29
PTCD3-220ENST00000627371 MED30Q96HR3 178 aa16.86■□□□□ 0.29
PTCD3-220ENST00000627371 GPER1Q99527 375 aa16.86■□□□□ 0.29
PTCD3-220ENST00000627371 RHOFQ9HBH0 211 aa16.86■□□□□ 0.29
PTCD3-220ENST00000627371 RBFOX1Q9NWB1 397 aaKnown RBP16.86■□□□□ 0.29
PTCD3-220ENST00000627371 NIPBLQ6KC79 2804 aaeCLIP16.86■□□□□ 0.29
PTCD3-220ENST00000627371 SETD2Q9BYW2 2564 aaPredicted RBP16.85■□□□□ 0.29
PTCD3-220ENST00000627371 J3QLI3 93 aa16.85■□□□□ 0.29
PTCD3-220ENST00000627371 NDUFB3O43676 98 aa16.85■□□□□ 0.29
PTCD3-220ENST00000627371 TMEM225BP0DP42 221 aa16.85■□□□□ 0.29
PTCD3-220ENST00000627371 SELLP14151 372 aa16.85■□□□□ 0.29
PTCD3-220ENST00000627371 GABRA5P31644 462 aa16.85■□□□□ 0.29
PTCD3-220ENST00000627371 ZNF93P35789 620 aaPredicted RBP16.85■□□□□ 0.29
PTCD3-220ENST00000627371 IKZF1Q13422 519 aa16.85■□□□□ 0.29
PTCD3-220ENST00000627371 SSX1Q16384 188 aa16.85■□□□□ 0.29
PTCD3-220ENST00000627371 DGUOKQ16854 277 aa16.85■□□□□ 0.29
PTCD3-220ENST00000627371 C11orf91Q3C1V1 193 aa16.85■□□□□ 0.29
PTCD3-220ENST00000627371 LRRC10Q5BKY1 277 aa16.85■□□□□ 0.29
PTCD3-220ENST00000627371 FAM120AOSQ5T036 256 aa16.85■□□□□ 0.29
PTCD3-220ENST00000627371 FAM27D1Q5T7N8 215 aa16.85■□□□□ 0.29
PTCD3-220ENST00000627371 CD276Q5ZPR3 534 aa16.85■□□□□ 0.29
PTCD3-220ENST00000627371 FAHD2BQ6P2I3 314 aaPredicted RBP16.85■□□□□ 0.29
PTCD3-220ENST00000627371 FAM58AQ8N1B3 248 aa16.85■□□□□ 0.29
PTCD3-220ENST00000627371 CD177Q8N6Q3 437 aa16.85■□□□□ 0.29
PTCD3-220ENST00000627371 PXT1Q8NFP0 134 aa16.85■□□□□ 0.29
PTCD3-220ENST00000627371 FAHD2AQ96GK7 314 aa16.85■□□□□ 0.29
PTCD3-220ENST00000627371 LPAR3Q9UBY5 353 aa16.85■□□□□ 0.29
PTCD3-220ENST00000627371 CDC42EP3Q9UKI2 254 aa16.85■□□□□ 0.29
PTCD3-220ENST00000627371 MAB21L2Q9Y586 359 aa16.85■□□□□ 0.29
PTCD3-220ENST00000627371 INSIG2Q9Y5U4 225 aa16.85■□□□□ 0.29
PTCD3-220ENST00000627371 LOC105371242A0A075B767 164 aa16.84■□□□□ 0.29
PTCD3-220ENST00000627371 IGHV2-70DA0A0C4DH43 119 aa16.84■□□□□ 0.29
PTCD3-220ENST00000627371 C22orf46C9J442 243 aa16.84■□□□□ 0.29
PTCD3-220ENST00000627371 CRLF1O75462 422 aa16.84■□□□□ 0.29
PTCD3-220ENST00000627371 RGS9O75916 674 aaPredicted RBP16.84■□□□□ 0.29
PTCD3-220ENST00000627371 TNFAIP8O95379 198 aa16.84■□□□□ 0.29
PTCD3-220ENST00000627371 PRDX2P32119 198 aa16.84■□□□□ 0.29
PTCD3-220ENST00000627371 FIP1L1Q6UN15 594 aaKnown RBP16.84■□□□□ 0.29
PTCD3-220ENST00000627371 TMEM91Q6ZNR0 172 aa16.84■□□□□ 0.29
PTCD3-220ENST00000627371 CEACAM19Q7Z692 300 aa16.84■□□□□ 0.29
PTCD3-220ENST00000627371 FGFRL1Q8N441 504 aa16.84■□□□□ 0.29
PTCD3-220ENST00000627371 ZNF561Q8N587 486 aa16.84■□□□□ 0.29
PTCD3-220ENST00000627371 PNLDC1Q8NA58 520 aaKnown RBP16.84■□□□□ 0.29
PTCD3-220ENST00000627371 TNFAIP8L1Q8WVP5 186 aa16.84■□□□□ 0.29
PTCD3-220ENST00000627371 RAB40AQ8WXH6 277 aa16.84■□□□□ 0.29
PTCD3-220ENST00000627371 ST8SIA4Q92187 359 aa16.84■□□□□ 0.29
PTCD3-220ENST00000627371 TMPRSS13Q9BYE2 586 aa16.84■□□□□ 0.29
PTCD3-220ENST00000627371 SHARPINQ9H0F6 387 aa16.84■□□□□ 0.29
PTCD3-220ENST00000627371 NDUFB11Q9NX14 153 aa16.84■□□□□ 0.29
PTCD3-220ENST00000627371 SLC25A10Q9UBX3 287 aaPredicted RBP16.84■□□□□ 0.29
PTCD3-220ENST00000627371 OR14J1Q9UGF5 321 aa16.84■□□□□ 0.29
PTCD3-220ENST00000627371 GPR37O15354 613 aa16.83■□□□□ 0.28
PTCD3-220ENST00000627371 ECDO95905 644 aaPredicted RBP16.83■□□□□ 0.28
PTCD3-220ENST00000627371 MAS1P04201 325 aa16.83■□□□□ 0.28
PTCD3-220ENST00000627371 SFTPBP07988 381 aa16.83■□□□□ 0.28
PTCD3-220ENST00000627371 UCHL1P09936 223 aa16.83■□□□□ 0.28
PTCD3-220ENST00000627371 HNF1AP20823 631 aa16.83■□□□□ 0.28
PTCD3-220ENST00000627371 OR3A4PP47883 348 aa16.83■□□□□ 0.28
PTCD3-220ENST00000627371 CEBPDP49716 269 aaPredicted RBP16.83■□□□□ 0.28
PTCD3-220ENST00000627371 GP2P55259 537 aaKnown RBP16.83■□□□□ 0.28
PTCD3-220ENST00000627371 HSD17B12Q53GQ0 312 aa16.83■□□□□ 0.28
PTCD3-220ENST00000627371 BTNL3Q6UXE8 466 aa16.83■□□□□ 0.28
PTCD3-220ENST00000627371 CDH26Q8IXH8 852 aa16.83■□□□□ 0.28
PTCD3-220ENST00000627371 NKAIN3Q8N8D7 197 aa16.83■□□□□ 0.28
PTCD3-220ENST00000627371 ZNRF1Q8ND25 227 aa16.83■□□□□ 0.28
PTCD3-220ENST00000627371 DSCAML1Q8TD84 2053 aa16.83■□□□□ 0.28
PTCD3-220ENST00000627371 PHYHIPQ92561 330 aa16.83■□□□□ 0.28
PTCD3-220ENST00000627371 NKX3-1Q99801 234 aaPredicted RBP16.83■□□□□ 0.28
PTCD3-220ENST00000627371 FAM192AQ9GZU8 254 aa16.83■□□□□ 0.28
PTCD3-220ENST00000627371 SEBOXQ9HB31 216 aaPredicted RBP16.83■□□□□ 0.28
PTCD3-220ENST00000627371 HMG20AQ9NP66 347 aa16.83■□□□□ 0.28
PTCD3-220ENST00000627371 IL36RNQ9UBH0 155 aa16.83■□□□□ 0.28
PTCD3-220ENST00000627371 ENSAO43768 121 aaKnown RBP16.82■□□□□ 0.28
PTCD3-220ENST00000627371 PRKACAP17612 351 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms