RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 DKK4Q9UBT3 224 aa18.94■□□□□ 0.62
PNKP-220ENST00000627232 LHX6Q9UPM6 363 aa18.94■□□□□ 0.62
PNKP-220ENST00000627232 IGKV1D-8A0A087WSZ0 117 aa18.93■□□□□ 0.62
PNKP-220ENST00000627232 SDCBPO00560 298 aaPredicted RBP18.93■□□□□ 0.62
PNKP-220ENST00000627232 SMPD2O60906 423 aa18.93■□□□□ 0.62
PNKP-220ENST00000627232 TSC22D2O75157 780 aa18.93■□□□□ 0.62
PNKP-220ENST00000627232 CD8AP01732 235 aa18.93■□□□□ 0.62
PNKP-220ENST00000627232 FCGR3AP08637 254 aa18.93■□□□□ 0.62
PNKP-220ENST00000627232 PPP3CBP16298 524 aa18.93■□□□□ 0.62
PNKP-220ENST00000627232 BCL3P20749 454 aa18.93■□□□□ 0.62
PNKP-220ENST00000627232 NFYAP23511 347 aaPredicted RBP18.93■□□□□ 0.62
PNKP-220ENST00000627232 NPBWR2P48146 333 aa18.93■□□□□ 0.62
PNKP-220ENST00000627232 NPY4RP50391 375 aa18.93■□□□□ 0.62
PNKP-220ENST00000627232 IDH3GP51553 393 aaPredicted RBP18.93■□□□□ 0.62
PNKP-220ENST00000627232 ARPC4P59998 168 aa18.93■□□□□ 0.62
PNKP-220ENST00000627232 GMFBP60983 142 aa18.93■□□□□ 0.62
PNKP-220ENST00000627232 ZNF573Q86YE8 665 aa18.93■□□□□ 0.62
PNKP-220ENST00000627232 LILRB4Q8NHJ6 448 aa18.93■□□□□ 0.62
PNKP-220ENST00000627232 A0A0B4J2A0 478 aa18.92■□□□□ 0.62
PNKP-220ENST00000627232 TRAPPC2LH3BP13 241 aa18.92■□□□□ 0.62
PNKP-220ENST00000627232 MSTNO14793 375 aa18.92■□□□□ 0.62
PNKP-220ENST00000627232 CRYABP02511 175 aaKnown RBP18.92■□□□□ 0.62
PNKP-220ENST00000627232 CELA3BP08861 270 aa18.92■□□□□ 0.62
PNKP-220ENST00000627232 HOXC12P31275 282 aa18.92■□□□□ 0.62
PNKP-220ENST00000627232 PPP1CBP62140 327 aa18.92■□□□□ 0.62
PNKP-220ENST00000627232 GNG3P63215 75 aa18.92■□□□□ 0.62
PNKP-220ENST00000627232 TMEM211Q6ICI0 200 aa18.92■□□□□ 0.62
PNKP-220ENST00000627232 ZNF585AQ6P3V2 769 aa18.92■□□□□ 0.62
PNKP-220ENST00000627232 C17orf78Q8N4C9 275 aa18.92■□□□□ 0.62
PNKP-220ENST00000627232 SLAMF9Q96A28 289 aa18.92■□□□□ 0.62
PNKP-220ENST00000627232 PKIBQ9C010 78 aa18.92■□□□□ 0.62
PNKP-220ENST00000627232 ZNF581Q9P0T4 197 aa18.92■□□□□ 0.62
PNKP-220ENST00000627232 ZNF629Q9UEG4 869 aaPredicted RBP18.92■□□□□ 0.62
PNKP-220ENST00000627232 SHPKQ9UHJ6 478 aa18.92■□□□□ 0.62
PNKP-220ENST00000627232 MCRIP1C9JLW8 97 aa18.91■□□□□ 0.62
PNKP-220ENST00000627232 CRHP06850 196 aa18.91■□□□□ 0.62
PNKP-220ENST00000627232 S100A1P23297 94 aa18.91■□□□□ 0.62
PNKP-220ENST00000627232 VAMP1P23763 118 aa18.91■□□□□ 0.62
PNKP-220ENST00000627232 SEC61A1P61619 476 aaKnown RBP18.91■□□□□ 0.62
PNKP-220ENST00000627232 MPV17LQ2QL34 196 aa18.91■□□□□ 0.62
PNKP-220ENST00000627232 MYPOPQ86VE0 399 aaPredicted RBP18.91■□□□□ 0.62
PNKP-220ENST00000627232 RBMXL3Q8N7X1 1067 aaKnown RBP18.91■□□□□ 0.62
PNKP-220ENST00000627232 OR8H1Q8NGG4 311 aa18.91■□□□□ 0.62
PNKP-220ENST00000627232 TMEM230Q96A57 120 aa18.91■□□□□ 0.62
PNKP-220ENST00000627232 RTBDNQ9BSG5 229 aaPredicted RBP18.91■□□□□ 0.62
PNKP-220ENST00000627232 PLK3Q9H4B4 646 aa18.91■□□□□ 0.62
PNKP-220ENST00000627232 NECAP2Q9NVZ3 263 aa18.91■□□□□ 0.62
PNKP-220ENST00000627232 PROCRQ9UNN8 238 aa18.91■□□□□ 0.62
PNKP-220ENST00000627232 CACNA1GO43497 2377 aa18.9■□□□□ 0.62
PNKP-220ENST00000627232 OR5H14A6NHG9 310 aa18.9■□□□□ 0.62
PNKP-220ENST00000627232 RFPL4AA6NLU0 287 aa18.9■□□□□ 0.62
PNKP-220ENST00000627232 RFPL4AL1F8VTS6 287 aa18.9■□□□□ 0.62
PNKP-220ENST00000627232 L7N2F9 121 aa18.9■□□□□ 0.62
PNKP-220ENST00000627232 SFT2D2O95562 160 aa18.9■□□□□ 0.62
PNKP-220ENST00000627232 CGAP01215 116 aa18.9■□□□□ 0.62
PNKP-220ENST00000627232 PDGFAP04085 211 aa18.9■□□□□ 0.62
PNKP-220ENST00000627232 PTGER4P35408 488 aa18.9■□□□□ 0.62
PNKP-220ENST00000627232 FGL1Q08830 312 aa18.9■□□□□ 0.62
PNKP-220ENST00000627232 FOXF2Q12947 444 aa18.9■□□□□ 0.62
PNKP-220ENST00000627232 DAZAP2Q15038 168 aaPredicted RBP18.9■□□□□ 0.62
PNKP-220ENST00000627232 EIF2S3LQ2VIR3 472 aaKnown RBP18.9■□□□□ 0.62
PNKP-220ENST00000627232 OR2T2Q6IF00 324 aa18.9■□□□□ 0.62
PNKP-220ENST00000627232 TEX261Q6UWH6 196 aa18.9■□□□□ 0.62
PNKP-220ENST00000627232 LINC00596Q86U02 117 aa18.9■□□□□ 0.62
PNKP-220ENST00000627232 WDR31Q8NA23 367 aa18.9■□□□□ 0.62
PNKP-220ENST00000627232 ELMOD3Q96FG2 381 aa18.9■□□□□ 0.62
PNKP-220ENST00000627232 DHRS9Q9BPW9 319 aa18.9■□□□□ 0.62
PNKP-220ENST00000627232 CLEC4MQ9H2X3 399 aaPredicted RBP18.9■□□□□ 0.62
PNKP-220ENST00000627232 OR51B6Q9H340 312 aa18.9■□□□□ 0.62
PNKP-220ENST00000627232 OBP2BQ9NPH6 170 aa18.9■□□□□ 0.62
PNKP-220ENST00000627232 DECR2Q9NUI1 292 aa18.9■□□□□ 0.62
PNKP-220ENST00000627232 MTCH1Q9NZJ7 389 aa18.9■□□□□ 0.62
PNKP-220ENST00000627232 SSUH2Q9Y2M2 353 aa18.9■□□□□ 0.62
PNKP-220ENST00000627232 U3KQ87 197 aa18.9■□□□□ 0.62
PNKP-220ENST00000627232 ZNF292O60281 2723 aa18.9■□□□□ 0.62
PNKP-220ENST00000627232 DBX1A6NMT0 343 aa18.9■□□□□ 0.62
PNKP-220ENST00000627232 TNFSF13O75888 250 aa18.9■□□□□ 0.62
PNKP-220ENST00000627232 IGKV3-15P01624 115 aa18.9■□□□□ 0.62
PNKP-220ENST00000627232 RAC2P15153 192 aa18.9■□□□□ 0.62
PNKP-220ENST00000627232 CXCL2P19875 107 aa18.9■□□□□ 0.62
PNKP-220ENST00000627232 IL32P24001 234 aa18.9■□□□□ 0.62
PNKP-220ENST00000627232 SSTR2P30874 369 aa18.9■□□□□ 0.62
PNKP-220ENST00000627232 IL24Q13007 206 aa18.9■□□□□ 0.62
PNKP-220ENST00000627232 BHLHE23Q8NDY6 225 aa18.9■□□□□ 0.62
PNKP-220ENST00000627232 RHOFQ9HBH0 211 aa18.9■□□□□ 0.62
PNKP-220ENST00000627232 ZNF286AQ9HBT8 521 aa18.9■□□□□ 0.62
PNKP-220ENST00000627232 C12orf4Q9NQ89 552 aa18.9■□□□□ 0.62
PNKP-220ENST00000627232 A0A1W2PR80 420 aa18.89■□□□□ 0.61
PNKP-220ENST00000627232 M0R233 179 aa18.89■□□□□ 0.61
PNKP-220ENST00000627232 LILRA1O75019 489 aa18.89■□□□□ 0.61
PNKP-220ENST00000627232 WDR1O75083 606 aa18.89■□□□□ 0.61
PNKP-220ENST00000627232 OR7C1O76099 320 aaPredicted RBP18.89■□□□□ 0.61
PNKP-220ENST00000627232 SELEP16581 610 aa18.89■□□□□ 0.61
PNKP-220ENST00000627232 TUBG1P23258 451 aa18.89■□□□□ 0.61
PNKP-220ENST00000627232 OPCMLQ14982 345 aa18.89■□□□□ 0.61
PNKP-220ENST00000627232 P2RY6Q15077 328 aa18.89■□□□□ 0.61
PNKP-220ENST00000627232 SRSF7Q16629 238 aaKnown RBP eCLIP18.89■□□□□ 0.61
PNKP-220ENST00000627232 ZNF660Q6AZW8 331 aaPredicted RBP18.89■□□□□ 0.61
PNKP-220ENST00000627232 DHRS11Q6UWP2 260 aa18.89■□□□□ 0.61
PNKP-220ENST00000627232 CASTOR1Q8WTX7 329 aa18.89■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms