RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 NPBWR2P48146 333 aa13.57□□□□□ -0.24
CPSF1-213ENST00000620219 EDDM3BP56851 147 aa13.57□□□□□ -0.24
CPSF1-213ENST00000620219 SCAND1P57086 179 aa13.57□□□□□ -0.24
CPSF1-213ENST00000620219 NGBQ9NPG2 151 aa13.57□□□□□ -0.24
CPSF1-213ENST00000620219 OR14I1A6ND48 311 aa13.57□□□□□ -0.24
CPSF1-213ENST00000620219 C3orf80F5H4A9 247 aa13.57□□□□□ -0.24
CPSF1-213ENST00000620219 TMEM127O75204 238 aa13.57□□□□□ -0.24
CPSF1-213ENST00000620219 SRSF10O75494 262 aaKnown RBP13.57□□□□□ -0.24
CPSF1-213ENST00000620219 RPS27AP62979 156 aaKnown RBP13.57□□□□□ -0.24
CPSF1-213ENST00000620219 CCDC36Q8IYA8 594 aa13.57□□□□□ -0.24
CPSF1-213ENST00000620219 PLPPR2Q96GM1 343 aa13.57□□□□□ -0.24
CPSF1-213ENST00000620219 SLC5A7Q9GZV3 580 aa13.57□□□□□ -0.24
CPSF1-213ENST00000620219 KCNIP1Q9NZI2 227 aa13.57□□□□□ -0.24
CPSF1-213ENST00000620219 KCNK7Q9Y2U2 307 aa13.57□□□□□ -0.24
CPSF1-213ENST00000620219 A0A0A6YYH2 397 aa13.57□□□□□ -0.24
CPSF1-213ENST00000620219 A6NJ64 397 aa13.57□□□□□ -0.24
CPSF1-213ENST00000620219 SYNGR1O43759 233 aa13.57□□□□□ -0.24
CPSF1-213ENST00000620219 TNFSF4P23510 183 aa13.57□□□□□ -0.24
CPSF1-213ENST00000620219 NFYAP23511 347 aaPredicted RBP13.57□□□□□ -0.24
CPSF1-213ENST00000620219 VRK1Q99986 396 aaPredicted RBP13.57□□□□□ -0.24
CPSF1-213ENST00000620219 L7N2F9 121 aa13.56□□□□□ -0.24
CPSF1-213ENST00000620219 NDUFB6O95139 128 aa13.56□□□□□ -0.24
CPSF1-213ENST00000620219 IFNA21P01568 189 aa13.56□□□□□ -0.24
CPSF1-213ENST00000620219 TK1P04183 234 aa13.56□□□□□ -0.24
CPSF1-213ENST00000620219 PHB2Q99623 299 aa13.56□□□□□ -0.24
CPSF1-213ENST00000620219 PECRQ9BY49 303 aa13.56□□□□□ -0.24
CPSF1-213ENST00000620219 POLDIP2Q9Y2S7 368 aa13.56□□□□□ -0.24
CPSF1-213ENST00000620219 FUT3P21217 361 aa13.56□□□□□ -0.24
CPSF1-213ENST00000620219 CRYGSP22914 178 aa13.56□□□□□ -0.24
CPSF1-213ENST00000620219 P2RY6Q15077 328 aa13.56□□□□□ -0.24
CPSF1-213ENST00000620219 OR8B8Q15620 311 aa13.56□□□□□ -0.24
CPSF1-213ENST00000620219 BEX5Q5H9J7 111 aa13.56□□□□□ -0.24
CPSF1-213ENST00000620219 PRAMEF6Q5VXH4 476 aa13.56□□□□□ -0.24
CPSF1-213ENST00000620219 ZNF826PQ6ZT77 177 aa13.56□□□□□ -0.24
CPSF1-213ENST00000620219 CA5BP1Q8WTZ4 195 aa13.56□□□□□ -0.24
CPSF1-213ENST00000620219 UBE2J1Q9Y385 318 aaPredicted RBP13.56□□□□□ -0.24
CPSF1-213ENST00000620219 EXPH5Q8NEV8 1989 aa13.56□□□□□ -0.24
CPSF1-213ENST00000620219 hCG_38984A0A1B0GV85 526 aa13.56□□□□□ -0.24
CPSF1-213ENST00000620219 F5H5P2 479 aa13.56□□□□□ -0.24
CPSF1-213ENST00000620219 MMP7P09237 267 aaPredicted RBP13.56□□□□□ -0.24
CPSF1-213ENST00000620219 OR5H8P0DN80 308 aa13.56□□□□□ -0.24
CPSF1-213ENST00000620219 GPX8Q8TED1 209 aa13.56□□□□□ -0.24
CPSF1-213ENST00000620219 PRDM14Q9GZV8 571 aa13.56□□□□□ -0.24
CPSF1-213ENST00000620219 PRR13Q9NZ81 148 aa13.56□□□□□ -0.24
CPSF1-213ENST00000620219 SMCO1Q147U7 214 aa13.56□□□□□ -0.24
CPSF1-213ENST00000620219 CALHM1Q8IU99 346 aa13.56□□□□□ -0.24
CPSF1-213ENST00000620219 FAM219AQ8IW50 185 aa13.56□□□□□ -0.24
CPSF1-213ENST00000620219 SLC25A28Q96A46 364 aa13.56□□□□□ -0.24
CPSF1-213ENST00000620219 SLC25A21Q9BQT8 299 aaPredicted RBP13.56□□□□□ -0.24
CPSF1-213ENST00000620219 ZFYVE26Q68DK2 2539 aa13.56□□□□□ -0.24
CPSF1-213ENST00000620219 C16orf97H3BN30 126 aa13.55□□□□□ -0.24
CPSF1-213ENST00000620219 SULT1C2O00338 296 aa13.55□□□□□ -0.24
CPSF1-213ENST00000620219 CTSSP25774 331 aa13.55□□□□□ -0.24
CPSF1-213ENST00000620219 GZMKP49863 264 aa13.55□□□□□ -0.24
CPSF1-213ENST00000620219 CD276Q5ZPR3 534 aa13.55□□□□□ -0.24
CPSF1-213ENST00000620219 NSUN5P2Q63ZY6 315 aa13.55□□□□□ -0.24
CPSF1-213ENST00000620219 FAM58AQ8N1B3 248 aa13.55□□□□□ -0.24
CPSF1-213ENST00000620219 POM121L2Q96KW2 1035 aa13.55□□□□□ -0.24
CPSF1-213ENST00000620219 ZNF436Q9C0F3 470 aaPredicted RBP13.55□□□□□ -0.24
CPSF1-213ENST00000620219 OPA3Q9H6K4 179 aa13.55□□□□□ -0.24
CPSF1-213ENST00000620219 ZNF503-AS2A6NEH8 195 aa13.55□□□□□ -0.24
CPSF1-213ENST00000620219 WRBO00258 174 aa13.55□□□□□ -0.24
CPSF1-213ENST00000620219 DSPP15924 2871 aaKnown RBP13.55□□□□□ -0.24
CPSF1-213ENST00000620219 ATP6V1G2-DDX39BF2Z307 99 aa13.55□□□□□ -0.24
CPSF1-213ENST00000620219 PRF1P14222 555 aa13.55□□□□□ -0.24
CPSF1-213ENST00000620219 IL2RGP31785 369 aa13.55□□□□□ -0.24
CPSF1-213ENST00000620219 GABRA6Q16445 453 aa13.55□□□□□ -0.24
CPSF1-213ENST00000620219 SGPP2Q8IWX5 399 aa13.55□□□□□ -0.24
CPSF1-213ENST00000620219 MUC20Q8N307 709 aaPredicted RBP13.55□□□□□ -0.24
CPSF1-213ENST00000620219 THAP6Q8TBB0 222 aa13.55□□□□□ -0.24
CPSF1-213ENST00000620219 C10orf35Q96D05 121 aa13.55□□□□□ -0.24
CPSF1-213ENST00000620219 RANBP3Q9H6Z4 567 aaPredicted RBP13.55□□□□□ -0.24
CPSF1-213ENST00000620219 TNRC6BQ9UPQ9 1833 aaKnown RBP13.55□□□□□ -0.24
CPSF1-213ENST00000620219 SERPINE3A8MV23 424 aa13.54□□□□□ -0.24
CPSF1-213ENST00000620219 ICMTO60725 284 aa13.54□□□□□ -0.24
CPSF1-213ENST00000620219 SS18L1O75177 396 aaPredicted RBP13.54□□□□□ -0.24
CPSF1-213ENST00000620219 IGHG3P01860 377 aa13.54□□□□□ -0.24
CPSF1-213ENST00000620219 CECR9P0C854 216 aa13.54□□□□□ -0.24
CPSF1-213ENST00000620219 CALCRP30988 508 aa13.54□□□□□ -0.24
CPSF1-213ENST00000620219 SORDQ00796 357 aa13.54□□□□□ -0.24
CPSF1-213ENST00000620219 RBM39Q14498 530 aaKnown RBP13.54□□□□□ -0.24
CPSF1-213ENST00000620219 TMEM229BQ8NBD8 167 aa13.54□□□□□ -0.24
CPSF1-213ENST00000620219 GHITMQ9H3K2 345 aa13.54□□□□□ -0.24
CPSF1-213ENST00000620219 RALYQ9UKM9 306 aaKnown RBP13.54□□□□□ -0.24
CPSF1-213ENST00000620219 MPC1Q9Y5U8 109 aa13.54□□□□□ -0.24
CPSF1-213ENST00000620219 ANKHD1Q8IWZ3 2542 aaKnown RBP13.54□□□□□ -0.24
CPSF1-213ENST00000620219 OR5H1A6NKK0 313 aa13.54□□□□□ -0.24
CPSF1-213ENST00000620219 FCGR2CP31995 323 aa13.54□□□□□ -0.24
CPSF1-213ENST00000620219 RTL6Q6ICC9 239 aa13.54□□□□□ -0.24
CPSF1-213ENST00000620219 OR13G1Q8NGZ3 307 aa13.54□□□□□ -0.24
CPSF1-213ENST00000620219 ARL6Q9H0F7 186 aa13.54□□□□□ -0.24
CPSF1-213ENST00000620219 C1QBP02746 253 aa13.54□□□□□ -0.24
CPSF1-213ENST00000620219 TRAPPC2P0DI81 140 aa13.54□□□□□ -0.24
CPSF1-213ENST00000620219 TRAPPC2BP0DI82 140 aa13.54□□□□□ -0.24
CPSF1-213ENST00000620219 PTGER4P35408 488 aa13.54□□□□□ -0.24
CPSF1-213ENST00000620219 RSPO1Q2MKA7 263 aaPredicted RBP13.54□□□□□ -0.24
CPSF1-213ENST00000620219 TMEM108Q6UXF1 575 aa13.54□□□□□ -0.24
CPSF1-213ENST00000620219 MED12LQ86YW9 2145 aa13.54□□□□□ -0.24
CPSF1-213ENST00000620219 KLF14Q8TD94 323 aaPredicted RBP13.54□□□□□ -0.24
CPSF1-213ENST00000620219 CLCF1Q9UBD9 225 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms