RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 KCNK15Q9H427 330 aa11.16□□□□□ -0.62
LINC00540-202ENST00000616974 C7orf69Q9H7B7 122 aa11.16□□□□□ -0.62
LINC00540-202ENST00000616974 SF3B6Q9Y3B4 125 aaKnown RBP11.16□□□□□ -0.62
LINC00540-202ENST00000616974 ZNF879B4DU55 563 aa11.15□□□□□ -0.62
LINC00540-202ENST00000616974 FSTL3O95633 263 aa11.15□□□□□ -0.62
LINC00540-202ENST00000616974 MED21Q13503 144 aa11.15□□□□□ -0.62
LINC00540-202ENST00000616974 YIF1BQ5BJH7 314 aa11.15□□□□□ -0.62
LINC00540-202ENST00000616974 KLF17Q5JT82 389 aaPredicted RBP11.15□□□□□ -0.62
LINC00540-202ENST00000616974 TPRX1Q8N7U7 411 aa11.15□□□□□ -0.62
LINC00540-202ENST00000616974 ZNF671Q8TAW3 534 aa11.15□□□□□ -0.62
LINC00540-202ENST00000616974 MGLLQ99685 303 aa11.15□□□□□ -0.62
LINC00540-202ENST00000616974 PKIBQ9C010 78 aa11.15□□□□□ -0.62
LINC00540-202ENST00000616974 LRCH1Q9Y2L9 728 aa11.15□□□□□ -0.62
LINC00540-202ENST00000616974 INSIG2Q9Y5U4 225 aa11.15□□□□□ -0.62
LINC00540-202ENST00000616974 SHISA3A0PJX4 238 aa11.15□□□□□ -0.62
LINC00540-202ENST00000616974 NOS1APO75052 506 aaPredicted RBP11.15□□□□□ -0.62
LINC00540-202ENST00000616974 SC5DO75845 299 aa11.15□□□□□ -0.62
LINC00540-202ENST00000616974 OCMP0CE72 109 aaPredicted RBP11.15□□□□□ -0.62
LINC00540-202ENST00000616974 RAB3AP20336 220 aa11.15□□□□□ -0.62
LINC00540-202ENST00000616974 ATP1B3P54709 279 aa11.15□□□□□ -0.62
LINC00540-202ENST00000616974 ACSM3Q53FZ2 586 aa11.15□□□□□ -0.62
LINC00540-202ENST00000616974 PHC2Q8IXK0 858 aa11.15□□□□□ -0.62
LINC00540-202ENST00000616974 PDZD9Q8IXQ8 264 aa11.15□□□□□ -0.62
LINC00540-202ENST00000616974 CHST6Q9GZX3 395 aa11.15□□□□□ -0.62
LINC00540-202ENST00000616974 KAAG1Q9UBP8 84 aa11.15□□□□□ -0.62
LINC00540-202ENST00000616974 TRAV20A0A0B4J274 112 aa11.14□□□□□ -0.63
LINC00540-202ENST00000616974 IGHV2-70DA0A0C4DH43 119 aa11.14□□□□□ -0.63
LINC00540-202ENST00000616974 A0A0G2JMP0 313 aa11.14□□□□□ -0.63
LINC00540-202ENST00000616974 A0A0X1KG70 313 aa11.14□□□□□ -0.63
LINC00540-202ENST00000616974 SIGLEC5O15389 551 aa11.14□□□□□ -0.63
LINC00540-202ENST00000616974 FOXH1O75593 365 aa11.14□□□□□ -0.63
LINC00540-202ENST00000616974 IGHV4-38-2P0DP08 117 aa11.14□□□□□ -0.63
LINC00540-202ENST00000616974 PRKACAP17612 351 aa11.14□□□□□ -0.63
LINC00540-202ENST00000616974 PRDX2P32119 198 aa11.14□□□□□ -0.63
LINC00540-202ENST00000616974 TGFBR2P37173 567 aa11.14□□□□□ -0.63
LINC00540-202ENST00000616974 FABP5Q01469 135 aa11.14□□□□□ -0.63
LINC00540-202ENST00000616974 TBCEQ15813 527 aaPredicted RBP11.14□□□□□ -0.63
LINC00540-202ENST00000616974 DDI2Q5TDH0 399 aa11.14□□□□□ -0.63
LINC00540-202ENST00000616974 LHFPL2Q6ZUX7 228 aa11.14□□□□□ -0.63
LINC00540-202ENST00000616974 NLRC3Q7RTR2 1065 aa11.14□□□□□ -0.63
LINC00540-202ENST00000616974 CCDC54Q8NEL0 328 aa11.14□□□□□ -0.63
LINC00540-202ENST00000616974 TMEM185AQ8NFB2 350 aa11.14□□□□□ -0.63
LINC00540-202ENST00000616974 OR4M2Q8NGB6 313 aa11.14□□□□□ -0.63
LINC00540-202ENST00000616974 OR4M1Q8NGD0 313 aa11.14□□□□□ -0.63
LINC00540-202ENST00000616974 EMG1Q92979 244 aaKnown RBP11.14□□□□□ -0.63
LINC00540-202ENST00000616974 SPSB1Q96BD6 273 aa11.14□□□□□ -0.63
LINC00540-202ENST00000616974 GFI1Q99684 422 aa11.14□□□□□ -0.63
LINC00540-202ENST00000616974 BEX2Q9BXY8 128 aa11.14□□□□□ -0.63
LINC00540-202ENST00000616974 FAM192AQ9GZU8 254 aa11.14□□□□□ -0.63
LINC00540-202ENST00000616974 SHARPINQ9H0F6 387 aa11.14□□□□□ -0.63
LINC00540-202ENST00000616974 POLR3KQ9Y2Y1 108 aaPredicted RBP11.14□□□□□ -0.63
LINC00540-202ENST00000616974 TMEM82A0PJX8 343 aa11.14□□□□□ -0.63
LINC00540-202ENST00000616974 PSPNO60542 156 aa11.14□□□□□ -0.63
LINC00540-202ENST00000616974 ACAA1P09110 424 aaPredicted RBP11.14□□□□□ -0.63
LINC00540-202ENST00000616974 TMEM225BP0DP42 221 aa11.14□□□□□ -0.63
LINC00540-202ENST00000616974 PRKACBP22694 351 aa11.14□□□□□ -0.63
LINC00540-202ENST00000616974 TAS2R43P59537 309 aa11.14□□□□□ -0.63
LINC00540-202ENST00000616974 BDH1Q02338 343 aa11.14□□□□□ -0.63
LINC00540-202ENST00000616974 COL10A1Q03692 680 aa11.14□□□□□ -0.63
LINC00540-202ENST00000616974 CHRFAM7AQ494W8 412 aa11.14□□□□□ -0.63
LINC00540-202ENST00000616974 ATPAF1Q5TC12 328 aaPredicted RBP11.14□□□□□ -0.63
LINC00540-202ENST00000616974 LYPD6Q86Y78 171 aa11.14□□□□□ -0.63
LINC00540-202ENST00000616974 MYCBPQ99417 103 aaPredicted RBP11.14□□□□□ -0.63
LINC00540-202ENST00000616974 NUDT16L1Q9BRJ7 211 aaKnown RBP11.14□□□□□ -0.63
LINC00540-202ENST00000616974 NEK6Q9HC98 313 aa11.14□□□□□ -0.63
LINC00540-202ENST00000616974 C19orf12Q9NSK7 152 aa11.14□□□□□ -0.63
LINC00540-202ENST00000616974 GSTK1Q9Y2Q3 226 aa11.14□□□□□ -0.63
LINC00540-202ENST00000616974 POLDIP2Q9Y2S7 368 aa11.14□□□□□ -0.63
LINC00540-202ENST00000616974 CD2P06729 351 aa11.13□□□□□ -0.63
LINC00540-202ENST00000616974 NDUFB7P17568 137 aa11.13□□□□□ -0.63
LINC00540-202ENST00000616974 ARF6P62330 175 aa11.13□□□□□ -0.63
LINC00540-202ENST00000616974 TPBGQ13641 420 aa11.13□□□□□ -0.63
LINC00540-202ENST00000616974 SMIM21Q3B7S5 101 aa11.13□□□□□ -0.63
LINC00540-202ENST00000616974 PIGYQ3MUY2 71 aa11.13□□□□□ -0.63
LINC00540-202ENST00000616974 C17orf107Q6ZR85 190 aa11.13□□□□□ -0.63
LINC00540-202ENST00000616974 BCL6BQ8N143 479 aaPredicted RBP11.13□□□□□ -0.63
LINC00540-202ENST00000616974 OR4D6Q8NGJ1 314 aa11.13□□□□□ -0.63
LINC00540-202ENST00000616974 HAVCR2Q8TDQ0 301 aa11.13□□□□□ -0.63
LINC00540-202ENST00000616974 TNFAIP8L1Q8WVP5 186 aa11.13□□□□□ -0.63
LINC00540-202ENST00000616974 RAB40AQ8WXH6 277 aa11.13□□□□□ -0.63
LINC00540-202ENST00000616974 H1FXQ92522 213 aaKnown RBP11.13□□□□□ -0.63
LINC00540-202ENST00000616974 C12orf43Q96C57 262 aaKnown RBP11.13□□□□□ -0.63
LINC00540-202ENST00000616974 SLC25A10Q9UBX3 287 aaPredicted RBP11.13□□□□□ -0.63
LINC00540-202ENST00000616974 ZNF737O75373 536 aa11.12□□□□□ -0.63
LINC00540-202ENST00000616974 CPEP16870 476 aa11.12□□□□□ -0.63
LINC00540-202ENST00000616974 GABARAPL2P60520 117 aa11.12□□□□□ -0.63
LINC00540-202ENST00000616974 FGF12P61328 243 aa11.12□□□□□ -0.63
LINC00540-202ENST00000616974 IL13RA1P78552 427 aa11.12□□□□□ -0.63
LINC00540-202ENST00000616974 PAX8Q06710 450 aa11.12□□□□□ -0.63
LINC00540-202ENST00000616974 MLLT11Q13015 90 aaPredicted RBP11.12□□□□□ -0.63
LINC00540-202ENST00000616974 ARMCX4Q5H9R4 360 aa11.12□□□□□ -0.63
LINC00540-202ENST00000616974 UNQ9370/PRO34162Q6UXP9 181 aa11.12□□□□□ -0.63
LINC00540-202ENST00000616974 CEACAM19Q7Z692 300 aa11.12□□□□□ -0.63
LINC00540-202ENST00000616974 RTN4RL2Q86UN3 420 aa11.12□□□□□ -0.63
LINC00540-202ENST00000616974 FAM58AQ8N1B3 248 aa11.12□□□□□ -0.63
LINC00540-202ENST00000616974 UFD1Q92890 307 aa11.12□□□□□ -0.63
LINC00540-202ENST00000616974 SDSLQ96GA7 329 aa11.12□□□□□ -0.63
LINC00540-202ENST00000616974 NR1H4Q96RI1 486 aaPredicted RBP11.12□□□□□ -0.63
LINC00540-202ENST00000616974 GPER1Q99527 375 aa11.12□□□□□ -0.63
LINC00540-202ENST00000616974 DCTN5Q9BTE1 182 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms