RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 PTPMT1Q8WUK0 201 aaPredicted RBP12.41□□□□□ -0.42
CPSF1-212ENST00000616140 OIT3Q8WWZ8 545 aa12.41□□□□□ -0.42
CPSF1-212ENST00000616140 WFDC6Q9BQY6 131 aa12.41□□□□□ -0.42
CPSF1-212ENST00000616140 ADAT1Q9BUB4 502 aaKnown RBP12.41□□□□□ -0.42
CPSF1-212ENST00000616140 WNT16Q9UBV4 365 aa12.41□□□□□ -0.42
CPSF1-212ENST00000616140 MYOFQ9NZM1 2061 aa12.41□□□□□ -0.42
CPSF1-212ENST00000616140 ZNF638Q14966 1978 aaKnown RBP12.41□□□□□ -0.42
CPSF1-212ENST00000616140 ZNF320A2RRD8 509 aa12.41□□□□□ -0.42
CPSF1-212ENST00000616140 MBTPS2O43462 519 aa12.41□□□□□ -0.42
CPSF1-212ENST00000616140 TGOLN2O43493 480 aa12.41□□□□□ -0.42
CPSF1-212ENST00000616140 KCNJ3P48549 501 aa12.41□□□□□ -0.42
CPSF1-212ENST00000616140 DVL1P1P54792 670 aaPredicted RBP12.41□□□□□ -0.42
CPSF1-212ENST00000616140 FAM24BQ8N5W8 94 aa12.41□□□□□ -0.42
CPSF1-212ENST00000616140 ZPLD1Q8TCW7 415 aa12.41□□□□□ -0.42
CPSF1-212ENST00000616140 ASB10Q8WXI3 467 aa12.41□□□□□ -0.42
CPSF1-212ENST00000616140 NMES1Q9C002 83 aa12.41□□□□□ -0.42
CPSF1-212ENST00000616140 TMEM9BQ9NQ34 198 aa12.41□□□□□ -0.42
CPSF1-212ENST00000616140 CCDC187A0A096LP49 1063 aa12.41□□□□□ -0.42
CPSF1-212ENST00000616140 M0R1X1 148 aa12.41□□□□□ -0.42
CPSF1-212ENST00000616140 PHOX2AO14813 284 aa12.41□□□□□ -0.42
CPSF1-212ENST00000616140 FOXS1O43638 330 aa12.41□□□□□ -0.42
CPSF1-212ENST00000616140 SPINK2P20155 84 aa12.41□□□□□ -0.42
CPSF1-212ENST00000616140 NANOS3P60323 173 aaKnown RBP12.41□□□□□ -0.42
CPSF1-212ENST00000616140 GNB1P62873 340 aa12.41□□□□□ -0.42
CPSF1-212ENST00000616140 ALKBH6Q3KRA9 238 aa12.41□□□□□ -0.42
CPSF1-212ENST00000616140 RGS7BPQ6MZT1 257 aaPredicted RBP12.41□□□□□ -0.42
CPSF1-212ENST00000616140 CLEC18BQ6UXF7 455 aa12.41□□□□□ -0.42
CPSF1-212ENST00000616140 OR10V1Q8NGI7 309 aa12.41□□□□□ -0.42
CPSF1-212ENST00000616140 ANXA10Q9UJ72 324 aa12.41□□□□□ -0.42
CPSF1-212ENST00000616140 COL24A1Q17RW2 1714 aa12.41□□□□□ -0.42
CPSF1-212ENST00000616140 A0A1W2PQD3 144 aa12.41□□□□□ -0.42
CPSF1-212ENST00000616140 DVL1O14640 695 aa12.41□□□□□ -0.42
CPSF1-212ENST00000616140 MPGP29372 298 aa12.41□□□□□ -0.42
CPSF1-212ENST00000616140 SRD5A2P31213 254 aa12.41□□□□□ -0.42
CPSF1-212ENST00000616140 RAC3P60763 192 aa12.41□□□□□ -0.42
CPSF1-212ENST00000616140 TFF2Q03403 129 aa12.41□□□□□ -0.42
CPSF1-212ENST00000616140 TRA2AQ13595 282 aaKnown RBP eCLIP12.41□□□□□ -0.42
CPSF1-212ENST00000616140 PRSS27Q9BQR3 290 aa12.41□□□□□ -0.42
CPSF1-212ENST00000616140 CRISPLD2Q9H0B8 497 aa12.41□□□□□ -0.42
CPSF1-212ENST00000616140 FOCADQ5VW36 1801 aa12.4□□□□□ -0.42
CPSF1-212ENST00000616140 C3orf85A0A1B0GTC6 90 aa12.4□□□□□ -0.42
CPSF1-212ENST00000616140 A0A1W2PQF6 199 aa12.4□□□□□ -0.42
CPSF1-212ENST00000616140 ZNF205O95201 554 aa12.4□□□□□ -0.42
CPSF1-212ENST00000616140 ADH4P08319 380 aa12.4□□□□□ -0.42
CPSF1-212ENST00000616140 METTL15P1P0C7V9 234 aa12.4□□□□□ -0.42
CPSF1-212ENST00000616140 EFNB2P52799 333 aa12.4□□□□□ -0.42
CPSF1-212ENST00000616140 INPP5JQ15735 1006 aaPredicted RBP12.4□□□□□ -0.42
CPSF1-212ENST00000616140 HSD17B13Q7Z5P4 300 aaPredicted RBP12.4□□□□□ -0.42
CPSF1-212ENST00000616140 SKA3Q8IX90 412 aa12.4□□□□□ -0.42
CPSF1-212ENST00000616140 KDF1Q8NAX2 398 aaPredicted RBP12.4□□□□□ -0.42
CPSF1-212ENST00000616140 NTNG2Q96CW9 530 aa12.4□□□□□ -0.42
CPSF1-212ENST00000616140 LINC00052Q96N35 136 aa12.4□□□□□ -0.42
CPSF1-212ENST00000616140 LSM2Q9Y333 95 aaKnown RBP12.4□□□□□ -0.42
CPSF1-212ENST00000616140 POLEQ07864 2286 aa12.4□□□□□ -0.42
CPSF1-212ENST00000616140 SOX15O60248 233 aa12.4□□□□□ -0.42
CPSF1-212ENST00000616140 CT45A10P0DMU9 189 aa12.4□□□□□ -0.42
CPSF1-212ENST00000616140 CEACAM6P40199 344 aa12.4□□□□□ -0.42
CPSF1-212ENST00000616140 CSRP3P50461 194 aa12.4□□□□□ -0.42
CPSF1-212ENST00000616140 Q8IYB0 196 aa12.4□□□□□ -0.42
CPSF1-212ENST00000616140 GINS3Q9BRX5 216 aa12.4□□□□□ -0.42
CPSF1-212ENST00000616140 SARGQ9BW04 601 aa12.4□□□□□ -0.42
CPSF1-212ENST00000616140 UQCC1Q9NVA1 299 aa12.4□□□□□ -0.42
CPSF1-212ENST00000616140 CACNG5Q9UF02 275 aa12.4□□□□□ -0.42
CPSF1-212ENST00000616140 GREM1O60565 184 aa12.4□□□□□ -0.42
CPSF1-212ENST00000616140 PTP4A3O75365 173 aa12.4□□□□□ -0.42
CPSF1-212ENST00000616140 POLR2GP62487 172 aaKnown RBP eCLIP12.4□□□□□ -0.42
CPSF1-212ENST00000616140 TMEM267Q0VDI3 215 aaPredicted RBP12.4□□□□□ -0.42
CPSF1-212ENST00000616140 MGAT2Q10469 447 aa12.4□□□□□ -0.42
CPSF1-212ENST00000616140 ZXDCQ2QGD7 858 aaPredicted RBP12.4□□□□□ -0.42
CPSF1-212ENST00000616140 FAHD2BQ6P2I3 314 aaPredicted RBP12.4□□□□□ -0.42
CPSF1-212ENST00000616140 CPEB3Q8NE35 698 aaKnown RBP12.4□□□□□ -0.42
CPSF1-212ENST00000616140 FAHD2AQ96GK7 314 aa12.4□□□□□ -0.42
CPSF1-212ENST00000616140 TAAR6Q96RI8 345 aa12.4□□□□□ -0.42
CPSF1-212ENST00000616140 LEUTXA8MZ59 168 aa12.39□□□□□ -0.43
CPSF1-212ENST00000616140 CLEC3BP05452 202 aa12.39□□□□□ -0.43
CPSF1-212ENST00000616140 MMP16P51512 607 aa12.39□□□□□ -0.43
CPSF1-212ENST00000616140 PRR27Q6MZM9 219 aa12.39□□□□□ -0.43
CPSF1-212ENST00000616140 UBAC2Q8NBM4 344 aa12.39□□□□□ -0.43
CPSF1-212ENST00000616140 TMEM18Q96B42 140 aa12.39□□□□□ -0.43
CPSF1-212ENST00000616140 SLC35B3Q9H1N7 401 aa12.39□□□□□ -0.43
CPSF1-212ENST00000616140 TAAR3PQ9P1P4 343 aa12.39□□□□□ -0.43
CPSF1-212ENST00000616140 ST6GALNAC2Q9UJ37 374 aa12.39□□□□□ -0.43
CPSF1-212ENST00000616140 ACACAQ13085 2346 aa12.39□□□□□ -0.43
CPSF1-212ENST00000616140 C7orf66A4D0T2 115 aa12.39□□□□□ -0.43
CPSF1-212ENST00000616140 SPRY3O43610 288 aa12.39□□□□□ -0.43
CPSF1-212ENST00000616140 RAB40CQ96S21 281 aa12.39□□□□□ -0.43
CPSF1-212ENST00000616140 ZDHHC11Q9H8X9 412 aa12.39□□□□□ -0.43
CPSF1-212ENST00000616140 ZNF17P17021 662 aa12.39□□□□□ -0.43
CPSF1-212ENST00000616140 CLEC9AQ6UXN8 241 aa12.39□□□□□ -0.43
CPSF1-212ENST00000616140 OR2Z1Q8NG97 314 aa12.39□□□□□ -0.43
CPSF1-212ENST00000616140 INTS1Q8N201 2190 aaKnown RBP12.39□□□□□ -0.43
CPSF1-212ENST00000616140 RRP8O43159 456 aaKnown RBP12.39□□□□□ -0.43
CPSF1-212ENST00000616140 FABP1P07148 127 aa12.39□□□□□ -0.43
CPSF1-212ENST00000616140 VSIG8P0DPA2 414 aa12.39□□□□□ -0.43
CPSF1-212ENST00000616140 RAB13P51153 203 aa12.39□□□□□ -0.43
CPSF1-212ENST00000616140 FOXL2P58012 376 aa12.39□□□□□ -0.43
CPSF1-212ENST00000616140 RFLNBQ8N5W9 214 aa12.39□□□□□ -0.43
CPSF1-212ENST00000616140 GPR137Q96N19 417 aa12.39□□□□□ -0.43
CPSF1-212ENST00000616140 PECRQ9BY49 303 aa12.39□□□□□ -0.43
CPSF1-212ENST00000616140 FSCN3Q9NQT6 498 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms