RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 FAHD2AQ96GK7 314 aa12.43□□□□□ -0.42
VRK3-217ENST00000599538 MARS2Q96GW9 593 aaKnown RBP12.43□□□□□ -0.42
VRK3-217ENST00000599538 TECTBQ96PL2 329 aa12.43□□□□□ -0.42
VRK3-217ENST00000599538 CMSS1Q9BQ75 279 aaKnown RBP12.43□□□□□ -0.42
VRK3-217ENST00000599538 ANKRD34BA5PLL1 514 aa12.42□□□□□ -0.42
VRK3-217ENST00000599538 FAM25EA8MYX2 175 aa12.42□□□□□ -0.42
VRK3-217ENST00000599538 ZNF732B4DXR9 585 aa12.42□□□□□ -0.42
VRK3-217ENST00000599538 RGS11O94810 467 aa12.42□□□□□ -0.42
VRK3-217ENST00000599538 DUS4LO95620 317 aaKnown RBP12.42□□□□□ -0.42
VRK3-217ENST00000599538 CST4P01036 141 aa12.42□□□□□ -0.42
VRK3-217ENST00000599538 PDGFAP04085 211 aa12.42□□□□□ -0.42
VRK3-217ENST00000599538 FCGR3AP08637 254 aa12.42□□□□□ -0.42
VRK3-217ENST00000599538 ZNF14P17017 642 aaPredicted RBP12.42□□□□□ -0.42
VRK3-217ENST00000599538 KIR2DL2P43627 348 aaPredicted RBP12.42□□□□□ -0.42
VRK3-217ENST00000599538 ERVS71-1P61550 626 aa12.42□□□□□ -0.42
VRK3-217ENST00000599538 ARL6IP1Q15041 203 aa12.42□□□□□ -0.42
VRK3-217ENST00000599538 CEACAM21Q3KPI0 293 aa12.42□□□□□ -0.42
VRK3-217ENST00000599538 TMEM128Q5BJH2 165 aa12.42□□□□□ -0.42
VRK3-217ENST00000599538 OR2T2Q6IF00 324 aa12.42□□□□□ -0.42
VRK3-217ENST00000599538 C5orf24Q7Z6I8 188 aa12.42□□□□□ -0.42
VRK3-217ENST00000599538 ZDHHC23Q8IYP9 409 aa12.42□□□□□ -0.42
VRK3-217ENST00000599538 OR8H3Q8N146 312 aa12.42□□□□□ -0.42
VRK3-217ENST00000599538 CCDC120Q96HB5 630 aa12.42□□□□□ -0.42
VRK3-217ENST00000599538 MTCH1Q9NZJ7 389 aa12.42□□□□□ -0.42
VRK3-217ENST00000599538 ANXA10Q9UJ72 324 aa12.42□□□□□ -0.42
VRK3-217ENST00000599538 K7EM74 188 aa12.41□□□□□ -0.42
VRK3-217ENST00000599538 AQP7O14520 342 aa12.41□□□□□ -0.42
VRK3-217ENST00000599538 SYNGR1O43759 233 aa12.41□□□□□ -0.42
VRK3-217ENST00000599538 OR7C1O76099 320 aaPredicted RBP12.41□□□□□ -0.42
VRK3-217ENST00000599538 FPR2P25090 351 aa12.41□□□□□ -0.42
VRK3-217ENST00000599538 CLEC18BQ6UXF7 455 aa12.41□□□□□ -0.42
VRK3-217ENST00000599538 TMEM185AQ8NFB2 350 aa12.41□□□□□ -0.42
VRK3-217ENST00000599538 PHB2Q99623 299 aa12.41□□□□□ -0.42
VRK3-217ENST00000599538 C1QTNF6Q9BXI9 259 aa12.41□□□□□ -0.42
VRK3-217ENST00000599538 RFPL4AA6NLU0 287 aa12.41□□□□□ -0.42
VRK3-217ENST00000599538 DBX1A6NMT0 343 aa12.41□□□□□ -0.42
VRK3-217ENST00000599538 HMSDA8MTL9 139 aa12.41□□□□□ -0.42
VRK3-217ENST00000599538 RFPL4AL1F8VTS6 287 aa12.41□□□□□ -0.42
VRK3-217ENST00000599538 CD8AP01732 235 aa12.41□□□□□ -0.42
VRK3-217ENST00000599538 IDH3GP51553 393 aaPredicted RBP12.41□□□□□ -0.42
VRK3-217ENST00000599538 AP2S1P53680 142 aaPredicted RBP12.41□□□□□ -0.42
VRK3-217ENST00000599538 PPA1Q15181 289 aa12.41□□□□□ -0.42
VRK3-217ENST00000599538 ZNF660Q6AZW8 331 aaPredicted RBP12.41□□□□□ -0.42
VRK3-217ENST00000599538 ASCL5Q7RTU5 278 aa12.41□□□□□ -0.42
VRK3-217ENST00000599538 MRPS24Q96EL2 167 aaKnown RBP12.41□□□□□ -0.42
VRK3-217ENST00000599538 ZNF488Q96MN9 340 aa12.41□□□□□ -0.42
VRK3-217ENST00000599538 ZNF2Q9BSG1 426 aaPredicted RBP12.41□□□□□ -0.42
VRK3-217ENST00000599538 PDCD10Q9BUL8 212 aa12.41□□□□□ -0.42
VRK3-217ENST00000599538 CLEC4MQ9H2X3 399 aaPredicted RBP12.41□□□□□ -0.42
VRK3-217ENST00000599538 ARID1AO14497 2285 aa12.4□□□□□ -0.42
VRK3-217ENST00000599538 MPTX1A8MV57 137 aa12.4□□□□□ -0.42
VRK3-217ENST00000599538 EEF1E1-BLOC1S5C9J1V9 151 aa12.4□□□□□ -0.42
VRK3-217ENST00000599538 PDCD6O75340 191 aa12.4□□□□□ -0.42
VRK3-217ENST00000599538 RPS2P15880 293 aaKnown RBP12.4□□□□□ -0.42
VRK3-217ENST00000599538 HLA-GP17693 338 aa12.4□□□□□ -0.42
VRK3-217ENST00000599538 DUSP1P28562 367 aa12.4□□□□□ -0.42
VRK3-217ENST00000599538 ARPC4P59998 168 aa12.4□□□□□ -0.42
VRK3-217ENST00000599538 SRSF4Q08170 494 aaKnown RBP12.4□□□□□ -0.42
VRK3-217ENST00000599538 ANKRD55Q3KP44 614 aa12.4□□□□□ -0.42
VRK3-217ENST00000599538 RTL6Q6ICC9 239 aa12.4□□□□□ -0.42
VRK3-217ENST00000599538 TMUB2Q71RG4 321 aa12.4□□□□□ -0.42
VRK3-217ENST00000599538 TMEM17Q86X19 198 aa12.4□□□□□ -0.42
VRK3-217ENST00000599538 PPP1R1CQ8WVI7 109 aa12.4□□□□□ -0.42
VRK3-217ENST00000599538 PLSCR2Q9NRY7 297 aa12.4□□□□□ -0.42
VRK3-217ENST00000599538 DKK4Q9UBT3 224 aa12.4□□□□□ -0.42
VRK3-217ENST00000599538 MAP1BP46821 2468 aaKnown RBP12.4□□□□□ -0.42
VRK3-217ENST00000599538 ANKRD11Q6UB99 2663 aaPredicted RBP12.4□□□□□ -0.42
VRK3-217ENST00000599538 ADAP1O75689 374 aa12.4□□□□□ -0.43
VRK3-217ENST00000599538 KNG1P01042 644 aa12.4□□□□□ -0.43
VRK3-217ENST00000599538 CA6P23280 308 aa12.4□□□□□ -0.43
VRK3-217ENST00000599538 S100A11P31949 105 aa12.4□□□□□ -0.43
VRK3-217ENST00000599538 GABRA6Q16445 453 aa12.4□□□□□ -0.43
VRK3-217ENST00000599538 Q8NFD4 153 aa12.4□□□□□ -0.43
VRK3-217ENST00000599538 NANOS1Q8WY41 292 aaKnown RBP12.4□□□□□ -0.43
VRK3-217ENST00000599538 OR5P3Q8WZ94 311 aa12.4□□□□□ -0.43
VRK3-217ENST00000599538 CITED4Q96RK1 184 aa12.4□□□□□ -0.43
VRK3-217ENST00000599538 ARL6Q9H0F7 186 aa12.4□□□□□ -0.43
VRK3-217ENST00000599538 LUZP4Q9P127 313 aa12.4□□□□□ -0.43
VRK3-217ENST00000599538 RPS10-NUDT3A0A1W2PQS6 291 aa12.39□□□□□ -0.43
VRK3-217ENST00000599538 KLK10O43240 276 aa12.39□□□□□ -0.43
VRK3-217ENST00000599538 SFT2D2O95562 160 aa12.39□□□□□ -0.43
VRK3-217ENST00000599538 OR5H8P0DN80 308 aa12.39□□□□□ -0.43
VRK3-217ENST00000599538 TAS2R31P59538 309 aa12.39□□□□□ -0.43
VRK3-217ENST00000599538 ALKBH6Q3KRA9 238 aa12.39□□□□□ -0.43
VRK3-217ENST00000599538 HAGHLQ6PII5 290 aaPredicted RBP12.39□□□□□ -0.43
VRK3-217ENST00000599538 Q6ZT83 130 aa12.39□□□□□ -0.43
VRK3-217ENST00000599538 FAM219AQ8IW50 185 aa12.39□□□□□ -0.43
VRK3-217ENST00000599538 ZADH2Q8N4Q0 377 aa12.39□□□□□ -0.43
VRK3-217ENST00000599538 OR2J1Q9GZK6 312 aa12.39□□□□□ -0.43
VRK3-217ENST00000599538 MFFQ9GZY8 342 aa12.39□□□□□ -0.43
VRK3-217ENST00000599538 GLRX2Q9NS18 164 aa12.39□□□□□ -0.43
VRK3-217ENST00000599538 APC2O95996 2303 aa12.39□□□□□ -0.43
VRK3-217ENST00000599538 CUL9Q8IWT3 2517 aa12.39□□□□□ -0.43
VRK3-217ENST00000599538 C13orf42A0A1B0GVH6 325 aa12.38□□□□□ -0.43
VRK3-217ENST00000599538 RRP8O43159 456 aaKnown RBP12.38□□□□□ -0.43
VRK3-217ENST00000599538 KCNAB3O43448 404 aa12.38□□□□□ -0.43
VRK3-217ENST00000599538 AGFG2O95081 481 aa12.38□□□□□ -0.43
VRK3-217ENST00000599538 FUT3P21217 361 aa12.38□□□□□ -0.43
VRK3-217ENST00000599538 DTYMKP23919 212 aa12.38□□□□□ -0.43
VRK3-217ENST00000599538 SERPINF1P36955 418 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms