RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 OR10Z1Q8NGY1 313 aa12.37□□□□□ -0.43
VRK3-212ENST00000596814 SOSTQ9BQB4 213 aa12.37□□□□□ -0.43
VRK3-212ENST00000596814 PPP1R3CQ9UQK1 317 aa12.37□□□□□ -0.43
VRK3-212ENST00000596814 LAMP3Q9UQV4 416 aa12.37□□□□□ -0.43
VRK3-212ENST00000596814 ST3GAL6Q9Y274 331 aa12.37□□□□□ -0.43
VRK3-212ENST00000596814 TANC2Q9HCD6 1990 aa12.37□□□□□ -0.43
VRK3-212ENST00000596814 USP9YO00507 2555 aaPredicted RBP12.37□□□□□ -0.43
VRK3-212ENST00000596814 A0A0G2JMP0 313 aa12.37□□□□□ -0.43
VRK3-212ENST00000596814 A0A0X1KG70 313 aa12.37□□□□□ -0.43
VRK3-212ENST00000596814 RAB27BO00194 218 aa12.37□□□□□ -0.43
VRK3-212ENST00000596814 GABRR1P24046 479 aa12.37□□□□□ -0.43
VRK3-212ENST00000596814 PTBP1P26599 531 aaKnown RBP eCLIP12.37□□□□□ -0.43
VRK3-212ENST00000596814 CFHR2P36980 270 aa12.37□□□□□ -0.43
VRK3-212ENST00000596814 PMELP40967 661 aa12.37□□□□□ -0.43
VRK3-212ENST00000596814 SNU13P55769 128 aaKnown RBP12.37□□□□□ -0.43
VRK3-212ENST00000596814 TAS2R20P59543 309 aa12.37□□□□□ -0.43
VRK3-212ENST00000596814 GMFBP60983 142 aa12.37□□□□□ -0.43
VRK3-212ENST00000596814 ZNF79Q15937 498 aa12.37□□□□□ -0.43
VRK3-212ENST00000596814 MOGAT2Q3SYC2 334 aa12.37□□□□□ -0.43
VRK3-212ENST00000596814 NHLRC3Q5JS37 347 aa12.37□□□□□ -0.43
VRK3-212ENST00000596814 PYHIN1Q6K0P9 492 aa12.37□□□□□ -0.43
VRK3-212ENST00000596814 OR4M2Q8NGB6 313 aa12.37□□□□□ -0.43
VRK3-212ENST00000596814 OR11L1Q8NGX0 322 aa12.37□□□□□ -0.43
VRK3-212ENST00000596814 Q8TCH9 128 aa12.37□□□□□ -0.43
VRK3-212ENST00000596814 CACNG6Q9BXT2 260 aa12.37□□□□□ -0.43
VRK3-212ENST00000596814 RABL2AQ9UBK7 228 aaPredicted RBP12.37□□□□□ -0.43
VRK3-212ENST00000596814 RABL2BQ9UNT1 228 aa12.37□□□□□ -0.43
VRK3-212ENST00000596814 MRPS7Q9Y2R9 242 aaKnown RBP12.37□□□□□ -0.43
VRK3-212ENST00000596814 DYSFO75923 2080 aa12.36□□□□□ -0.43
VRK3-212ENST00000596814 DSCAMO60469 2012 aa12.36□□□□□ -0.43
VRK3-212ENST00000596814 SRRM5B3KS81 715 aa12.36□□□□□ -0.43
VRK3-212ENST00000596814 GEMIN2O14893 280 aaKnown RBP12.36□□□□□ -0.43
VRK3-212ENST00000596814 IRF2P14316 349 aa12.36□□□□□ -0.43
VRK3-212ENST00000596814 GLRA1P23415 457 aa12.36□□□□□ -0.43
VRK3-212ENST00000596814 TAF9Q16594 264 aa12.36□□□□□ -0.43
VRK3-212ENST00000596814 C20orf204Q6ZNR8 217 aa12.36□□□□□ -0.43
VRK3-212ENST00000596814 FAM89BQ8N5H3 189 aa12.36□□□□□ -0.43
VRK3-212ENST00000596814 OR10R2Q8NGX6 335 aa12.36□□□□□ -0.43
VRK3-212ENST00000596814 HPS1Q92902 700 aa12.36□□□□□ -0.43
VRK3-212ENST00000596814 NUDT16L1Q9BRJ7 211 aaKnown RBP12.36□□□□□ -0.43
VRK3-212ENST00000596814 RAB1BQ9H0U4 201 aa12.36□□□□□ -0.43
VRK3-212ENST00000596814 PLEKHF2Q9H8W4 249 aa12.36□□□□□ -0.43
VRK3-212ENST00000596814 HES4Q9HCC6 221 aa12.36□□□□□ -0.43
VRK3-212ENST00000596814 IL36RNQ9UBH0 155 aa12.36□□□□□ -0.43
VRK3-212ENST00000596814 DOPEY2Q9Y3R5 2298 aa12.35□□□□□ -0.43
VRK3-212ENST00000596814 TRAV18A0A075B6X5 111 aa12.35□□□□□ -0.43
VRK3-212ENST00000596814 C3orf80F5H4A9 247 aa12.35□□□□□ -0.43
VRK3-212ENST00000596814 WNT9BO14905 357 aa12.35□□□□□ -0.43
VRK3-212ENST00000596814 SOCS1O15524 211 aa12.35□□□□□ -0.43
VRK3-212ENST00000596814 MNDAP41218 407 aa12.35□□□□□ -0.43
VRK3-212ENST00000596814 PTH2RP49190 550 aa12.35□□□□□ -0.43
VRK3-212ENST00000596814 PITPNAQ00169 270 aa12.35□□□□□ -0.43
VRK3-212ENST00000596814 IL13RA2Q14627 380 aa12.35□□□□□ -0.43
VRK3-212ENST00000596814 SMIM21Q3B7S5 101 aa12.35□□□□□ -0.43
VRK3-212ENST00000596814 FIP1L1Q6UN15 594 aaKnown RBP12.35□□□□□ -0.43
VRK3-212ENST00000596814 LINC00596Q86U02 117 aa12.35□□□□□ -0.43
VRK3-212ENST00000596814 SNX29P2Q8IUI4 249 aa12.35□□□□□ -0.43
VRK3-212ENST00000596814 GCSAMQ8N6F7 178 aa12.35□□□□□ -0.43
VRK3-212ENST00000596814 CHST4Q8NCG5 386 aa12.35□□□□□ -0.43
VRK3-212ENST00000596814 POM121Q96HA1 1249 aa12.35□□□□□ -0.43
VRK3-212ENST00000596814 SRRQ9GZT4 340 aa12.35□□□□□ -0.43
VRK3-212ENST00000596814 TREM2Q9NZC2 230 aa12.35□□□□□ -0.43
VRK3-212ENST00000596814 RNF7Q9UBF6 113 aa12.35□□□□□ -0.43
VRK3-212ENST00000596814 NPTNQ9Y639 398 aa12.35□□□□□ -0.43
VRK3-212ENST00000596814 UTP20O75691 2785 aaKnown RBP12.35□□□□□ -0.43
VRK3-212ENST00000596814 FAM90A10PA6NDY2 464 aa12.34□□□□□ -0.43
VRK3-212ENST00000596814 FAM90A18PA6NE21 464 aa12.34□□□□□ -0.43
VRK3-212ENST00000596814 FAM90A16PA6NEW6 464 aa12.34□□□□□ -0.43
VRK3-212ENST00000596814 FAM90A20PA6NIJ5 464 aa12.34□□□□□ -0.43
VRK3-212ENST00000596814 FAM90A8PA6NJQ4 464 aa12.34□□□□□ -0.43
VRK3-212ENST00000596814 FAM90A7PA6NKC0 464 aa12.34□□□□□ -0.43
VRK3-212ENST00000596814 LRRC30A6NM36 301 aa12.34□□□□□ -0.43
VRK3-212ENST00000596814 FAM90A22PA8MWA6 464 aa12.34□□□□□ -0.43
VRK3-212ENST00000596814 FAM90A12PA8MX19 464 aa12.34□□□□□ -0.43
VRK3-212ENST00000596814 FAM90A5PA8MXJ8 464 aa12.34□□□□□ -0.43
VRK3-212ENST00000596814 FAM90A23PA8MXZ1 464 aa12.34□□□□□ -0.43
VRK3-212ENST00000596814 J3QRK9 145 aa12.34□□□□□ -0.43
VRK3-212ENST00000596814 TPPPO94811 219 aa12.34□□□□□ -0.43
VRK3-212ENST00000596814 HPXP02790 462 aa12.34□□□□□ -0.43
VRK3-212ENST00000596814 FAM90A15PP0C7V4 464 aa12.34□□□□□ -0.43
VRK3-212ENST00000596814 FAM90A13PP0C7W8 464 aa12.34□□□□□ -0.43
VRK3-212ENST00000596814 FAM90A14PP0C7W9 464 aa12.34□□□□□ -0.43
VRK3-212ENST00000596814 FAM90A24PP0C7X0 464 aa12.34□□□□□ -0.43
VRK3-212ENST00000596814 EGR1P18146 543 aa12.34□□□□□ -0.43
VRK3-212ENST00000596814 COL8A1P27658 744 aa12.34□□□□□ -0.43
VRK3-212ENST00000596814 CD40LGP29965 261 aa12.34□□□□□ -0.43
VRK3-212ENST00000596814 BLVRBP30043 206 aaPredicted RBP12.34□□□□□ -0.43
VRK3-212ENST00000596814 PPP5CP53041 499 aa12.34□□□□□ -0.43
VRK3-212ENST00000596814 HOXA4Q00056 320 aaPredicted RBP12.34□□□□□ -0.43
VRK3-212ENST00000596814 ZNF181Q2M3W8 571 aa12.34□□□□□ -0.43
VRK3-212ENST00000596814 MPV17LQ2QL34 196 aa12.34□□□□□ -0.43
VRK3-212ENST00000596814 PYDC2Q56P42 97 aa12.34□□□□□ -0.43
VRK3-212ENST00000596814 ACP7Q6ZNF0 438 aa12.34□□□□□ -0.43
VRK3-212ENST00000596814 BOLLQ8N9W6 283 aaKnown RBP12.34□□□□□ -0.43
VRK3-212ENST00000596814 C15orf40Q8WUR7 153 aa12.34□□□□□ -0.43
VRK3-212ENST00000596814 RAB3CQ96E17 227 aa12.34□□□□□ -0.43
VRK3-212ENST00000596814 ABHD1Q96SE0 405 aa12.34□□□□□ -0.43
VRK3-212ENST00000596814 WDR13Q9H1Z4 485 aa12.34□□□□□ -0.43
VRK3-212ENST00000596814 RASL12Q9NYN1 266 aa12.34□□□□□ -0.43
VRK3-212ENST00000596814 FOXI3A8MTJ6 420 aaPredicted RBP12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms