RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 RRP9O43818 475 aaKnown RBP9.19□□□□□ -0.94
LIG1-211ENST00000596457 NOS1APO75052 506 aaPredicted RBP9.19□□□□□ -0.94
LIG1-211ENST00000596457 FCN3O75636 299 aa9.19□□□□□ -0.94
LIG1-211ENST00000596457 RGS9O75916 674 aaPredicted RBP9.19□□□□□ -0.94
LIG1-211ENST00000596457 PRKACAP17612 351 aa9.19□□□□□ -0.94
LIG1-211ENST00000596457 DUSP1P28562 367 aa9.19□□□□□ -0.94
LIG1-211ENST00000596457 NPBWR2P48146 333 aa9.19□□□□□ -0.94
LIG1-211ENST00000596457 PPP3R1P63098 170 aa9.19□□□□□ -0.94
LIG1-211ENST00000596457 PDZK1IP1Q13113 114 aa9.19□□□□□ -0.94
LIG1-211ENST00000596457 SPHARQ15513 63 aa9.19□□□□□ -0.94
LIG1-211ENST00000596457 KISS1Q15726 138 aa9.19□□□□□ -0.94
LIG1-211ENST00000596457 DGUOKQ16854 277 aa9.19□□□□□ -0.94
LIG1-211ENST00000596457 Q499Y3 187 aa9.19□□□□□ -0.94
LIG1-211ENST00000596457 YIF1BQ5BJH7 314 aa9.19□□□□□ -0.94
LIG1-211ENST00000596457 ARMCX4Q5H9R4 360 aa9.19□□□□□ -0.94
LIG1-211ENST00000596457 ATPAF1Q5TC12 328 aaPredicted RBP9.19□□□□□ -0.94
LIG1-211ENST00000596457 RNLSQ5VYX0 342 aa9.19□□□□□ -0.94
LIG1-211ENST00000596457 CD177Q8N6Q3 437 aa9.19□□□□□ -0.94
LIG1-211ENST00000596457 NANPQ8TBE9 248 aa9.19□□□□□ -0.94
LIG1-211ENST00000596457 TMEM158Q8WZ71 300 aa9.19□□□□□ -0.94
LIG1-211ENST00000596457 PGLYRP3Q96LB9 341 aa9.19□□□□□ -0.94
LIG1-211ENST00000596457 OR14A2Q96R54 314 aa9.19□□□□□ -0.94
LIG1-211ENST00000596457 NRIP2Q9BQI9 281 aa9.19□□□□□ -0.94
LIG1-211ENST00000596457 TMED9Q9BVK6 235 aa9.19□□□□□ -0.94
LIG1-211ENST00000596457 FAM192AQ9GZU8 254 aa9.19□□□□□ -0.94
LIG1-211ENST00000596457 DUSP21Q9H596 190 aa9.19□□□□□ -0.94
LIG1-211ENST00000596457 OCEL1Q9H607 264 aa9.19□□□□□ -0.94
LIG1-211ENST00000596457 RBFOX1Q9NWB1 397 aaKnown RBP9.19□□□□□ -0.94
LIG1-211ENST00000596457 OPN4Q9UHM6 478 aa9.19□□□□□ -0.94
LIG1-211ENST00000596457 BLOC1S6Q9UL45 172 aa9.19□□□□□ -0.94
LIG1-211ENST00000596457 TRBV5-5A0A0J9YX44 114 aa9.18□□□□□ -0.94
LIG1-211ENST00000596457 A0A1W2PQ09 198 aa9.18□□□□□ -0.94
LIG1-211ENST00000596457 SIGLEC5O15389 551 aa9.18□□□□□ -0.94
LIG1-211ENST00000596457 DENRO43583 198 aaKnown RBP9.18□□□□□ -0.94
LIG1-211ENST00000596457 MAS1P04201 325 aa9.18□□□□□ -0.94
LIG1-211ENST00000596457 PPIAL4GP0DN37 164 aa9.18□□□□□ -0.94
LIG1-211ENST00000596457 BDKRB2P30411 391 aa9.18□□□□□ -0.94
LIG1-211ENST00000596457 TGFBR2P37173 567 aa9.18□□□□□ -0.94
LIG1-211ENST00000596457 FGF12P61328 243 aa9.18□□□□□ -0.94
LIG1-211ENST00000596457 ERVK11-1P61568 191 aa9.18□□□□□ -0.94
LIG1-211ENST00000596457 RPS11P62280 158 aaKnown RBP eCLIP9.18□□□□□ -0.94
LIG1-211ENST00000596457 ARF6P62330 175 aa9.18□□□□□ -0.94
LIG1-211ENST00000596457 PAX2Q02962 417 aa9.18□□□□□ -0.94
LIG1-211ENST00000596457 COL10A1Q03692 680 aa9.18□□□□□ -0.94
LIG1-211ENST00000596457 PAX8Q06710 450 aa9.18□□□□□ -0.94
LIG1-211ENST00000596457 SCN1BQ07699 218 aa9.18□□□□□ -0.94
LIG1-211ENST00000596457 IRF3Q14653 427 aa9.18□□□□□ -0.94
LIG1-211ENST00000596457 DDI2Q5TDH0 399 aa9.18□□□□□ -0.94
LIG1-211ENST00000596457 LIPKQ5VXJ0 399 aa9.18□□□□□ -0.94
LIG1-211ENST00000596457 FIP1L1Q6UN15 594 aaKnown RBP9.18□□□□□ -0.94
LIG1-211ENST00000596457 PRSS48Q7RTY5 328 aa9.18□□□□□ -0.94
LIG1-211ENST00000596457 C1QL2Q7Z5L3 287 aa9.18□□□□□ -0.94
LIG1-211ENST00000596457 FAM58AQ8N1B3 248 aa9.18□□□□□ -0.94
LIG1-211ENST00000596457 ASCC1Q8N9N2 400 aaKnown RBP9.18□□□□□ -0.94
LIG1-211ENST00000596457 PNLDC1Q8NA58 520 aaKnown RBP9.18□□□□□ -0.94
LIG1-211ENST00000596457 OR52N4Q8NGI2 321 aa9.18□□□□□ -0.94
LIG1-211ENST00000596457 C22orf15Q8WYQ4 148 aa9.18□□□□□ -0.94
LIG1-211ENST00000596457 UFD1Q92890 307 aa9.18□□□□□ -0.94
LIG1-211ENST00000596457 NR1H4Q96RI1 486 aaPredicted RBP9.18□□□□□ -0.94
LIG1-211ENST00000596457 PCGF1Q9BSM1 259 aa9.18□□□□□ -0.94
LIG1-211ENST00000596457 DNTTIP1Q9H147 329 aa9.18□□□□□ -0.94
LIG1-211ENST00000596457 ONECUT1Q9UBC0 465 aa9.18□□□□□ -0.94
LIG1-211ENST00000596457 IL36RNQ9UBH0 155 aa9.18□□□□□ -0.94
LIG1-211ENST00000596457 CKLFQ9UBR5 152 aa9.18□□□□□ -0.94
LIG1-211ENST00000596457 ZNF222Q9UK12 451 aa9.18□□□□□ -0.94
LIG1-211ENST00000596457 ING4Q9UNL4 249 aa9.18□□□□□ -0.94
LIG1-211ENST00000596457 GSTK1Q9Y2Q3 226 aa9.18□□□□□ -0.94
LIG1-211ENST00000596457 LSM2Q9Y333 95 aaKnown RBP9.18□□□□□ -0.94
LIG1-211ENST00000596457 MAB21L2Q9Y586 359 aa9.18□□□□□ -0.94
LIG1-211ENST00000596457 IGKV1-12A0A0C4DH73 117 aa9.17□□□□□ -0.94
LIG1-211ENST00000596457 ZNF879B4DU55 563 aa9.17□□□□□ -0.94
LIG1-211ENST00000596457 TOX4O94842 621 aa9.17□□□□□ -0.94
LIG1-211ENST00000596457 ECDO95905 644 aaPredicted RBP9.17□□□□□ -0.94
LIG1-211ENST00000596457 KNG1P01042 644 aa9.17□□□□□ -0.94
LIG1-211ENST00000596457 IGKV1D-12P01611 117 aa9.17□□□□□ -0.94
LIG1-211ENST00000596457 SRSF2Q01130 221 aaKnown RBP9.17□□□□□ -0.94
LIG1-211ENST00000596457 BDH1Q02338 343 aa9.17□□□□□ -0.94
LIG1-211ENST00000596457 ACSM1Q08AH1 577 aa9.17□□□□□ -0.94
LIG1-211ENST00000596457 INSL4Q14641 139 aa9.17□□□□□ -0.94
LIG1-211ENST00000596457 PDCD1Q15116 288 aa9.17□□□□□ -0.94
LIG1-211ENST00000596457 METTL11BQ5VVY1 283 aa9.17□□□□□ -0.94
LIG1-211ENST00000596457 ASPHD2Q6ICH7 369 aa9.17□□□□□ -0.94
LIG1-211ENST00000596457 Q8IYB0 196 aa9.17□□□□□ -0.94
LIG1-211ENST00000596457 FAM185AQ8N0U4 392 aa9.17□□□□□ -0.94
LIG1-211ENST00000596457 ZNF561Q8N587 486 aa9.17□□□□□ -0.94
LIG1-211ENST00000596457 TEX29Q8N6K0 151 aa9.17□□□□□ -0.94
LIG1-211ENST00000596457 OR4M1Q8NGD0 313 aa9.17□□□□□ -0.94
LIG1-211ENST00000596457 OR10K1Q8NGX5 313 aa9.17□□□□□ -0.94
LIG1-211ENST00000596457 TNFAIP8L1Q8WVP5 186 aa9.17□□□□□ -0.94
LIG1-211ENST00000596457 TMEM203Q969S6 136 aa9.17□□□□□ -0.94
LIG1-211ENST00000596457 CPNE2Q96FN4 548 aaPredicted RBP9.17□□□□□ -0.94
LIG1-211ENST00000596457 S100A13Q99584 98 aa9.17□□□□□ -0.94
LIG1-211ENST00000596457 CNTD2Q9H8S5 307 aa9.17□□□□□ -0.94
LIG1-211ENST00000596457 HES4Q9HCC6 221 aa9.17□□□□□ -0.94
LIG1-211ENST00000596457 NOX4Q9NPH5 578 aa9.17□□□□□ -0.94
LIG1-211ENST00000596457 GLS2Q9UI32 602 aa9.17□□□□□ -0.94
LIG1-211ENST00000596457 RPUSD1Q9UJJ7 312 aaKnown RBP9.17□□□□□ -0.94
LIG1-211ENST00000596457 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.17□□□□□ -0.942e-6■■■■□ 24.3
LIG1-211ENST00000596457 SONP18583 2426 aaKnown RBP9.16□□□□□ -0.94
LIG1-211ENST00000596457 TRAV8-7A0A075B6U6 113 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms