RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 CCDC159P0C7I6 412 aa12.39□□□□□ -0.43
TRIM28-205ENST00000595028 POU3F4P49335 361 aa12.39□□□□□ -0.43
TRIM28-205ENST00000595028 ATP1B3P54709 279 aa12.39□□□□□ -0.43
TRIM28-205ENST00000595028 ADARB1P78563 741 aaKnown RBP12.39□□□□□ -0.43
TRIM28-205ENST00000595028 GUCA2AQ02747 115 aa12.39□□□□□ -0.43
TRIM28-205ENST00000595028 PRB3Q04118 309 aaPredicted RBP12.39□□□□□ -0.43
TRIM28-205ENST00000595028 AWAT1Q58HT5 328 aa12.39□□□□□ -0.43
TRIM28-205ENST00000595028 Q6YL49 198 aa12.39□□□□□ -0.43
TRIM28-205ENST00000595028 C1orf122Q6ZSJ8 110 aa12.39□□□□□ -0.43
TRIM28-205ENST00000595028 LHFPL2Q6ZUX7 228 aa12.39□□□□□ -0.43
TRIM28-205ENST00000595028 PIP4P2Q8N4L2 257 aa12.39□□□□□ -0.43
TRIM28-205ENST00000595028 SETD9Q8NE22 299 aa12.39□□□□□ -0.43
TRIM28-205ENST00000595028 OR13C9Q8NGT0 318 aa12.39□□□□□ -0.43
TRIM28-205ENST00000595028 TNFRSF14Q92956 283 aa12.39□□□□□ -0.43
TRIM28-205ENST00000595028 FAM234AQ9H0X4 552 aa12.39□□□□□ -0.43
TRIM28-205ENST00000595028 METTL8Q9H825 291 aaKnown RBP12.39□□□□□ -0.43
TRIM28-205ENST00000595028 UNKLQ9H9P5 680 aaKnown RBP12.39□□□□□ -0.43
TRIM28-205ENST00000595028 IRGMA1A4Y4 181 aa12.38□□□□□ -0.43
TRIM28-205ENST00000595028 ANKRD65E5RJM6 399 aa12.38□□□□□ -0.43
TRIM28-205ENST00000595028 CASQ2O14958 399 aaPredicted RBP12.38□□□□□ -0.43
TRIM28-205ENST00000595028 RPSAP08865 295 aaKnown RBP12.38□□□□□ -0.43
TRIM28-205ENST00000595028 DCKP27707 260 aa12.38□□□□□ -0.43
TRIM28-205ENST00000595028 GBX2P52951 348 aaPredicted RBP12.38□□□□□ -0.43
TRIM28-205ENST00000595028 DLX1P56177 255 aa12.38□□□□□ -0.43
TRIM28-205ENST00000595028 MTCP1P56278 107 aa12.38□□□□□ -0.43
TRIM28-205ENST00000595028 KLRD1Q13241 179 aa12.38□□□□□ -0.43
TRIM28-205ENST00000595028 IL18R1Q13478 541 aa12.38□□□□□ -0.43
TRIM28-205ENST00000595028 BLMHQ13867 455 aa12.38□□□□□ -0.43
TRIM28-205ENST00000595028 OGFRL1Q5TC84 451 aaPredicted RBP12.38□□□□□ -0.43
TRIM28-205ENST00000595028 NCR3LG1Q68D85 454 aa12.38□□□□□ -0.43
TRIM28-205ENST00000595028 LDLRAD3Q86YD5 345 aa12.38□□□□□ -0.43
TRIM28-205ENST00000595028 Q8IYB0 196 aa12.38□□□□□ -0.43
TRIM28-205ENST00000595028 DHRSXQ8N5I4 330 aa12.38□□□□□ -0.43
TRIM28-205ENST00000595028 TMEM86BQ8N661 226 aa12.38□□□□□ -0.43
TRIM28-205ENST00000595028 C3orf56Q8N813 242 aa12.38□□□□□ -0.43
TRIM28-205ENST00000595028 EMG1Q92979 244 aaKnown RBP12.38□□□□□ -0.43
TRIM28-205ENST00000595028 PDCD1LG2Q9BQ51 273 aa12.38□□□□□ -0.43
TRIM28-205ENST00000595028 COMMD4Q9H0A8 199 aa12.38□□□□□ -0.43
TRIM28-205ENST00000595028 TRBV2A0A0J9YWF9 115 aa12.37□□□□□ -0.43
TRIM28-205ENST00000595028 ZNF737O75373 536 aa12.37□□□□□ -0.43
TRIM28-205ENST00000595028 INMTO95050 263 aa12.37□□□□□ -0.43
TRIM28-205ENST00000595028 CYB5AP00167 134 aa12.37□□□□□ -0.43
TRIM28-205ENST00000595028 MT-ND2P03891 347 aa12.37□□□□□ -0.43
TRIM28-205ENST00000595028 TK1P04183 234 aa12.37□□□□□ -0.43
TRIM28-205ENST00000595028 OCM2P0CE71 109 aa12.37□□□□□ -0.43
TRIM28-205ENST00000595028 OCMP0CE72 109 aaPredicted RBP12.37□□□□□ -0.43
TRIM28-205ENST00000595028 EEF1B2P24534 225 aaKnown RBP12.37□□□□□ -0.43
TRIM28-205ENST00000595028 ETV1P50549 477 aa12.37□□□□□ -0.43
TRIM28-205ENST00000595028 RPL31P62899 125 aaKnown RBP12.37□□□□□ -0.43
TRIM28-205ENST00000595028 DEFA6Q01524 100 aa12.37□□□□□ -0.43
TRIM28-205ENST00000595028 COL10A1Q03692 680 aa12.37□□□□□ -0.43
TRIM28-205ENST00000595028 MKXQ8IYA7 352 aa12.37□□□□□ -0.43
TRIM28-205ENST00000595028 ASCC1Q8N9N2 400 aaKnown RBP12.37□□□□□ -0.43
TRIM28-205ENST00000595028 OR5AK2Q8NH90 309 aa12.37□□□□□ -0.43
TRIM28-205ENST00000595028 TSEN15Q8WW01 171 aaKnown RBP12.37□□□□□ -0.43
TRIM28-205ENST00000595028 SSMEM1Q8WWF3 244 aa12.37□□□□□ -0.43
TRIM28-205ENST00000595028 RBFOX1Q9NWB1 397 aaKnown RBP12.37□□□□□ -0.43
TRIM28-205ENST00000595028 IL36RNQ9UBH0 155 aa12.37□□□□□ -0.43
TRIM28-205ENST00000595028 DIMT1Q9UNQ2 313 aaKnown RBP12.37□□□□□ -0.43
TRIM28-205ENST00000595028 DHDHQ9UQ10 334 aa12.37□□□□□ -0.43
TRIM28-205ENST00000595028 POMT1Q9Y6A1 747 aa12.37□□□□□ -0.43
TRIM28-205ENST00000595028 HSPE1-MOB4S4R3N1 261 aa12.37□□□□□ -0.43
TRIM28-205ENST00000595028 A0A1W2PPH5 198 aa12.36□□□□□ -0.43
TRIM28-205ENST00000595028 H0YAE9 185 aa12.36□□□□□ -0.43
TRIM28-205ENST00000595028 K7N7A8 449 aa12.36□□□□□ -0.43
TRIM28-205ENST00000595028 NPFFO15130 113 aa12.36□□□□□ -0.43
TRIM28-205ENST00000595028 CHRM2P08172 466 aa12.36□□□□□ -0.43
TRIM28-205ENST00000595028 BCL3P20749 454 aa12.36□□□□□ -0.43
TRIM28-205ENST00000595028 CAPGP40121 348 aa12.36□□□□□ -0.43
TRIM28-205ENST00000595028 NPBWR2P48146 333 aa12.36□□□□□ -0.43
TRIM28-205ENST00000595028 GTF2A1P52655 376 aaPredicted RBP12.36□□□□□ -0.43
TRIM28-205ENST00000595028 FOXL1Q12952 345 aa12.36□□□□□ -0.43
TRIM28-205ENST00000595028 ZNF273Q14593 569 aa12.36□□□□□ -0.43
TRIM28-205ENST00000595028 CDK5R1Q15078 307 aa12.36□□□□□ -0.43
TRIM28-205ENST00000595028 XAF1Q6GPH4 301 aa12.36□□□□□ -0.43
TRIM28-205ENST00000595028 C16orf87Q6PH81 154 aa12.36□□□□□ -0.43
TRIM28-205ENST00000595028 FIP1L1Q6UN15 594 aaKnown RBP12.36□□□□□ -0.43
TRIM28-205ENST00000595028 PARP16Q8N5Y8 322 aa12.36□□□□□ -0.43
TRIM28-205ENST00000595028 OR5D13Q8NGL4 314 aa12.36□□□□□ -0.43
TRIM28-205ENST00000595028 RPS4Y2Q8TD47 263 aa12.36□□□□□ -0.43
TRIM28-205ENST00000595028 RGP1Q92546 391 aaPredicted RBP12.36□□□□□ -0.43
TRIM28-205ENST00000595028 RFT1Q96AA3 541 aa12.36□□□□□ -0.43
TRIM28-205ENST00000595028 CHIAQ9BZP6 476 aa12.36□□□□□ -0.43
TRIM28-205ENST00000595028 ZCCHC4Q9H5U6 513 aa12.36□□□□□ -0.43
TRIM28-205ENST00000595028 CAB39Q9Y376 341 aaPredicted RBP12.36□□□□□ -0.43
TRIM28-205ENST00000595028 CMYA5Q8N3K9 4069 aa12.36□□□□□ -0.43
TRIM28-205ENST00000595028 VWFP04275 2813 aa12.35□□□□□ -0.43
TRIM28-205ENST00000595028 SULT1B1O43704 296 aa12.35□□□□□ -0.43
TRIM28-205ENST00000595028 HAND1O96004 215 aa12.35□□□□□ -0.43
TRIM28-205ENST00000595028 FBP1P09467 338 aa12.35□□□□□ -0.43
TRIM28-205ENST00000595028 GNAO1P09471 354 aa12.35□□□□□ -0.43
TRIM28-205ENST00000595028 MYL12AP19105 171 aa12.35□□□□□ -0.43
TRIM28-205ENST00000595028 SAA4P35542 130 aa12.35□□□□□ -0.43
TRIM28-205ENST00000595028 UBE2E1P51965 193 aa12.35□□□□□ -0.43
TRIM28-205ENST00000595028 PDZK1IP1Q13113 114 aa12.35□□□□□ -0.43
TRIM28-205ENST00000595028 CCDC58Q4VC31 144 aa12.35□□□□□ -0.43
TRIM28-205ENST00000595028 OR2G6Q5TZ20 316 aa12.35□□□□□ -0.43
TRIM28-205ENST00000595028 TMEM200BQ69YZ2 307 aa12.35□□□□□ -0.43
TRIM28-205ENST00000595028 HCP5Q6MZN7 132 aa12.35□□□□□ -0.43
TRIM28-205ENST00000595028 RPL22L1Q6P5R6 122 aaKnown RBP12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms