RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 INMTO95050 263 aa12.44□□□□□ -0.42
UPF1-202ENST00000594243 ALDOBP05062 364 aa12.44□□□□□ -0.42
UPF1-202ENST00000594243 NDUFB7P17568 137 aa12.44□□□□□ -0.42
UPF1-202ENST00000594243 PPP3R1P63098 170 aa12.44□□□□□ -0.42
UPF1-202ENST00000594243 MED22Q15528 200 aa12.44□□□□□ -0.42
UPF1-202ENST00000594243 ZNF529Q6P280 563 aa12.44□□□□□ -0.42
UPF1-202ENST00000594243 PRSS48Q7RTY5 328 aa12.44□□□□□ -0.42
UPF1-202ENST00000594243 SAXO1Q8IYX7 474 aa12.44□□□□□ -0.42
UPF1-202ENST00000594243 ZSCAN4Q8NAM6 433 aaPredicted RBP12.44□□□□□ -0.42
UPF1-202ENST00000594243 ZNRF1Q8ND25 227 aa12.44□□□□□ -0.42
UPF1-202ENST00000594243 LY6G5BQ8NDX9 201 aa12.44□□□□□ -0.42
UPF1-202ENST00000594243 TMEM185AQ8NFB2 350 aa12.44□□□□□ -0.42
UPF1-202ENST00000594243 H1FXQ92522 213 aaKnown RBP12.44□□□□□ -0.42
UPF1-202ENST00000594243 THRSPQ92748 146 aa12.44□□□□□ -0.42
UPF1-202ENST00000594243 EMG1Q92979 244 aaKnown RBP12.44□□□□□ -0.42
UPF1-202ENST00000594243 UPRTQ96BW1 309 aa12.44□□□□□ -0.42
UPF1-202ENST00000594243 SPACA5Q96QH8 159 aa12.44□□□□□ -0.42
UPF1-202ENST00000594243 DCTN5Q9BTE1 182 aa12.44□□□□□ -0.42
UPF1-202ENST00000594243 CCDC90BQ9GZT6 254 aa12.44□□□□□ -0.42
UPF1-202ENST00000594243 TAS2R4Q9NYW5 299 aa12.44□□□□□ -0.42
UPF1-202ENST00000594243 CKLFQ9UBR5 152 aa12.44□□□□□ -0.42
UPF1-202ENST00000594243 OR14J1Q9UGF5 321 aa12.44□□□□□ -0.42
UPF1-202ENST00000594243 GLS2Q9UI32 602 aa12.44□□□□□ -0.42
UPF1-202ENST00000594243 NUP50Q9UKX7 468 aa12.44□□□□□ -0.42
UPF1-202ENST00000594243 ANK3Q12955 4377 aaKnown RBP12.44□□□□□ -0.42
UPF1-202ENST00000594243 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.43□□□□□ -0.424e-9■■□□□ 11.7
UPF1-202ENST00000594243 TOX4O94842 621 aa12.43□□□□□ -0.42
UPF1-202ENST00000594243 FSHBP01225 129 aa12.43□□□□□ -0.42
UPF1-202ENST00000594243 TFF1P04155 84 aa12.43□□□□□ -0.42
UPF1-202ENST00000594243 CHRM2P08172 466 aa12.43□□□□□ -0.42
UPF1-202ENST00000594243 EPHA1P21709 976 aa12.43□□□□□ -0.42
UPF1-202ENST00000594243 EEF1B2P24534 225 aaKnown RBP12.43□□□□□ -0.42
UPF1-202ENST00000594243 FPR2P25090 351 aa12.43□□□□□ -0.42
UPF1-202ENST00000594243 CAPZA1P52907 286 aa12.43□□□□□ -0.42
UPF1-202ENST00000594243 FGF12P61328 243 aa12.43□□□□□ -0.42
UPF1-202ENST00000594243 RPS11P62280 158 aaKnown RBP eCLIP12.43□□□□□ -0.42
UPF1-202ENST00000594243 IRF3Q14653 427 aa12.43□□□□□ -0.42
UPF1-202ENST00000594243 METTL11BQ5VVY1 283 aa12.43□□□□□ -0.42
UPF1-202ENST00000594243 FAM58AQ8N1B3 248 aa12.43□□□□□ -0.42
UPF1-202ENST00000594243 MS4A15Q8N5U1 240 aa12.43□□□□□ -0.42
UPF1-202ENST00000594243 CD177Q8N6Q3 437 aa12.43□□□□□ -0.42
UPF1-202ENST00000594243 C8orf46Q8TAG6 207 aa12.43□□□□□ -0.42
UPF1-202ENST00000594243 SGCDQ92629 289 aa12.43□□□□□ -0.42
UPF1-202ENST00000594243 RFT1Q96AA3 541 aa12.43□□□□□ -0.42
UPF1-202ENST00000594243 GPER1Q99527 375 aa12.43□□□□□ -0.42
UPF1-202ENST00000594243 FAM234AQ9H0X4 552 aa12.43□□□□□ -0.42
UPF1-202ENST00000594243 OCEL1Q9H607 264 aa12.43□□□□□ -0.42
UPF1-202ENST00000594243 SEBOXQ9HB31 216 aaPredicted RBP12.43□□□□□ -0.42
UPF1-202ENST00000594243 TMEM138Q9NPI0 162 aa12.43□□□□□ -0.42
UPF1-202ENST00000594243 F8VVB4 439 aa12.42□□□□□ -0.42
UPF1-202ENST00000594243 F8VWA3 439 aa12.42□□□□□ -0.42
UPF1-202ENST00000594243 TCF21O43680 179 aa12.42□□□□□ -0.42
UPF1-202ENST00000594243 GPX5O75715 221 aa12.42□□□□□ -0.42
UPF1-202ENST00000594243 KDM4BO94953 1096 aa12.42□□□□□ -0.42
UPF1-202ENST00000594243 TMEM225BP0DP42 221 aa12.42□□□□□ -0.42
UPF1-202ENST00000594243 SELLP14151 372 aa12.42□□□□□ -0.42
UPF1-202ENST00000594243 BCL3P20749 454 aa12.42□□□□□ -0.42
UPF1-202ENST00000594243 MAPK3P27361 379 aaPredicted RBP12.42□□□□□ -0.42
UPF1-202ENST00000594243 NPBWR2P48146 333 aa12.42□□□□□ -0.42
UPF1-202ENST00000594243 ARF6P62330 175 aa12.42□□□□□ -0.42
UPF1-202ENST00000594243 GPR50Q13585 617 aa12.42□□□□□ -0.42
UPF1-202ENST00000594243 SPIN3Q5JUX0 258 aa12.42□□□□□ -0.42
UPF1-202ENST00000594243 SATL1Q86VE3 508 aa12.42□□□□□ -0.42
UPF1-202ENST00000594243 CMTM4Q8IZR5 234 aa12.42□□□□□ -0.42
UPF1-202ENST00000594243 FGFRL1Q8N441 504 aa12.42□□□□□ -0.42
UPF1-202ENST00000594243 OR5D18Q8NGL1 313 aa12.42□□□□□ -0.42
UPF1-202ENST00000594243 OR13C5Q8NGS8 318 aa12.42□□□□□ -0.42
UPF1-202ENST00000594243 WDFY2Q96P53 400 aa12.42□□□□□ -0.42
UPF1-202ENST00000594243 OR5M11Q96RB7 305 aa12.42□□□□□ -0.42
UPF1-202ENST00000594243 LSM2Q9Y333 95 aaKnown RBP12.42□□□□□ -0.42
UPF1-202ENST00000594243 KPTNQ9Y664 436 aa12.42□□□□□ -0.42
UPF1-202ENST00000594243 SONP18583 2426 aaKnown RBP12.42□□□□□ -0.42
UPF1-202ENST00000594243 TRBV23-1A0A0A0MS06 115 aa12.41□□□□□ -0.42
UPF1-202ENST00000594243 A0A0A6YYJ9 748 aa12.41□□□□□ -0.42
UPF1-202ENST00000594243 ANGPTL7O43827 346 aa12.41□□□□□ -0.42
UPF1-202ENST00000594243 TK1P04183 234 aa12.41□□□□□ -0.42
UPF1-202ENST00000594243 PRKACAP17612 351 aa12.41□□□□□ -0.42
UPF1-202ENST00000594243 IGFBP3P17936 291 aaPredicted RBP12.41□□□□□ -0.42
UPF1-202ENST00000594243 BDKRB2P30411 391 aa12.41□□□□□ -0.42
UPF1-202ENST00000594243 TGFBR2P37173 567 aa12.41□□□□□ -0.42
UPF1-202ENST00000594243 CEBPDP49716 269 aaPredicted RBP12.41□□□□□ -0.42
UPF1-202ENST00000594243 BPIFB3P59826 476 aa12.41□□□□□ -0.42
UPF1-202ENST00000594243 ZP1P60852 638 aa12.41□□□□□ -0.42
UPF1-202ENST00000594243 COL10A1Q03692 680 aa12.41□□□□□ -0.42
UPF1-202ENST00000594243 ZNF146Q15072 292 aa12.41□□□□□ -0.42
UPF1-202ENST00000594243 PDCD1Q15116 288 aa12.41□□□□□ -0.42
UPF1-202ENST00000594243 KLF17Q5JT82 389 aaPredicted RBP12.41□□□□□ -0.42
UPF1-202ENST00000594243 ASPHD2Q6ICH7 369 aa12.41□□□□□ -0.42
UPF1-202ENST00000594243 CRIP3Q6Q6R5 217 aa12.41□□□□□ -0.42
UPF1-202ENST00000594243 PXT1Q8NFP0 134 aa12.41□□□□□ -0.42
UPF1-202ENST00000594243 OR52N4Q8NGI2 321 aa12.41□□□□□ -0.42
UPF1-202ENST00000594243 OR51A2Q8NGJ7 313 aa12.41□□□□□ -0.42
UPF1-202ENST00000594243 OR5D13Q8NGL4 314 aa12.41□□□□□ -0.42
UPF1-202ENST00000594243 TBC1D15Q8TC07 691 aa12.41□□□□□ -0.42
UPF1-202ENST00000594243 ZNF418Q8TF45 676 aaPredicted RBP12.41□□□□□ -0.42
UPF1-202ENST00000594243 OR14A2Q96R54 314 aa12.41□□□□□ -0.42
UPF1-202ENST00000594243 PCGF1Q9BSM1 259 aa12.41□□□□□ -0.42
UPF1-202ENST00000594243 HMG20AQ9NP66 347 aa12.41□□□□□ -0.42
UPF1-202ENST00000594243 ISYNA1Q9NPH2 558 aa12.41□□□□□ -0.42
UPF1-202ENST00000594243 RBFOX1Q9NWB1 397 aaKnown RBP12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms