RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 MT-ND4P03905 459 aa8.59□□□□□ -1.03
LIG3-216ENST00000593099 BMI1P35226 326 aa8.59□□□□□ -1.03
LIG3-216ENST00000593099 GNG10P50151 68 aa8.59□□□□□ -1.03
LIG3-216ENST00000593099 OR10A3P58181 314 aa8.59□□□□□ -1.03
LIG3-216ENST00000593099 FAM122BQ7Z309 247 aa8.59□□□□□ -1.03
LIG3-216ENST00000593099 C9orf106Q8NAJ2 232 aa8.59□□□□□ -1.03
LIG3-216ENST00000593099 LINC01560Q8TB33 94 aa8.59□□□□□ -1.03
LIG3-216ENST00000593099 APH1BQ8WW43 257 aa8.59□□□□□ -1.03
LIG3-216ENST00000593099 FAM234AQ9H0X4 552 aa8.59□□□□□ -1.03
LIG3-216ENST00000593099 MSL2Q9HCI7 577 aa8.59□□□□□ -1.03
LIG3-216ENST00000593099 STARD10Q9Y365 291 aa8.59□□□□□ -1.03
LIG3-216ENST00000593099 LRP5LA4QPB2 252 aa8.59□□□□□ -1.03
LIG3-216ENST00000593099 DFFBO76075 338 aa8.59□□□□□ -1.03
LIG3-216ENST00000593099 IFNA5P01569 189 aa8.59□□□□□ -1.03
LIG3-216ENST00000593099 IGHA1P01876 353 aa8.59□□□□□ -1.03
LIG3-216ENST00000593099 GALP22466 123 aa8.59□□□□□ -1.03
LIG3-216ENST00000593099 P2RX3P56373 397 aa8.59□□□□□ -1.03
LIG3-216ENST00000593099 SNRPNP63162 240 aaKnown RBP8.59□□□□□ -1.03
LIG3-216ENST00000593099 FAM27E3Q08E93 113 aa8.59□□□□□ -1.03
LIG3-216ENST00000593099 CLEC2AQ6UVW9 174 aa8.59□□□□□ -1.03
LIG3-216ENST00000593099 CATSPERDQ86XM0 798 aa8.59□□□□□ -1.03
LIG3-216ENST00000593099 MDS2Q8NDY4 140 aa8.59□□□□□ -1.03
LIG3-216ENST00000593099 OR5D13Q8NGL4 314 aa8.59□□□□□ -1.03
LIG3-216ENST00000593099 C2CD4CQ8TF44 421 aa8.59□□□□□ -1.03
LIG3-216ENST00000593099 EDARADDQ8WWZ3 215 aa8.59□□□□□ -1.03
LIG3-216ENST00000593099 FBXW5Q969U6 566 aa8.59□□□□□ -1.03
LIG3-216ENST00000593099 MS4A3Q96HJ5 214 aa8.59□□□□□ -1.03
LIG3-216ENST00000593099 MAP6Q96JE9 813 aa8.59□□□□□ -1.03
LIG3-216ENST00000593099 RNF167Q9H6Y7 350 aa8.59□□□□□ -1.03
LIG3-216ENST00000593099 HRASLSQ9HDD0 168 aa8.59□□□□□ -1.03
LIG3-216ENST00000593099 MDC1Q14676 2089 aaKnown RBP8.59□□□□□ -1.03
LIG3-216ENST00000593099 IGLV1-36A0A0B4J1U3 117 aa8.59□□□□□ -1.03
LIG3-216ENST00000593099 FAM221AA4D161 298 aa8.59□□□□□ -1.03
LIG3-216ENST00000593099 TMEM235A6NFC5 223 aa8.59□□□□□ -1.03
LIG3-216ENST00000593099 ZNF207O43670 478 aaKnown RBP8.59□□□□□ -1.03
LIG3-216ENST00000593099 EPXP11678 715 aa8.59□□□□□ -1.03
LIG3-216ENST00000593099 GIFP27352 417 aa8.59□□□□□ -1.03
LIG3-216ENST00000593099 SRP14P37108 136 aaKnown RBP8.59□□□□□ -1.03
LIG3-216ENST00000593099 ECI1P42126 302 aa8.59□□□□□ -1.03
LIG3-216ENST00000593099 NHLRC1Q6VVB1 395 aa8.59□□□□□ -1.03
LIG3-216ENST00000593099 DERL3Q96Q80 235 aa8.59□□□□□ -1.03
LIG3-216ENST00000593099 PTDSS2Q9BVG9 487 aa8.59□□□□□ -1.03
LIG3-216ENST00000593099 SRCAPQ6ZRS2 3230 aa8.59□□□□□ -1.03
LIG3-216ENST00000593099 BORCS7-ASMTA0A0B4J1R7 106 aa8.59□□□□□ -1.04
LIG3-216ENST00000593099 ZNHIT1O43257 154 aa8.59□□□□□ -1.04
LIG3-216ENST00000593099 AKR7A2O43488 359 aa8.59□□□□□ -1.04
LIG3-216ENST00000593099 RAMP1O60894 148 aa8.59□□□□□ -1.04
LIG3-216ENST00000593099 COX5BP10606 129 aa8.59□□□□□ -1.04
LIG3-216ENST00000593099 DCTDP32321 178 aa8.59□□□□□ -1.04
LIG3-216ENST00000593099 GPR6P46095 362 aaPredicted RBP8.59□□□□□ -1.04
LIG3-216ENST00000593099 ZNF92Q03936 586 aa8.59□□□□□ -1.04
LIG3-216ENST00000593099 BTNL3Q6UXE8 466 aa8.59□□□□□ -1.04
LIG3-216ENST00000593099 OR2W3Q7Z3T1 314 aa8.59□□□□□ -1.04
LIG3-216ENST00000593099 OR2AK2Q8NG84 335 aa8.59□□□□□ -1.04
LIG3-216ENST00000593099 PKIBQ9C010 78 aa8.59□□□□□ -1.04
LIG3-216ENST00000593099 ZNF629Q9UEG4 869 aaPredicted RBP8.59□□□□□ -1.04
LIG3-216ENST00000593099 OR4C45A6NMZ5 311 aa8.58□□□□□ -1.04
LIG3-216ENST00000593099 PHOX2AO14813 284 aa8.58□□□□□ -1.04
LIG3-216ENST00000593099 ST8SIA5O15466 376 aa8.58□□□□□ -1.04
LIG3-216ENST00000593099 TAS2R20P59543 309 aa8.58□□□□□ -1.04
LIG3-216ENST00000593099 RAB31Q13636 194 aa8.58□□□□□ -1.04
LIG3-216ENST00000593099 HABP2Q14520 560 aaPredicted RBP8.58□□□□□ -1.04
LIG3-216ENST00000593099 C9orf152Q5JTZ5 239 aa8.58□□□□□ -1.04
LIG3-216ENST00000593099 FBXW12Q6X9E4 464 aa8.58□□□□□ -1.04
LIG3-216ENST00000593099 OR8B3Q8NGG8 313 aa8.58□□□□□ -1.04
LIG3-216ENST00000593099 OR5A2Q8NGI9 324 aa8.58□□□□□ -1.04
LIG3-216ENST00000593099 DVL3Q92997 716 aaPredicted RBP8.58□□□□□ -1.04
LIG3-216ENST00000593099 RNASE6Q93091 150 aaKnown RBP8.58□□□□□ -1.04
LIG3-216ENST00000593099 ANAPC16Q96DE5 110 aa8.58□□□□□ -1.04
LIG3-216ENST00000593099 OR8B2Q96RD0 313 aa8.58□□□□□ -1.04
LIG3-216ENST00000593099 ZNF251Q9BRH9 671 aa8.58□□□□□ -1.04
LIG3-216ENST00000593099 ONECUT1Q9UBC0 465 aa8.58□□□□□ -1.04
LIG3-216ENST00000593099 KIF25Q9UIL4 384 aa8.58□□□□□ -1.04
LIG3-216ENST00000593099 ZMIZ1Q9ULJ6 1067 aa8.58□□□□□ -1.04
LIG3-216ENST00000593099 J3QT63 122 aa8.58□□□□□ -1.04
LIG3-216ENST00000593099 OGG1O15527 345 aa8.58□□□□□ -1.04
LIG3-216ENST00000593099 SLC22A5O76082 557 aa8.58□□□□□ -1.04
LIG3-216ENST00000593099 PMP2P02689 132 aa8.58□□□□□ -1.04
LIG3-216ENST00000593099 FGF9P31371 208 aaPredicted RBP8.58□□□□□ -1.04
LIG3-216ENST00000593099 RBMS2Q15434 407 aaKnown RBP8.58□□□□□ -1.04
LIG3-216ENST00000593099 STEAP3Q658P3 488 aa8.58□□□□□ -1.04
LIG3-216ENST00000593099 DMKNQ6E0U4 476 aaPredicted RBP8.58□□□□□ -1.04
LIG3-216ENST00000593099 C1orf162Q8NEQ5 155 aaPredicted RBP8.58□□□□□ -1.04
LIG3-216ENST00000593099 DYRK2Q92630 601 aa8.58□□□□□ -1.04
LIG3-216ENST00000593099 RBPMSQ93062 196 aaKnown RBP8.58□□□□□ -1.04
LIG3-216ENST00000593099 MALSU1Q96EH3 234 aa8.58□□□□□ -1.04
LIG3-216ENST00000593099 SLC17A5Q9NRA2 495 aa8.58□□□□□ -1.04
LIG3-216ENST00000593099 SLC23A1Q9UHI7 598 aa8.58□□□□□ -1.04
LIG3-216ENST00000593099 HELZP42694 1942 aaKnown RBP8.58□□□□□ -1.04
LIG3-216ENST00000593099 hADV38S2A0JD32 116 aa8.58□□□□□ -1.04
LIG3-216ENST00000593099 ZNF98A6NK75 572 aa8.58□□□□□ -1.04
LIG3-216ENST00000593099 CEBPZOSA8MTT3 80 aa8.58□□□□□ -1.04
LIG3-216ENST00000593099 SERPINE3A8MV23 424 aa8.58□□□□□ -1.04
LIG3-216ENST00000593099 DCTN6O00399 190 aa8.58□□□□□ -1.04
LIG3-216ENST00000593099 CDIPTO14735 213 aa8.58□□□□□ -1.04
LIG3-216ENST00000593099 GPR12P47775 334 aa8.58□□□□□ -1.04
LIG3-216ENST00000593099 RAB13P51153 203 aa8.58□□□□□ -1.04
LIG3-216ENST00000593099 HNRNPA3P51991 378 aaKnown RBP8.58□□□□□ -1.04
LIG3-216ENST00000593099 SRPXP78539 464 aa8.58□□□□□ -1.04
LIG3-216ENST00000593099 GGTLC2Q14390 218 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms