RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 SORL1Q92673 2214 aa2.19□□□□□ -2.06
SS18-214ENST00000580003 ISLRO14498 428 aa2.18□□□□□ -2.06
SS18-214ENST00000580003 IGKV1D-33P01593 117 aa2.18□□□□□ -2.06
SS18-214ENST00000580003 IGKV1-33P01594 117 aa2.18□□□□□ -2.06
SS18-214ENST00000580003 KLK1P06870 262 aa2.18□□□□□ -2.06
SS18-214ENST00000580003 CRABP2P29373 138 aa2.18□□□□□ -2.06
SS18-214ENST00000580003 SSX1Q16384 188 aa2.18□□□□□ -2.06
SS18-214ENST00000580003 ZFP82Q8N141 532 aa2.18□□□□□ -2.06
SS18-214ENST00000580003 LINC00337Q8N6G1 96 aa2.18□□□□□ -2.06
SS18-214ENST00000580003 GPX8Q8TED1 209 aa2.18□□□□□ -2.06
SS18-214ENST00000580003 C2orf15Q8WU43 125 aaKnown RBP2.18□□□□□ -2.06
SS18-214ENST00000580003 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP2.18□□□□□ -2.06
SS18-214ENST00000580003 TNFRSF14Q92956 283 aa2.18□□□□□ -2.06
SS18-214ENST00000580003 GABARAPL1Q9H0R8 117 aa2.18□□□□□ -2.06
SS18-214ENST00000580003 IGHV3-43A0A0B4J1X8 118 aa2.17□□□□□ -2.06
SS18-214ENST00000580003 A0A1B0GU33 70 aa2.17□□□□□ -2.06
SS18-214ENST00000580003 CENPXA8MT69 81 aa2.17□□□□□ -2.06
SS18-214ENST00000580003 ZNF99A8MXY4 864 aaPredicted RBP2.17□□□□□ -2.06
SS18-214ENST00000580003 G3V3Q6 166 aa2.17□□□□□ -2.06
SS18-214ENST00000580003 DHRS3O75911 302 aa2.17□□□□□ -2.06
SS18-214ENST00000580003 GZMAP12544 262 aa2.17□□□□□ -2.06
SS18-214ENST00000580003 GZMHP20718 246 aa2.17□□□□□ -2.06
SS18-214ENST00000580003 DEFB103AP81534 67 aa2.17□□□□□ -2.06
SS18-214ENST00000580003 ZNF322Q6U7Q0 402 aaPredicted RBP2.17□□□□□ -2.06
SS18-214ENST00000580003 CLEC2AQ6UVW9 174 aa2.17□□□□□ -2.06
SS18-214ENST00000580003 OR2W3Q7Z3T1 314 aa2.17□□□□□ -2.06
SS18-214ENST00000580003 LYZL2Q7Z4W2 148 aa2.17□□□□□ -2.06
SS18-214ENST00000580003 Q8NAQ8 132 aa2.17□□□□□ -2.06
SS18-214ENST00000580003 ZNF738Q8NE65 137 aa2.17□□□□□ -2.06
SS18-214ENST00000580003 OR6K6Q8NGW6 343 aa2.17□□□□□ -2.06
SS18-214ENST00000580003 UBA3Q8TBC4 463 aa2.17□□□□□ -2.06
SS18-214ENST00000580003 OR2M4Q96R27 311 aa2.17□□□□□ -2.06
SS18-214ENST00000580003 METTL26Q96S19 204 aa2.17□□□□□ -2.06
SS18-214ENST00000580003 C8orf33Q9H7E9 229 aaPredicted RBP2.17□□□□□ -2.06
SS18-214ENST00000580003 MRPL16Q9NX20 251 aaKnown RBP2.17□□□□□ -2.06
SS18-214ENST00000580003 SLC7A11Q9UPY5 501 aa2.17□□□□□ -2.06
SS18-214ENST00000580003 TRIM64CA6NLI5 447 aa2.16□□□□□ -2.06
SS18-214ENST00000580003 A8MWP4 228 aa2.16□□□□□ -2.06
SS18-214ENST00000580003 SLC37A4O43826 429 aa2.16□□□□□ -2.06
SS18-214ENST00000580003 RHOCP08134 193 aa2.16□□□□□ -2.06
SS18-214ENST00000580003 FGF4P08620 206 aa2.16□□□□□ -2.06
SS18-214ENST00000580003 IMPA1P29218 277 aa2.16□□□□□ -2.06
SS18-214ENST00000580003 PSMD4P55036 377 aaKnown RBP2.16□□□□□ -2.06
SS18-214ENST00000580003 ATP6AP1LQ52LC2 224 aa2.16□□□□□ -2.06
SS18-214ENST00000580003 CLLU1OSQ5K130 101 aa2.16□□□□□ -2.06
SS18-214ENST00000580003 CCNYL1Q8N7R7 359 aa2.16□□□□□ -2.06
SS18-214ENST00000580003 BBOF1Q8ND07 529 aa2.16□□□□□ -2.06
SS18-214ENST00000580003 PROKR2Q8NFJ6 384 aa2.16□□□□□ -2.06
SS18-214ENST00000580003 NT5CQ8TCD5 201 aa2.16□□□□□ -2.06
SS18-214ENST00000580003 RAD51AP1Q96B01 352 aa2.16□□□□□ -2.06
SS18-214ENST00000580003 TSNAXQ99598 290 aaKnown RBP2.16□□□□□ -2.06
SS18-214ENST00000580003 ASB7Q9H672 318 aa2.16□□□□□ -2.06
SS18-214ENST00000580003 TFR2Q9UP52 801 aa2.16□□□□□ -2.06
SS18-214ENST00000580003 A0A1W2PRF3 423 aa2.15□□□□□ -2.07
SS18-214ENST00000580003 A0A1W2PRM7 423 aa2.15□□□□□ -2.07
SS18-214ENST00000580003 F5H5P2 479 aa2.15□□□□□ -2.07
SS18-214ENST00000580003 H7C2Y5 167 aa2.15□□□□□ -2.07
SS18-214ENST00000580003 RNF113AO15541 343 aaKnown RBP2.15□□□□□ -2.07
SS18-214ENST00000580003 OR5AL1P0C617 328 aa2.15□□□□□ -2.07
SS18-214ENST00000580003 CCL23P55773 120 aa2.15□□□□□ -2.07
SS18-214ENST00000580003 MLF1P58340 268 aa2.15□□□□□ -2.07
SS18-214ENST00000580003 LCN2P80188 198 aa2.15□□□□□ -2.07
SS18-214ENST00000580003 RAB11BQ15907 218 aa2.15□□□□□ -2.07
SS18-214ENST00000580003 TMEM241Q24JQ0 296 aa2.15□□□□□ -2.07
SS18-214ENST00000580003 ZNF773Q6PK81 442 aa2.15□□□□□ -2.07
SS18-214ENST00000580003 MRPL21Q7Z2W9 205 aaKnown RBP2.15□□□□□ -2.07
SS18-214ENST00000580003 LINC00596Q86U02 117 aa2.15□□□□□ -2.07
SS18-214ENST00000580003 OR4K13Q8NH42 304 aa2.15□□□□□ -2.07
SS18-214ENST00000580003 FAM240AA0A1B0GVK7 77 aa2.14□□□□□ -2.07
SS18-214ENST00000580003 H3BMM0 161 aa2.14□□□□□ -2.07
SS18-214ENST00000580003 FFAR1O14842 300 aa2.14□□□□□ -2.07
SS18-214ENST00000580003 TCAPO15273 167 aa2.14□□□□□ -2.07
SS18-214ENST00000580003 COX7A2P2O60397 106 aa2.14□□□□□ -2.07
SS18-214ENST00000580003 HOXB8P17481 243 aaPredicted RBP2.14□□□□□ -2.07
SS18-214ENST00000580003 CD9P21926 228 aa2.14□□□□□ -2.07
SS18-214ENST00000580003 TOMM34Q15785 309 aaPredicted RBP2.14□□□□□ -2.07
SS18-214ENST00000580003 FAM43BQ6ZT52 329 aaPredicted RBP2.14□□□□□ -2.07
SS18-214ENST00000580003 OR8K1Q8NGG5 319 aa2.14□□□□□ -2.07
SS18-214ENST00000580003 OR2K2Q8NGT1 345 aa2.14□□□□□ -2.07
SS18-214ENST00000580003 UBE2WQ96B02 151 aa2.14□□□□□ -2.07
SS18-214ENST00000580003 CERS2Q96G23 380 aa2.14□□□□□ -2.07
SS18-214ENST00000580003 YPEL4Q96NS1 127 aa2.14□□□□□ -2.07
SS18-214ENST00000580003 KRTAP4-1Q9BYQ7 146 aa2.14□□□□□ -2.07
SS18-214ENST00000580003 ZMAT5Q9UDW3 170 aaKnown RBP2.14□□□□□ -2.07
SS18-214ENST00000580003 FADS3Q9Y5Q0 445 aa2.14□□□□□ -2.07
SS18-214ENST00000580003 ZNF706Q9Y5V0 76 aaPredicted RBP2.14□□□□□ -2.07
SS18-214ENST00000580003 TRGV4A0A0C4DH28 118 aa2.13□□□□□ -2.07
SS18-214ENST00000580003 LOC389332A0A1B0GUA5 103 aa2.13□□□□□ -2.07
SS18-214ENST00000580003 HLA-AP01891 365 aaKnown RBP2.13□□□□□ -2.07
SS18-214ENST00000580003 SLC35B1P78383 322 aa2.13□□□□□ -2.07
SS18-214ENST00000580003 BCL2A1Q16548 175 aa2.13□□□□□ -2.07
SS18-214ENST00000580003 ZNF404Q494X3 552 aa2.13□□□□□ -2.07
SS18-214ENST00000580003 PCOTHQ58A44 107 aa2.13□□□□□ -2.07
SS18-214ENST00000580003 IDNKQ5T6J7 187 aa2.13□□□□□ -2.07
SS18-214ENST00000580003 FAM27D1Q5T7N8 215 aa2.13□□□□□ -2.07
SS18-214ENST00000580003 EPGNQ6UW88 154 aa2.13□□□□□ -2.07
SS18-214ENST00000580003 CYHR1Q6ZMK1 362 aa2.13□□□□□ -2.07
SS18-214ENST00000580003 PYURFQ96I23 114 aa2.13□□□□□ -2.07
SS18-214ENST00000580003 OR8B2Q96RD0 313 aa2.13□□□□□ -2.07
SS18-214ENST00000580003 C20orf144Q9BQM9 153 aa2.13□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms