RNA–Protein interactions for RNA: ENST00000579727.5

RARA-209, Transcript of retinoic acid receptor alpha, human

TSL 4

Gene RARA, Length 564 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RARA-209	ENST00000579727	CD276	Q5ZPR3	534 aa		13.52	□□□□□ -0.25
RARA-209	ENST00000579727	CRIP3	Q6Q6R5	217 aa		13.52	□□□□□ -0.25
RARA-209	ENST00000579727	OR5D14	Q8NGL3	314 aa		13.52	□□□□□ -0.25
RARA-209	ENST00000579727	EMG1	Q92979	244 aa	Known RBP	13.52	□□□□□ -0.25
RARA-209	ENST00000579727	TMEM106A	Q96A25	262 aa		13.52	□□□□□ -0.25
RARA-209	ENST00000579727	OR5M11	Q96RB7	305 aa		13.52	□□□□□ -0.25
RARA-209	ENST00000579727	PCGF1	Q9BSM1	259 aa		13.52	□□□□□ -0.25
RARA-209	ENST00000579727	MND1	Q9BWT6	205 aa		13.52	□□□□□ -0.25
RARA-209	ENST00000579727	CCDC90B	Q9GZT6	254 aa		13.52	□□□□□ -0.25
RARA-209	ENST00000579727	OCEL1	Q9H607	264 aa		13.52	□□□□□ -0.25
RARA-209	ENST00000579727	HES4	Q9HCC6	221 aa		13.52	□□□□□ -0.25
RARA-209	ENST00000579727	RBFOX1	Q9NWB1	397 aa	Known RBP	13.52	□□□□□ -0.25
RARA-209	ENST00000579727	SLC25A10	Q9UBX3	287 aa	Predicted RBP	13.52	□□□□□ -0.25
RARA-209	ENST00000579727	RAB26	Q9ULW5	256 aa		13.52	□□□□□ -0.25
RARA-209	ENST00000579727	TPRKB	Q9Y3C4	175 aa		13.52	□□□□□ -0.25
RARA-209	ENST00000579727	TRAV40	A0A0B4J280	105 aa		13.51	□□□□□ -0.25
RARA-209	ENST00000579727	IGKV1-12	A0A0C4DH73	117 aa		13.51	□□□□□ -0.25
RARA-209	ENST00000579727	IGKV1D-12	P01611	117 aa		13.51	□□□□□ -0.25
RARA-209	ENST00000579727	CD2	P06729	351 aa		13.51	□□□□□ -0.25
RARA-209	ENST00000579727	SFTPB	P07988	381 aa		13.51	□□□□□ -0.25
RARA-209	ENST00000579727	CEL	P19835	753 aa		13.51	□□□□□ -0.25
RARA-209	ENST00000579727	RAB3A	P20336	220 aa		13.51	□□□□□ -0.25
RARA-209	ENST00000579727	EPHA1	P21709	976 aa		13.51	□□□□□ -0.25
RARA-209	ENST00000579727	TAS2R43	P59537	309 aa		13.51	□□□□□ -0.25
RARA-209	ENST00000579727	RPS11	P62280	158 aa	Known RBP eCLIP	13.51	□□□□□ -0.25
RARA-209	ENST00000579727	MED22	Q15528	200 aa		13.51	□□□□□ -0.25
RARA-209	ENST00000579727	NANP	Q8TBE9	248 aa		13.51	□□□□□ -0.25
RARA-209	ENST00000579727	MED30	Q96HR3	178 aa		13.51	□□□□□ -0.25
RARA-209	ENST00000579727	OR14A2	Q96R54	314 aa		13.51	□□□□□ -0.25
RARA-209	ENST00000579727	CDCA4	Q9BXL8	241 aa		13.51	□□□□□ -0.25
RARA-209	ENST00000579727	DNTTIP1	Q9H147	329 aa		13.51	□□□□□ -0.25
RARA-209	ENST00000579727	RPUSD1	Q9UJJ7	312 aa	Known RBP	13.51	□□□□□ -0.25
RARA-209	ENST00000579727	LSM2	Q9Y333	95 aa	Known RBP	13.51	□□□□□ -0.25
RARA-209	ENST00000579727	TRBV5-5	A0A0J9YX44	114 aa		13.5	□□□□□ -0.25
RARA-209	ENST00000579727		A0A1W2PPK0	400 aa		13.5	□□□□□ -0.25
RARA-209	ENST00000579727	RGS10	O43665	173 aa		13.5	□□□□□ -0.25
RARA-209	ENST00000579727	CYB5A	P00167	134 aa		13.5	□□□□□ -0.25
RARA-209	ENST00000579727	FSHB	P01225	129 aa		13.5	□□□□□ -0.25
RARA-209	ENST00000579727	IGHV4-38-2	P0DP08	117 aa		13.5	□□□□□ -0.25
RARA-209	ENST00000579727	PRKACA	P17612	351 aa		13.5	□□□□□ -0.25
RARA-209	ENST00000579727	CRHBP	P24387	322 aa		13.5	□□□□□ -0.25
RARA-209	ENST00000579727	DUSP1	P28562	367 aa		13.5	□□□□□ -0.25
RARA-209	ENST00000579727	PRDX2	P32119	198 aa		13.5	□□□□□ -0.25
RARA-209	ENST00000579727	ARF6	P62330	175 aa		13.5	□□□□□ -0.25
RARA-209	ENST00000579727	PDZK1IP1	Q13113	114 aa		13.5	□□□□□ -0.25
RARA-209	ENST00000579727	SATL1	Q86VE3	508 aa		13.5	□□□□□ -0.25
RARA-209	ENST00000579727	MKX	Q8IYA7	352 aa		13.5	□□□□□ -0.25
RARA-209	ENST00000579727	SDSL	Q96GA7	329 aa		13.5	□□□□□ -0.25
RARA-209	ENST00000579727	ZNF184	Q99676	751 aa	Predicted RBP	13.5	□□□□□ -0.25
RARA-209	ENST00000579727	SLC6A7	Q99884	636 aa		13.5	□□□□□ -0.25
RARA-209	ENST00000579727	ONECUT1	Q9UBC0	465 aa		13.5	□□□□□ -0.25
RARA-209	ENST00000579727	ZNF879	B4DU55	563 aa		13.49	□□□□□ -0.25
RARA-209	ENST00000579727	KNG1	P01042	644 aa		13.49	□□□□□ -0.25
RARA-209	ENST00000579727	PPIAL4G	P0DN37	164 aa		13.49	□□□□□ -0.25
RARA-209	ENST00000579727	MAP2K4	P45985	399 aa		13.49	□□□□□ -0.25
RARA-209	ENST00000579727	COL10A1	Q03692	680 aa		13.49	□□□□□ -0.25
RARA-209	ENST00000579727	PRB3	Q04118	309 aa	Predicted RBP	13.49	□□□□□ -0.25
RARA-209	ENST00000579727	IRF3	Q14653	427 aa		13.49	□□□□□ -0.25
RARA-209	ENST00000579727	KISS1	Q15726	138 aa		13.49	□□□□□ -0.25
RARA-209	ENST00000579727		Q499Y3	187 aa		13.49	□□□□□ -0.25
RARA-209	ENST00000579727	YIF1B	Q5BJH7	314 aa		13.49	□□□□□ -0.25
RARA-209	ENST00000579727	RNLS	Q5VYX0	342 aa		13.49	□□□□□ -0.25
RARA-209	ENST00000579727	ASCC1	Q8N9N2	400 aa	Known RBP	13.49	□□□□□ -0.25
RARA-209	ENST00000579727	PNLDC1	Q8NA58	520 aa	Known RBP	13.49	□□□□□ -0.25
RARA-209	ENST00000579727	OR52N4	Q8NGI2	321 aa		13.49	□□□□□ -0.25
RARA-209	ENST00000579727	GPER1	Q99527	375 aa		13.49	□□□□□ -0.25
RARA-209	ENST00000579727	DCTN5	Q9BTE1	182 aa		13.49	□□□□□ -0.25
RARA-209	ENST00000579727	DUSP21	Q9H596	190 aa		13.49	□□□□□ -0.25
RARA-209	ENST00000579727	SOX21	Q9Y651	276 aa	Predicted RBP	13.49	□□□□□ -0.25
RARA-209	ENST00000579727		A0A1W2PQ09	198 aa		13.48	□□□□□ -0.25
RARA-209	ENST00000579727	MAGEA13P	A6NCF6	341 aa		13.48	□□□□□ -0.25
RARA-209	ENST00000579727	GABRP	O00591	440 aa		13.48	□□□□□ -0.25
RARA-209	ENST00000579727	MAGEB3	O15480	346 aa		13.48	□□□□□ -0.25
RARA-209	ENST00000579727	TOX4	O94842	621 aa		13.48	□□□□□ -0.25
RARA-209	ENST00000579727	ECD	O95905	644 aa	Predicted RBP	13.48	□□□□□ -0.25
RARA-209	ENST00000579727	TMEM225B	P0DP42	221 aa		13.48	□□□□□ -0.25
RARA-209	ENST00000579727	EEF1B2	P24534	225 aa	Known RBP	13.48	□□□□□ -0.25
RARA-209	ENST00000579727	DLX1	P56177	255 aa		13.48	□□□□□ -0.25
RARA-209	ENST00000579727	ZP1	P60852	638 aa		13.48	□□□□□ -0.25
RARA-209	ENST00000579727	INSL4	Q14641	139 aa		13.48	□□□□□ -0.25
RARA-209	ENST00000579727	SPHAR	Q15513	63 aa		13.48	□□□□□ -0.25
RARA-209	ENST00000579727	METTL11B	Q5VVY1	283 aa		13.48	□□□□□ -0.25
RARA-209	ENST00000579727	ZNF529	Q6P280	563 aa		13.48	□□□□□ -0.25
RARA-209	ENST00000579727	FAM185A	Q8N0U4	392 aa		13.48	□□□□□ -0.25
RARA-209	ENST00000579727	BCL6B	Q8N143	479 aa	Predicted RBP	13.48	□□□□□ -0.25
RARA-209	ENST00000579727	FAM58A	Q8N1B3	248 aa		13.48	□□□□□ -0.25
RARA-209	ENST00000579727	TEX29	Q8N6K0	151 aa		13.48	□□□□□ -0.25
RARA-209	ENST00000579727	TBX15	Q96SF7	602 aa		13.48	□□□□□ -0.25
RARA-209	ENST00000579727	TMED9	Q9BVK6	235 aa		13.48	□□□□□ -0.25
RARA-209	ENST00000579727	FAM192A	Q9GZU8	254 aa		13.48	□□□□□ -0.25
RARA-209	ENST00000579727	C19orf12	Q9NSK7	152 aa		13.48	□□□□□ -0.25
RARA-209	ENST00000579727	ZNF69	Q9UC07	566 aa		13.48	□□□□□ -0.25
RARA-209	ENST00000579727	GSTK1	Q9Y2Q3	226 aa		13.48	□□□□□ -0.25
RARA-209	ENST00000579727	TRAV8-7	A0A075B6U6	113 aa		13.47	□□□□□ -0.25
RARA-209	ENST00000579727	MEX3A	A1L020	520 aa	Known RBP	13.47	□□□□□ -0.25
RARA-209	ENST00000579727	HSMCR30	P0CW71	290 aa		13.47	□□□□□ -0.25
RARA-209	ENST00000579727	MMP9	P14780	707 aa		13.47	□□□□□ -0.25
RARA-209	ENST00000579727	OR3A4P	P47883	348 aa		13.47	□□□□□ -0.25
RARA-209	ENST00000579727	CAV3	P56539	151 aa		13.47	□□□□□ -0.25
RARA-209	ENST00000579727	PPP3R1	P63098	170 aa		13.47	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms