RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 ZBTB46Q86UZ6 589 aa12.3□□□□□ -0.44
VPS53-218ENST00000575207 UBLCP1Q8WVY7 318 aaPredicted RBP12.3□□□□□ -0.44
VPS53-218ENST00000575207 RNF183Q96D59 192 aa12.3□□□□□ -0.44
VPS53-218ENST00000575207 PRRC1Q96M27 445 aa12.3□□□□□ -0.44
VPS53-218ENST00000575207 NMNAT3Q96T66 252 aa12.3□□□□□ -0.44
VPS53-218ENST00000575207 PARD6BQ9BYG5 372 aa12.3□□□□□ -0.44
VPS53-218ENST00000575207 PLEKHA3Q9HB20 300 aa12.3□□□□□ -0.44
VPS53-218ENST00000575207 RPRD1BQ9NQG5 326 aaKnown RBP12.3□□□□□ -0.44
VPS53-218ENST00000575207 CENPMQ9NSP4 180 aa12.3□□□□□ -0.44
VPS53-218ENST00000575207 ING3Q9NXR8 418 aa12.3□□□□□ -0.44
VPS53-218ENST00000575207 SLC22A13Q9Y226 551 aa12.3□□□□□ -0.44
VPS53-218ENST00000575207 FAM172BPA6NC97 362 aa12.29□□□□□ -0.44
VPS53-218ENST00000575207 BIRC5O15392 142 aa12.29□□□□□ -0.44
VPS53-218ENST00000575207 RGS11O94810 467 aa12.29□□□□□ -0.44
VPS53-218ENST00000575207 NDUFB8O95169 186 aa12.29□□□□□ -0.44
VPS53-218ENST00000575207 RENP00797 406 aa12.29□□□□□ -0.44
VPS53-218ENST00000575207 OR5H8P0DN80 308 aa12.29□□□□□ -0.44
VPS53-218ENST00000575207 CX3CR1P49238 355 aa12.29□□□□□ -0.44
VPS53-218ENST00000575207 EDDM3AQ14507 147 aa12.29□□□□□ -0.44
VPS53-218ENST00000575207 RNF113BQ8IZP6 322 aaKnown RBP12.29□□□□□ -0.44
VPS53-218ENST00000575207 ITFG2Q969R8 447 aa12.29□□□□□ -0.44
VPS53-218ENST00000575207 SLAMF6Q96DU3 332 aa12.29□□□□□ -0.44
VPS53-218ENST00000575207 CHCHD6Q9BRQ6 235 aa12.29□□□□□ -0.44
VPS53-218ENST00000575207 RSRP1Q9BUV0 290 aa12.29□□□□□ -0.44
VPS53-218ENST00000575207 TOLLIPQ9H0E2 274 aa12.29□□□□□ -0.44
VPS53-218ENST00000575207 SIGLEC7Q9Y286 467 aa12.29□□□□□ -0.44
VPS53-218ENST00000575207 IGHV4OR15-8A0A075B7B6 117 aa12.28□□□□□ -0.44
VPS53-218ENST00000575207 A0A087WW49 117 aa12.28□□□□□ -0.44
VPS53-218ENST00000575207 TOR1AO14656 332 aa12.28□□□□□ -0.44
VPS53-218ENST00000575207 NXPH2O95156 264 aa12.28□□□□□ -0.44
VPS53-218ENST00000575207 PPIFP30405 207 aaKnown RBP12.28□□□□□ -0.44
VPS53-218ENST00000575207 RBM39Q14498 530 aaKnown RBP12.28□□□□□ -0.44
VPS53-218ENST00000575207 PRAMEF5Q5TYX0 476 aa12.28□□□□□ -0.44
VPS53-218ENST00000575207 ZNF730Q6ZMV8 503 aa12.28□□□□□ -0.44
VPS53-218ENST00000575207 DPY19L2P2Q6ZN68 376 aa12.28□□□□□ -0.44
VPS53-218ENST00000575207 FAM57BQ71RH2 274 aa12.28□□□□□ -0.44
VPS53-218ENST00000575207 OR8H2Q8N162 312 aa12.28□□□□□ -0.44
VPS53-218ENST00000575207 TOMM40LQ969M1 308 aa12.28□□□□□ -0.44
VPS53-218ENST00000575207 RPEQ96AT9 228 aa12.28□□□□□ -0.44
VPS53-218ENST00000575207 SPDL1Q96EA4 605 aa12.28□□□□□ -0.44
VPS53-218ENST00000575207 RGCCQ9H4X1 137 aa12.28□□□□□ -0.44
VPS53-218ENST00000575207 WSB1Q9Y6I7 421 aa12.28□□□□□ -0.44
VPS53-218ENST00000575207 A0A1W2PPI3 338 aa12.27□□□□□ -0.45
VPS53-218ENST00000575207 NCBP2LA6PVI3 153 aaKnown RBP12.27□□□□□ -0.45
VPS53-218ENST00000575207 ZNF878C9JN71 531 aa12.27□□□□□ -0.45
VPS53-218ENST00000575207 XRCC3O43542 346 aa12.27□□□□□ -0.45
VPS53-218ENST00000575207 NOS1APO75052 506 aaPredicted RBP12.27□□□□□ -0.45
VPS53-218ENST00000575207 ZNF45Q02386 682 aa12.27□□□□□ -0.45
VPS53-218ENST00000575207 STX3Q13277 289 aa12.27□□□□□ -0.45
VPS53-218ENST00000575207 EBI3Q14213 229 aa12.27□□□□□ -0.45
VPS53-218ENST00000575207 TRAM2Q15035 370 aa12.27□□□□□ -0.45
VPS53-218ENST00000575207 MBOAT2Q6ZWT7 520 aa12.27□□□□□ -0.45
VPS53-218ENST00000575207 PRSS45Q7RTY3 260 aa12.27□□□□□ -0.45
VPS53-218ENST00000575207 GVQW1Q8N7I0 195 aa12.27□□□□□ -0.45
VPS53-218ENST00000575207 TPRX1Q8N7U7 411 aa12.27□□□□□ -0.45
VPS53-218ENST00000575207 Q8N9W7 124 aa12.27□□□□□ -0.45
VPS53-218ENST00000575207 RGP1Q92546 391 aaPredicted RBP12.27□□□□□ -0.45
VPS53-218ENST00000575207 OR10A2Q9H208 303 aa12.27□□□□□ -0.45
VPS53-218ENST00000575207 CCDC134Q9H6E4 229 aa12.27□□□□□ -0.45
VPS53-218ENST00000575207 VIPAS39Q9H9C1 493 aa12.27□□□□□ -0.45
VPS53-218ENST00000575207 ZNF286AQ9HBT8 521 aa12.27□□□□□ -0.45
VPS53-218ENST00000575207 ZNF319Q9P2F9 582 aa12.27□□□□□ -0.45
VPS53-218ENST00000575207 RHCGQ9UBD6 479 aa12.27□□□□□ -0.45
VPS53-218ENST00000575207 MRPS28Q9Y2Q9 187 aaKnown RBP12.27□□□□□ -0.45
VPS53-218ENST00000575207 A0A087WUU8 490 aa12.26□□□□□ -0.45
VPS53-218ENST00000575207 OR5B21A6NL26 309 aa12.26□□□□□ -0.45
VPS53-218ENST00000575207 IGKV1D-33P01593 117 aa12.26□□□□□ -0.45
VPS53-218ENST00000575207 IGKV1-33P01594 117 aa12.26□□□□□ -0.45
VPS53-218ENST00000575207 IGLV1-40P01703 118 aa12.26□□□□□ -0.45
VPS53-218ENST00000575207 PSKH1P11801 424 aa12.26□□□□□ -0.45
VPS53-218ENST00000575207 SLC15A1P46059 708 aa12.26□□□□□ -0.45
VPS53-218ENST00000575207 RAB9AP51151 201 aa12.26□□□□□ -0.45
VPS53-218ENST00000575207 PRRX1P54821 245 aa12.26□□□□□ -0.45
VPS53-218ENST00000575207 TCTAP57738 103 aa12.26□□□□□ -0.45
VPS53-218ENST00000575207 MTPNP58546 118 aa12.26□□□□□ -0.45
VPS53-218ENST00000575207 GRB2P62993 217 aaKnown RBP12.26□□□□□ -0.45
VPS53-218ENST00000575207 CEACAM21Q3KPI0 293 aa12.26□□□□□ -0.45
VPS53-218ENST00000575207 CEP78Q5JTW2 689 aa12.26□□□□□ -0.45
VPS53-218ENST00000575207 TBPL2Q6SJ96 375 aa12.26□□□□□ -0.45
VPS53-218ENST00000575207 DLEU7Q6UYE1 221 aa12.26□□□□□ -0.45
VPS53-218ENST00000575207 HEPN1Q6WQI6 88 aa12.26□□□□□ -0.45
VPS53-218ENST00000575207 LYG2Q86SG7 212 aa12.26□□□□□ -0.45
VPS53-218ENST00000575207 TRAPPC6BQ86SZ2 158 aa12.26□□□□□ -0.45
VPS53-218ENST00000575207 WFDC3Q8IUB2 231 aa12.26□□□□□ -0.45
VPS53-218ENST00000575207 IFT20Q8IY31 132 aa12.26□□□□□ -0.45
VPS53-218ENST00000575207 OFCC1Q8IZS5 231 aa12.26□□□□□ -0.45
VPS53-218ENST00000575207 ERMAPQ96PL5 475 aaPredicted RBP12.26□□□□□ -0.45
VPS53-218ENST00000575207 FN3KQ9H479 309 aa12.26□□□□□ -0.45
VPS53-218ENST00000575207 HES4Q9HCC6 221 aa12.26□□□□□ -0.45
VPS53-218ENST00000575207 TFAP2AP05549 437 aa12.25□□□□□ -0.45
VPS53-218ENST00000575207 CDK2P24941 298 aa12.25□□□□□ -0.45
VPS53-218ENST00000575207 KRT74Q7RTS7 529 aa12.25□□□□□ -0.45
VPS53-218ENST00000575207 FUNDC1Q8IVP5 155 aa12.25□□□□□ -0.45
VPS53-218ENST00000575207 BATF2Q8N1L9 274 aa12.25□□□□□ -0.45
VPS53-218ENST00000575207 ZNF454Q8N9F8 522 aa12.25□□□□□ -0.45
VPS53-218ENST00000575207 OR52B2Q96RD2 323 aa12.25□□□□□ -0.45
VPS53-218ENST00000575207 MNTQ99583 582 aa12.25□□□□□ -0.45
VPS53-218ENST00000575207 HSPB9Q9BQS6 159 aa12.25□□□□□ -0.45
VPS53-218ENST00000575207 FNDC11Q9BVV2 318 aa12.25□□□□□ -0.45
VPS53-218ENST00000575207 TMEM5Q9Y2B1 443 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms